Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0794G121 Amborella trichopoda HOM05D003442 ORTHO05D004005 3.0e-87 325.1 158 100.0
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 2.1e-72 275.8 143 95.1
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 5.3e-68 261.2 143 88.1
MSTRG.344 Avicennia marina HOM05D003442 ORTHO05D004005 1.2e-67 260.0 143 88.1
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 1.0e-66 256.9 143 85.3
Actinidia07921 Actinidia chinensis HOM05D003442 ORTHO05D004005 3.8e-66 255.0 143 86.0
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 3.8e-66 255.0 143 86.0
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 3.8e-66 255.0 143 86.7
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 3.8e-66 255.0 143 85.3
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 3.8e-66 255.0 143 86.7
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 5.0e-66 254.6 143 86.0
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 6.5e-66 254.2 143 86.0
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 8.5e-66 253.8 143 86.0
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 8.5e-66 253.8 143 84.6
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 8.5e-66 253.8 143 86.0
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 1.4e-65 253.1 143 85.3
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 1.4e-65 253.1 143 84.6
Cc09_g04230 Coffea canephora HOM05D003442 ORTHO05D004005 1.9e-65 252.7 143 85.3
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 1.9e-65 252.7 143 83.9
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 1.9e-65 252.7 143 86.7
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 3.2e-65 251.9 143 83.9
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 3.2e-65 251.9 143 86.0
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 3.2e-65 251.9 143 85.3
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 3.2e-65 251.9 143 85.3
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 3.2e-65 251.9 143 84.6
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 4.2e-65 251.5 143 85.3
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 5.5e-65 251.1 143 86.0
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 5.5e-65 251.1 143 84.6
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 7.2e-65 250.8 143 83.9
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 9.4e-65 250.4 143 83.9
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 9.4e-65 250.4 143 83.9
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 9.4e-65 250.4 143 83.2
Phvul.003G250932 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 9.4e-65 250.4 143 84.6
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 9.4e-65 250.4 143 83.9
VMungo0251G1146 Vigna mungo HOM05D003442 ORTHO05D004005 9.4e-65 250.4 143 84.6
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.2e-64 250.0 143 83.9
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 1.6e-64 249.6 143 83.9
Ciclev10032936m.g Citrus clementina HOM05D003442 ORTHO05D004005 2.1e-64 249.2 143 84.6
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 2.7e-64 248.8 143 83.2
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 3.6e-64 248.4 143 84.6
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 4.7e-64 248.1 143 82.5
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 4.7e-64 248.1 143 82.5
arahy.Tifrunner.gnm1.ann1.I4HYIQ Arachis hypogaea HOM05D003442 ORTHO05D004005 6.1e-64 247.7 143 83.2
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 6.1e-64 247.7 143 84.6
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 6.1e-64 247.7 143 83.2
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 7.9e-64 247.3 143 84.6
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 7.9e-64 247.3 143 84.6
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 7.9e-64 247.3 143 84.6
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 7.9e-64 247.3 143 84.6
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 7.9e-64 247.3 143 84.6
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 7.9e-64 247.3 143 83.2
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 1.0e-63 246.9 143 83.2
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 1.0e-63 246.9 143 83.2
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 1.4e-63 246.5 143 82.5
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 1.4e-63 246.5 143 82.5
TAR365G0691 Trochodendron aralioides HOM05D003442 ORTHO05D004005 1.4e-63 246.5 143 85.3
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 1.8e-63 246.1 143 83.2
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 1.8e-63 246.1 143 83.9
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 2.3e-63 245.7 143 82.5
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 2.3e-63 245.7 143 83.9
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 2.3e-63 245.7 143 83.9
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 2.3e-63 245.7 143 83.9
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 2.3e-63 245.7 143 83.9
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 2.3e-63 245.7 143 83.9
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 2.3e-63 245.7 143 83.2
SalBow1G1076 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.3e-63 245.7 143 81.8
SalBow1G3564 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.3e-63 245.7 143 81.8
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 2.3e-63 245.7 143 81.1
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 3.0e-63 245.4 143 82.5
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 3.0e-63 245.4 143 83.2
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 3.0e-63 245.4 143 83.9
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 3.0e-63 245.4 143 82.5
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 3.0e-63 245.4 143 83.2
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 3.9e-63 245.0 143 83.9
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 3.9e-63 245.0 143 81.8
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 3.9e-63 245.0 143 83.2
Oeu001224.1 Olea europaea HOM05D003442 ORTHO05D004005 5.1e-63 244.6 143 82.5
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 6.7e-63 244.2 143 82.5
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 6.7e-63 244.2 141 83.7
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 6.7e-63 244.2 143 81.8
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 6.7e-63 244.2 143 81.1
CDE02G0117 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 8.8e-63 243.8 141 83.7
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 8.8e-63 243.8 143 83.9
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 8.8e-63 243.8 143 82.5
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 8.8e-63 243.8 143 82.5
