Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G051 Amborella trichopoda HOM05D004810 ORTHO05D006272 0.0e+00 2918.6 1418 100.0
Nn3g21885 Nelumbo nucifera HOM05D004810 ORTHO05D006272 0.0e+00 1427.9 1423 51.4
MBI18_g09625_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D006272 0.0e+00 1397.1 1430 51.9
TAR362G0253 Trochodendron aralioides HOM05D004810 ORTHO05D006272 0.0e+00 1385.2 1427 51.0
PSO170G6261 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1372.1 1439 51.0
PSO357G0647 Papaver somniferum HOM05D004810 ORTHO05D006272 0.0e+00 1359.7 1439 50.8
GSVIVG01028203001 Vitis vinifera HOM05D004810 ORTHO05D006272 0.0e+00 1332.8 1420 49.5
Aqoxy5G02779 Aquilegia oxysepala HOM05D004810 ORTHO05D006272 0.0e+00 1324.7 1429 49.1
Cfa004881 Carpinus fangiana HOM05D004810 ORTHO05D006272 0.0e+00 1300.8 1428 49.0
QL12p034348 Quercus lobata HOM05D004810 ORTHO05D006272 0.0e+00 1293.9 1489 46.8
TWI14G1319 Tripterygium wilfordii HOM05D004810 ORTHO05D006272 0.0e+00 1281.5 1433 47.5
Rhsim13G0000700 Rhododendron simsii HOM05D004810 ORTHO05D006272 0.0e+00 1280.8 1446 49.1
Duzib138G1217 Durio zibethinus HOM05D004810 ORTHO05D006272 0.0e+00 1280.4 1447 47.5
Thecc.01G322600 Theobroma cacao HOM05D004810 ORTHO05D006272 0.0e+00 1278.5 1428 48.5
Haze_05120 Corylus avellana HOM05D004810 ORTHO05D006272 0.0e+00 1266.9 1493 46.8
CiPaw.07G123600 Carya illinoinensis HOM05D004810 ORTHO05D006272 0.0e+00 1264.2 1446 47.7
Ciclev10018506m.g Citrus clementina HOM05D004810 ORTHO05D006272 0.0e+00 1257.7 1438 46.6
Potri.002G189400 Populus trichocarpa HOM05D004810 ORTHO05D006272 0.0e+00 1251.9 1460 47.1
Gorai.008G136000 Gossypium raimondii HOM05D004810 ORTHO05D006272 0.0e+00 1250.3 1437 46.3
Medtr7g110260 Medicago truncatula HOM05D004810 ORTHO05D006272 0.0e+00 1243.8 1434 47.4
Lj1g0015466 Lotus japonicus HOM05D004810 ORTHO05D006272 0.0e+00 1242.6 1430 46.6
Manes.05G010600 Manihot esculenta HOM05D004810 ORTHO05D006272 0.0e+00 1241.9 1392 48.6
Actinidia21354 Actinidia chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1239.6 1431 47.4
Ca_09236_v3 Cicer arietinum L. HOM05D004810 ORTHO05D006272 0.0e+00 1236.5 1459 46.2
Eucgr.K00589 Eucalyptus grandis HOM05D004810 ORTHO05D006272 0.0e+00 1234.2 1433 46.9
Lalb_Chr04g0260131 Lupinus albus HOM05D004810 ORTHO05D006272 0.0e+00 1227.2 1436 46.1
MD09G1293000 Malus domestica HOM05D004810 ORTHO05D006272 0.0e+00 1224.5 1444 46.7
TPR.G4131 Trifolium pratense HOM05D004810 ORTHO05D006272 0.0e+00 1223.0 1428 46.8
RcHm_v2.0_Chr3g0486381 Rosa chinensis HOM05D004810 ORTHO05D006272 0.0e+00 1220.7 1449 46.7
arahy.Tifrunner.gnm1.ann1.NAX4N2 Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1219.5 1441 46.7
DCAR_018250 Daucus carota HOM05D004810 ORTHO05D006272 0.0e+00 1215.7 1486 45.4
THA.LOC104825930 Tarenaya hassleriana HOM05D004810 ORTHO05D006272 0.0e+00 1214.9 1423 45.2
arahy.Tifrunner.gnm1.ann1.RS5E8T Arachis hypogaea HOM05D004810 ORTHO05D006272 0.0e+00 1214.5 1440 46.5
CDE05G2014 Ceratophyllum demersum HOM05D004810 ORTHO05D006272 0.0e+00 1211.1 1435 46.8
Glyma.19G220100 Glycine max HOM05D004810 ORTHO05D006272 0.0e+00 1210.7 1424 46.1
Sed0025982 Sechium edule HOM05D004810 ORTHO05D006272 0.0e+00 1209.9 1422 45.9
CsaV3_3G031590 Cucumis sativus L. HOM05D004810 ORTHO05D006272 0.0e+00 1207.6 1413 45.5
