Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 7.5e-74 280.4 140 100.0
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 1.6e-60 236.1 143 82.5
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 2.1e-60 235.7 142 82.4
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 2.1e-60 235.7 142 83.1
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 3.1e-59 231.9 141 82.3
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 6.8e-59 230.7 143 81.1
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 6.8e-59 230.7 143 79.7
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 1.5e-58 229.6 141 80.9
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 2.6e-58 228.8 141 81.6
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 2.6e-58 228.8 142 78.9
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 4.4e-58 228.0 144 77.8
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 7.5e-58 227.3 144 77.8
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 7.5e-58 227.3 146 77.4
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 9.8e-58 226.9 143 79.7
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 2.2e-57 225.7 144 77.8
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 2.9e-57 225.3 140 79.3
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 4.9e-57 224.6 139 79.1
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 6.4e-57 224.2 144 78.5
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 8.3e-57 223.8 141 78.7
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 1.1e-56 223.4 144 77.8
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 1.1e-56 223.4 143 78.3
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.1e-56 223.4 144 79.9
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 1.4e-56 223.0 144 79.2
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 1.4e-56 223.0 140 80.0
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 1.4e-56 223.0 140 80.0
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 1.4e-56 223.0 140 80.0
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 1.4e-56 223.0 142 77.5
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 4.1e-56 221.5 140 76.4
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 5.4e-56 221.1 144 77.1
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 5.4e-56 221.1 141 79.4
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 9.2e-56 220.3 144 75.7
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 1.2e-55 219.9 143 76.9
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 1.2e-55 219.9 143 77.6
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 1.6e-55 219.5 145 75.2
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 2.1e-55 219.2 150 73.3
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 3.5e-55 218.4 148 74.3
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 3.5e-55 218.4 144 75.7
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 3.5e-55 218.4 148 74.3
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 3.5e-55 218.4 148 74.3
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 3.5e-55 218.4 144 75.7
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 3.5e-55 218.4 145 75.9
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.5e-55 218.4 144 76.4
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 4.6e-55 218.0 142 77.5
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 6.0e-55 217.6 144 75.0
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 7.8e-55 217.2 144 76.4
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 7.8e-55 217.2 146 77.4
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 7.8e-55 217.2 144 78.5
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 7.8e-55 217.2 144 78.5
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 1.0e-54 216.9 146 76.7
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.0e-54 216.9 140 76.4
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 1.0e-54 216.9 143 76.2
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 1.0e-54 216.9 144 74.3
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 1.7e-54 216.1 145 73.1
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 2.3e-54 215.7 144 73.6
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 3.0e-54 215.3 144 73.6
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 3.9e-54 214.9 143 75.5
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 6.6e-54 214.2 148 73.0
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 6.6e-54 214.2 143 74.8
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 8.6e-54 213.8 144 73.6
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 8.6e-54 213.8 145 74.5
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 1.1e-53 213.4 146 73.3
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.9e-53 212.6 143 76.2
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 1.9e-53 212.6 148 73.0
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 1.9e-53 212.6 145 71.7
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 1.9e-53 212.6 143 76.9
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.9e-53 212.6 144 72.2
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 2.5e-53 212.2 142 78.2
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.5e-53 212.2 141 75.9
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 2.5e-53 212.2 146 75.3
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 3.3e-53 211.8 145 73.1
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 4.3e-53 211.5 140 75.0
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 4.3e-53 211.5 131 80.2
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 4.3e-53 211.5 148 71.6
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 4.3e-53 211.5 145 73.1
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 4.3e-53 211.5 143 75.5
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 5.6e-53 211.1 147 71.4
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 5.6e-53 211.1 141 75.2
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 5.6e-53 211.1 140 76.4
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 7.3e-53 210.7 144 75.0
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 1.2e-52 209.9 145 74.5
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 1.2e-52 209.9 142 76.1
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 1.6e-52 209.5 144 73.6
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 1.6e-52 209.5 141 75.9
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.1e-52 209.1 132 78.8
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 2.1e-52 209.1 145 72.4
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 3.6e-52 208.4 146 71.9
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 6.2e-52 207.6 129 79.8
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 8.1e-52 207.2 111 88.3
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 8.1e-52 207.2 146 72.6
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 8.1e-52 207.2 141 75.2
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 8.1e-52 207.2 144 74.3
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 1.8e-51 206.1 141 75.2
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.8e-51 206.1 139 74.8
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 1.8e-51 206.1 139 74.8
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 1.8e-51 206.1 141 74.5
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 2.3e-51 205.7 140 75.0
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 3.1e-51 205.3 143 73.4
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 4.0e-51 204.9 152 69.1
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 4.0e-51 204.9 148 72.3
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 6.8e-51 204.1 143 72.7
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 6.8e-51 204.1 144 74.3
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 1.2e-50 203.4 144 74.3
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 2.0e-50 202.6 146 70.5
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 4.4e-50 201.4 111 87.4
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 4.4e-50 201.4 146 71.9
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 4.4e-50 201.4 139 74.1
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 5.8e-50 201.1 170 65.3
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 5.8e-50 201.1 112 85.7
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 1.3e-49 199.9 133 75.2
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 1.7e-49 199.5 145 73.1
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 3.8e-49 198.4 165 64.2
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 6.4e-49 197.6 112 84.8
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 1.1e-48 196.8 172 62.8
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 4.1e-48 194.9 147 68.7
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 4.1e-48 194.9 147 68.7
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 4.1e-48 194.9 143 72.7
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 7.1e-48 194.1 140 70.0
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 1.6e-47 193.0 147 68.0
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 5.1e-46 188.0 220 50.9
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 3.3e-45 185.3 124 71.8
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 4.3e-45 184.9 116 77.6
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 8.1e-44 180.6 204 52.0
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 3.2e-40 168.7 105 80.0
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 5.4e-40 167.9 107 76.6
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 4.6e-39 164.9 95 85.3
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 1.0e-38 163.7 88 89.8
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 1.7e-38 162.9 92 85.9
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 8.7e-38 160.6 90 85.6
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 6.2e-36 154.5 109 71.6
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 5.8e-34 147.9 97 75.3
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 4.9e-33 144.8 108 67.6
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 1.4e-32 143.3 139 53.2
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 7.4e-29 131.0 108 60.2
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.1e-28 129.4 145 53.8
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 2.4e-27 125.9 108 60.2
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 7.9e-23 110.9 63 87.3
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 5.1e-22 108.2 103 52.4
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 3.3e-21 105.5 60 86.7
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 8.1e-20 100.9 89 60.7
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 5.3e-19 98.2 86 54.7
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 1.1e-16 90.5 113 47.8
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 3.0e-14 82.4 91 45.1
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 3.9e-14 82.0 120 44.2
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 2.1e-12 76.3 63 63.5
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 3.7e-12 75.5 64 56.2
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 1.8e-11 73.2 59 62.7
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 4.5e-10 68.6 49 67.3
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 1.9e-08 63.2 35 82.9
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 2.7e-07 59.3 54 57.4
BolC3t13075H Brassica oleracea HOM05D004802 ORTHO05D005591 1.0e-06 57.4 29 86.2
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 1.3e-06 57.0 72 41.7
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 3.0e-06 55.8 98 42.9
A06p04960 Brassica napus HOM05D005594 ORTHO05D006403 5.1e-06 55.1 58 51.7
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 8.7e-06 54.3 43 62.8
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 8.7e-06 54.3 43 62.8
RcHm_v2.0_Chr3g0484351 Rosa chinensis HOM05D004802 ORTHO05D005591 8.7e-06 54.3 43 62.8


User provided reference genes

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