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 1.1e-62 243.4 141 83.7
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.5e-62 243.0 143 81.1
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 1.5e-62 243.0 143 81.1
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 1.5e-62 243.0 143 82.5
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 2.0e-62 242.7 143 82.5
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 2.0e-62 242.7 143 81.1
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 2.0e-62 242.7 143 82.5
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 2.0e-62 242.7 143 81.8
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.6e-62 242.3 143 79.7
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.6e-62 242.3 143 79.7
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 2.6e-62 242.3 143 82.5
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 3.3e-62 241.9 143 79.0
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 4.4e-62 241.5 143 82.5
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 4.4e-62 241.5 143 81.1
AL7G17190 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 5.7e-62 241.1 143 82.5
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 5.7e-62 241.1 143 80.4
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 5.7e-62 241.1 143 81.8
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 5.7e-62 241.1 141 80.9
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 5.7e-62 241.1 143 82.5
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 5.7e-62 241.1 143 82.5
Psat4g090760 Pisum sativum HOM05D003442 ORTHO05D004005 5.7e-62 241.1 143 81.8
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 7.4e-62 240.7 143 82.5
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 1.3e-61 240.0 143 81.1
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 1.3e-61 240.0 143 81.1
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 1.3e-61 240.0 143 82.5
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 1.7e-61 239.6 143 81.8
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 1.7e-61 239.6 143 79.7
CARHR242660 Cardamine hirsuta HOM05D003442 ORTHO05D004005 2.2e-61 239.2 143 81.8
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.2e-61 239.2 143 78.3
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 2.8e-61 238.8 143 81.1
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 2.8e-61 238.8 143 79.7
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 2.8e-61 238.8 143 82.5
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.7e-61 238.4 139 81.3
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 4.8e-61 238.0 143 79.0
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 4.8e-61 238.0 143 81.1
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 4.8e-61 238.0 143 80.4
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 6.3e-61 237.7 143 81.1
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 8.2e-61 237.3 143 79.0
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 1.8e-60 236.1 143 79.7
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 3.1e-60 235.3 143 78.3
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 5.3e-60 234.6 143 78.3
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 5.3e-60 234.6 143 79.7
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 5.3e-60 234.6 143 78.3
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 7.0e-60 234.2 143 80.4
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 7.0e-60 234.2 143 80.4
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 9.1e-60 233.8 143 79.7
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 9.1e-60 233.8 143 79.7
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 2.6e-59 232.3 132 84.8
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 5.9e-59 231.1 132 84.1
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 7.7e-59 230.7 143 76.9
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 7.7e-59 230.7 143 76.2
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 1.0e-58 230.3 143 80.4
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 2.9e-58 228.8 135 80.7
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 6.5e-58 227.6 143 79.0
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 1.6e-56 223.0 143 74.8
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 8.0e-56 220.7 118 86.4
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 3.5e-51 205.3 141 66.0
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 6.5e-50 201.1 141 66.0
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 5.5e-49 198.0 117 82.1
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 5.5e-49 198.0 141 63.8
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 3.6e-48 195.3 141 62.4
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 8.0e-48 194.1 116 80.2
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 4.0e-47 191.8 118 72.0
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 3.4e-46 188.7 143 68.5
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 2.2e-45 186.0 141 60.3
CDE04G3472 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 1.1e-44 183.7 104 84.6
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 4.1e-44 181.8 143 66.4
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 7.0e-44 181.0 139 64.7
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 1.0e-42 177.2 139 64.0
CANSAT35G0263 Cannabis sativa HOM05D003442 ORTHO05D004005 1.3e-42 176.8 139 63.3
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 1.8e-39 166.4 89 86.5
SHI02587 Sapria himalayana HOM05D003442 ORTHO05D004005 9.8e-38 160.6 140 57.9
vmacro00759 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 4.9e-37 158.3 92 79.3
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 2.7e-35 152.5 143 49.7
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 1.9e-33 146.4 145 47.6
Ciclev10033985m.g Citrus clementina HOM05D003442 ORTHO05D004005 3.6e-32 142.1 84 85.7
Sed0024694 Sechium edule HOM05D003442 ORTHO05D004005 1.8e-31 139.8 138 58.7
PGSC0003DMG402011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 8.3e-29 131.0 84 79.8
Lsat_1_v5_gn_2_1040 Lactuca sativa HOM05D003442 ORTHO05D004005 2.4e-28 129.4 119 60.5
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 5.4e-28 128.3 132 44.7
MD01G1238200 Malus domestica HOM05D003442 ORTHO05D004005 6.6e-26 121.3 83 72.3
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 3.3e-25 119.0 145 42.8
Pp3c2_19490 Physcomitrium patens HOM05D003442 ORTHO05D004005 2.8e-16 89.4 82 47.6
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 4.4e-14 82.0 61 59.0
Cfa024478 Carpinus fangiana HOM05D003442 ORTHO05D122614 1.1e-12 77.4 115 39.1
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 6.6e-10 68.2 39 82.1


User provided reference genes

Program Settings