Sabra02G0166300 Salix brachista HOM05D004810 ORTHO05D006272 0.0e+00 1204.9 1519 44.8
Phvul.001G216500 Phaseolus vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1202.2 1423 46.2
AL6G51450 Arabidopsis lyrata HOM05D004810 ORTHO05D006272 0.0e+00 1201.8 1415 45.4
PGR142G2149 Punica granatum HOM05D004810 ORTHO05D006272 0.0e+00 1199.9 1433 45.9
AT4G01860 Arabidopsis thaliana HOM05D004810 ORTHO05D006272 0.0e+00 1198.7 1420 45.4
Prupe.3G004200 Prunus persica HOM05D004810 ORTHO05D006272 0.0e+00 1197.2 1431 46.6
Sp6g01700 Schrenkiella parvula HOM05D004810 ORTHO05D006272 0.0e+00 1197.2 1424 44.4
FAN19G2038 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1196.0 1431 46.1
FvH4_1g26470 Fragaria vesca HOM05D004810 ORTHO05D006272 0.0e+00 1192.9 1431 46.0
BcaB01g02106 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1192.6 1425 44.4
Carub.0006s3538 Capsella rubella HOM05D004810 ORTHO05D006272 0.0e+00 1191.0 1428 45.0
COL.COLO4_23155 Corchorus olitorius HOM05D004810 ORTHO05D006272 0.0e+00 1189.5 1443 45.6
Sopen01g030000 Solanum pennellii HOM05D004810 ORTHO05D006272 0.0e+00 1186.8 1426 46.4
FAN23G0904 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1185.6 1436 45.3
AUR62011731 Chenopodium quinoa HOM05D004810 ORTHO05D006272 0.0e+00 1182.9 1408 45.0
MSTRG.21726 Avicennia marina HOM05D004810 ORTHO05D006272 0.0e+00 1182.2 1453 45.6
FAN26G0889 Fragaria x ananassa HOM05D004810 ORTHO05D006272 0.0e+00 1172.9 1433 44.9
Aa31LG5G1530 Aethionema arabicum HOM05D004810 ORTHO05D006272 0.0e+00 1172.1 1433 44.9
Thhalv10027621m.g Eutrema salsugineum HOM05D004810 ORTHO05D006272 0.0e+00 1171.8 1425 44.4
EL10As5g23578 Beta vulgaris HOM05D004810 ORTHO05D006272 0.0e+00 1168.7 1450 44.3
C09p01390 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1167.1 1415 44.5
Cc01_g21880 Coffea canephora HOM05D004810 ORTHO05D006272 0.0e+00 1159.1 1506 43.8
A09p01330 Brassica napus HOM05D004810 ORTHO05D006272 0.0e+00 1155.2 1420 43.7
BraA09t35800Z Brassica rapa HOM05D004810 ORTHO05D006272 0.0e+00 1155.2 1419 43.6
HPP92_017301 Vanilla planifolia HOM05D004810 ORTHO05D006272 0.0e+00 1154.0 1440 45.8
BcaC04g24069 Brassica carinata HOM05D004810 ORTHO05D006272 0.0e+00 1152.9 1418 43.5
Os03g0111800 Oryza sativa ssp. japonica HOM05D004810 ORTHO05D006272 0.0e+00 1149.8 1421 45.5
MELO3C012913.2 Cucumis melo HOM05D004810 ORTHO05D006272 0.0e+00 1148.3 1411 43.9
BolC9t53072H Brassica oleracea HOM05D004810 ORTHO05D006272 0.0e+00 1144.4 1416 44.1
SGA_v2.0_scaffold80G25689 Striga asiatica HOM05D004810 ORTHO05D006272 0.0e+00 1140.6 1430 45.2
VMungo1383G1823 Vigna mungo HOM05D004810 ORTHO05D006272 0.0e+00 1140.6 1378 45.9
HanXRQChr06g0167991 Helianthus annuus HOM05D004810 ORTHO05D006272 0.0e+00 1133.6 1405 44.7
Psat3g018400 Pisum sativum HOM05D004810 ORTHO05D006272 0.0e+00 1118.6 1423 43.9
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 0.0e+00 1112.8 1390 44.9
Atru.chr5.899 Acer truncatum HOM05D004810 ORTHO05D006272 0.0e+00 1112.1 1185 50.6
ClCG10G011790 Citrullus lanatus HOM05D004810 ORTHO05D006272 0.0e+00 1105.9 1377 44.0
Hma1.2p1_0484F.1_g162890 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 0.0e+00 1105.5 1166 51.0
Nitab4.5_0000222g0280 Nicotiana tabacum HOM05D004810 ORTHO05D006272 0.0e+00 1096.3 1434 44.3
Lsat_1_v5_gn_8_167321 Lactuca sativa HOM05D004810 ORTHO05D006272 0.0e+00 1094.0 1428 44.4
