Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 1.2e-56 223.0 119 100.0
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 2.4e-28 129.0 116 57.8
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 2.0e-27 125.9 113 59.3
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 3.4e-27 125.2 118 58.5
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 3.4e-27 125.2 118 58.5
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 7.6e-27 124.0 118 57.6
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 1.7e-26 122.9 120 55.8
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 2.2e-26 122.5 116 58.6
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 2.9e-26 122.1 118 54.2
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 3.8e-26 121.7 116 56.0
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 1.4e-25 119.8 116 57.8
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 4.2e-25 118.2 111 59.5
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 7.2e-25 117.5 116 53.4
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 9.3e-25 117.1 116 54.3
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 9.3e-25 117.1 113 55.8
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 9.3e-25 117.1 120 54.2
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 1.2e-24 116.7 113 54.9
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 1.6e-24 116.3 113 53.1
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 2.1e-24 115.9 110 51.8
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 2.1e-24 115.9 114 56.1
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 2.7e-24 115.5 120 51.7
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 3.5e-24 115.2 113 54.0
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 3.5e-24 115.2 117 54.7
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 3.5e-24 115.2 113 53.1
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 4.6e-24 114.8 119 54.6
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 4.6e-24 114.8 111 55.0
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 4.6e-24 114.8 122 55.7
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 6.1e-24 114.4 113 55.8
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 6.1e-24 114.4 112 51.8
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 7.9e-24 114.0 112 56.2
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.0e-23 113.6 119 52.9
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.0e-23 113.6 119 52.9
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 1.0e-23 113.6 119 52.9
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 1.3e-23 113.2 113 54.0
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 2.3e-23 112.5 111 54.1
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 3.0e-23 112.1 109 56.9
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 3.9e-23 111.7 117 53.8
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 5.1e-23 111.3 118 53.4
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 5.1e-23 111.3 120 54.2
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 5.1e-23 111.3 117 52.1
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 5.1e-23 111.3 116 52.6
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 6.7e-23 110.9 113 55.8
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 1.5e-22 109.8 114 52.6
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 1.5e-22 109.8 118 52.5
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 1.5e-22 109.8 113 54.0
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 2.5e-22 109.0 123 49.6
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 3.3e-22 108.6 120 50.0
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 4.3e-22 108.2 108 56.5
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 5.7e-22 107.8 111 55.9
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 5.7e-22 107.8 111 54.1
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 5.7e-22 107.8 114 53.5
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 5.7e-22 107.8 109 55.0
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 7.4e-22 107.5 113 52.2
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 7.4e-22 107.5 113 53.1
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 9.7e-22 107.1 119 52.1
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 9.7e-22 107.1 121 52.9
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 9.7e-22 107.1 121 52.9
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 9.7e-22 107.1 121 52.9
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 9.7e-22 107.1 115 53.9
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 1.3e-21 106.7 111 55.0
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 1.3e-21 106.7 111 55.0
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 1.3e-21 106.7 111 55.0
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 1.3e-21 106.7 111 55.0
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.3e-21 106.7 113 54.0
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 1.6e-21 106.3 120 48.3
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.6e-21 106.3 120 48.3
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.6e-21 106.3 120 48.3
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.6e-21 106.3 120 48.3
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 1.6e-21 106.3 120 48.3
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 3.7e-21 105.1 111 55.0
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 3.7e-21 105.1 113 51.3
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 4.8e-21 104.8 95 63.2
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 6.3e-21 104.4 118 44.1
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 8.2e-21 104.0 116 50.0
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 8.2e-21 104.0 116 50.0
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 1.4e-20 103.2 112 50.9
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 1.4e-20 103.2 95 60.0
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 1.8e-20 102.8 115 51.3
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 2.4e-20 102.4 97 54.6
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 3.1e-20 102.1 112 53.6
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 3.1e-20 102.1 112 53.6
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 3.1e-20 102.1 115 51.3
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 3.1e-20 102.1 118 51.7
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 4.1e-20 101.7 120 50.8
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 9.0e-20 100.5 111 50.5
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 1.2e-19 100.1 97 53.6
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 1.2e-19 100.1 113 48.7
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 1.2e-19 100.1 115 49.6
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 3.4e-19 98.6 96 54.2
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 3.4e-19 98.6 97 53.6
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 5.9e-19 97.8 111 50.5
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 5.9e-19 97.8 122 46.7
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 5.9e-19 97.8 96 57.3
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 5.9e-19 97.8 114 50.0
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 1.0e-18 97.1 122 46.7
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 1.3e-18 96.7 99 53.5
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 2.9e-18 95.5 98 54.1
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 3.8e-18 95.1 99 55.6
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 3.8e-18 95.1 96 53.1
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 6.5e-18 94.4 120 50.8
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 8.5e-18 94.0 99 54.5
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 1.4e-17 93.2 122 48.4
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 3.2e-17 92.0 97 54.6
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 4.2e-17 91.7 107 51.4
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 1.6e-16 89.7 91 56.0
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 1.8e-15 86.3 111 46.8
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 5.1e-15 84.7 83 55.4
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 2.5e-14 82.4 93 53.8
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 9.7e-14 80.5 126 46.0
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 1.4e-12 76.6 120 45.8
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 1.4e-12 76.6 119 39.5
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 3.1e-12 75.5 88 51.1
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.0e-11 72.8 87 47.1
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.0e-11 72.8 87 47.1
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.1e-09 67.0 101 40.6
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 4.2e-09 65.1 117 39.3
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 7.2e-09 64.3 110 39.1
CSS0011912 Camellia sinensis var. sinensis HOM05D003064 ORTHO05D001733 1.2e-08 63.5 79 44.3
Cfa009621 Carpinus fangiana HOM05D003064 ORTHO05D001733 1.4e-07 60.1 78 47.4
Haze_22990 Corylus avellana HOM05D003064 ORTHO05D001733 3.0e-07 58.9 76 47.4
MD03G1010900 Malus domestica HOM05D003064 ORTHO05D001733 3.3e-06 55.5 78 42.3
MD11G1012700 Malus domestica HOM05D003064 ORTHO05D001733 3.3e-06 55.5 78 42.3
Prupe.6G010800 Prunus persica HOM05D003064 ORTHO05D001733 4.4e-06 55.1 97 38.1
FvH4_3g44720 Fragaria vesca HOM05D003064 ORTHO05D001733 5.7e-06 54.7 78 41.0
FAN21G0865 Fragaria x ananassa HOM05D000001 ORTHO05D010412 5.7e-06 54.7 78 41.0
FAN25G0198 Fragaria x ananassa HOM05D000001 ORTHO05D010412 5.7e-06 54.7 78 42.3
Ciclev10017225m.g Citrus clementina HOM05D003064 ORTHO05D001733 7.4e-06 54.3 78 41.0
RcHm_v2.0_Chr5g0081381 Rosa chinensis HOM05D003064 ORTHO05D001733 7.4e-06 54.3 78 39.7
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 9.7e-06 53.9 78 42.3


User provided reference genes

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