Lj2C1214G2 Lonicera japonica HOM05D004810 ORTHO05D006272 0.0e+00 1078.9 1418 43.6
Hund09692 Selenicereus undatus HOM05D004810 ORTHO05D006272 4.3e-310 1068.5 1395 43.4
Gohir.A12G121200 Gossypium hirsutum HOM05D004810 ORTHO05D006272 5.1e-303 1045.0 1198 47.2
FAN28G1956 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.4e-300 1036.2 1507 41.1
Sc18g0007580 Simmondsia chinensis HOM05D004810 ORTHO05D006272 8.5e-282 974.5 1112 46.9
CSS0014565 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 2.4e-276 956.4 1088 48.7
CSS0019531 Camellia sinensis var. sinensis HOM05D004810 ORTHO05D006272 1.5e-275 953.7 1087 48.3
Hma1.2p1_0484F.1_g162880 Hydrangea macrophylla HOM05D004810 ORTHO05D006272 1.5e-275 953.7 991 50.6
CARHR249820 Cardamine hirsuta HOM05D004810 ORTHO05D006272 1.9e-273 946.8 1081 45.4
Dinv12098 Davidia involucrata HOM05D004810 ORTHO05D006272 6.1e-264 915.2 992 49.5
Pp3c3_23690 Physcomitrium patens HOM05D004810 ORTHO05D006272 1.1e-244 851.3 1499 36.8
Mapoly0020s0127 Marchantia polymorpha HOM05D004810 ORTHO05D006272 4.2e-241 839.3 1505 35.0
Gohir.D12G125000 Gossypium hirsutum HOM05D004810 ORTHO05D006272 1.7e-229 800.8 969 44.8
AagrBONN_evm.TU.Sc2ySwM_344.1995 Anthoceros agrestis HOM05D004810 ORTHO05D006272 1.1e-228 798.1 1496 35.1
Nitab4.5_0002994g0090 Nicotiana tabacum HOM05D004810 ORTHO05D006272 2.1e-216 757.3 1444 35.3
vmacro02367 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 3.9e-202 709.9 889 47.1
Migut.D00026 Erythranthe guttata HOM05D004810 ORTHO05D006272 1.7e-194 684.5 764 48.4
SEGI_19859 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 5.3e-191 672.9 787 46.8
AUR62024565 Chenopodium quinoa HOM05D004810 ORTHO05D006272 9.0e-175 619.0 861 41.5
Cpa.g.sc67.77 Carica papaya HOM05D004810 ORTHO05D006272 1.2e-174 618.6 633 49.3
Zm00001eb404090 Zea mays HOM05D004810 ORTHO05D006272 9.3e-172 609.0 826 41.8
unitig_62.g23902 Utricularia gibba HOM05D004810 ORTHO05D006272 3.5e-171 607.1 1236 34.3
Oeu044753.1 Olea europaea HOM05D004810 ORTHO05D006272 7.6e-166 589.3 778 44.6
Oeu044752.1 Olea europaea HOM05D004810 ORTHO05D006272 3.2e-164 583.9 624 48.1
SEGI_21204 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.4e-162 578.6 891 40.6
CANSAT21G0194 Cannabis sativa HOM05D004810 ORTHO05D006272 5.3e-159 566.6 628 48.2
SMO137G0268 Selaginella moellendorffii HOM05D004810 ORTHO05D006272 1.9e-156 558.1 1399 31.0
vmacro02368 Vaccinium macrocarpon HOM05D004810 ORTHO05D006272 6.7e-154 549.7 607 49.1
Migut.D00025 Erythranthe guttata HOM05D004810 ORTHO05D006272 8.3e-128 463.0 662 41.7
FAN10G1333 Fragaria x ananassa HOM05D004810 ORTHO05D006272 2.2e-104 385.2 631 39.5
Dinv12097 Davidia involucrata HOM05D004810 ORTHO05D006272 9.5e-92 343.2 388 49.2
SEGI_09896 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 1.6e-86 325.9 340 48.2
SHI15445 Sapria himalayana HOM05D004810 ORTHO05D006272 6.9e-82 310.5 429 43.8
SEGI_37781 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 3.4e-73 281.6 300 49.0
SHI15448 Sapria himalayana HOM05D000105 ORTHO05D000023 4.5e-73 281.2 372 44.4
MCO01G012 Micromonas commoda HOM05D004810 ORTHO05D006272 1.9e-71 275.8 1655 23.9
MD17G1281400 Malus domestica HOM05D004810 ORTHO05D006272 6.0e-70 270.8 331 46.5
MD17G1281300 Malus domestica HOM05D004810 ORTHO05D006272 4.0e-58 231.5 348 40.2
PRCOL_00001957 Prasinoderma coloniale HOM05D004810 ORTHO05D006272 6.1e-54 217.6 853 24.7
CBR_g26439 Chara braunii HOM05D000019 ORTHO05D000002 8.2e-51 207.2 703 26.5
SHI15450 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-48 199.5 266 40.6
MD17G1281700 Malus domestica HOM05D004810 ORTHO05D006272 2.9e-48 198.7 260 44.6
Psat4g129960 Pisum sativum HOM05D004810 ORTHO05D006272 3.8e-48 198.4 206 50.0
Cpa.g.sc3588.1 Carica papaya HOM05D004810 ORTHO05D006272 5.0e-48 198.0 256 46.9
RcHm_v2.0_Chr3g0486501 Rosa chinensis HOM05D004810 ORTHO05D006272 4.8e-43 181.4 239 48.1
SEGI_39451 Sequoiadendron giganteum HOM05D004810 ORTHO05D006272 7.7e-41 174.1 160 51.2
A02p42710 Brassica napus HOM05D004810 ORTHO05D006272 2.2e-40 172.6 212 40.6
RcHm_v2.0_Chr3g0486491 Rosa chinensis HOM05D004810 ORTHO05D006272 2.1e-38 166.0 185 48.6
Atru.chr5.900 Acer truncatum HOM05D004810 ORTHO05D006272 3.9e-37 161.8 201 43.3
Solyc01g068070.4 Solanum lycopersicum HOM05D004810 ORTHO05D006272 8.2e-35 154.1 207 44.0
Gohir.A12G121250 Gossypium hirsutum HOM05D004810 ORTHO05D006272 1.2e-33 150.2 185 43.2
MD17G1281800 Malus domestica HOM05D004810 ORTHO05D006272 1.4e-26 126.7 89 61.8
Psat0s2464g0040 Pisum sativum HOM05D004810 ORTHO05D006272 1.0e-24 120.6 109 51.4
CAN.G100.30 Capsicum annuum HOM05D004810 ORTHO05D006272 5.0e-24 118.2 72 69.4
RcHm_v2.0_Chr3g0486511 Rosa chinensis HOM05D004810 ORTHO05D006272 8.5e-24 117.5 174 37.4
FAN24G0870 Fragaria x ananassa HOM05D004810 ORTHO05D006272 1.6e-22 113.2 151 41.1
Psat0s3766g0080 Pisum sativum HOM05D002292 ORTHO05D006272 1.4e-21 110.2 74 63.5
SHI15443 Sapria himalayana HOM05D004810 ORTHO05D006272 3.4e-20 105.5 267 30.3
Actinidia06394 Actinidia chinensis HOM05D004810 ORTHO05D006272 9.7e-20 104.0 142 41.5
RcHm_v2.0_Chr3g0486521 Rosa chinensis HOM05D004810 ORTHO05D006272 1.8e-18 99.8 97 48.5
FvH4_2g08080 Fragaria vesca HOM05D004810 ORTHO05D006272 1.6e-17 96.7 122 42.6
Lsat_1_v5_gn_2_51680 Lactuca sativa HOM05D004810 ORTHO05D006272 8.5e-16 90.9 111 44.1
Zm00001eb241980 Zea mays HOM05D004810 ORTHO05D006272 3.2e-15 89.0 93 48.4
MBI14_g40313_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.8e-11 75.1 56 67.9
MBI15_g23571_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 4.8e-11 75.1 56 67.9
C02p62710 Brassica napus HOM05D004810 ORTHO05D006272 7.0e-10 71.2 88 38.6
MBI13_g10212_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 7.0e-10 71.2 56 66.1
MBI14_g17170_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.0e-09 69.7 49 71.4
MBI19_g30553_MAGBIO Magnolia biondii HOM05D004810 ORTHO05D020845 2.7e-09 69.3 50 72.0
FAN14G3945 Fragaria x ananassa HOM05D004810 ORTHO05D029461 6.6e-08 64.7 53 54.7
CBR_g26440 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-08 64.3 51 52.9
FvH4_6g46150 Fragaria vesca HOM05D004810 ORTHO05D029461 9.5e-07 60.8 53 52.8
Cre04.g217991 Chlamydomonas reinhardtii HOM05D004810 ORTHO05D006272 1.2e-06 60.5 180 26.1
Duzib147G0143 Durio zibethinus HOM05D001610 ORTHO05D001585 1.6e-06 60.1 180 27.2
FvH4_3g18411 Fragaria vesca HOM05D004810 ORTHO05D029461 1.6e-06 60.1 42 59.5
Carub.0005s1541 Capsella rubella HOM05D002332 ORTHO05D002509 2.8e-06 59.3 139 29.5
Duzib132G0499 Durio zibethinus HOM05D001610 ORTHO05D001585 4.7e-06 58.5 181 28.2


User provided reference genes

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