Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0794G102 Amborella trichopoda HOM05D004553 ORTHO05D005426 3.6e-164 581.6 321 100.0
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 2.4e-123 446.0 313 77.6
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 3.3e-117 425.6 312 72.4
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 2.5e-112 409.5 307 74.3
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 4.2e-112 408.7 300 73.3
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 5.5e-112 408.3 300 73.3
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 2.1e-111 406.4 305 71.8
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 2.7e-111 406.0 304 71.1
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 4.6e-111 405.2 300 73.0
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 1.3e-110 403.7 315 69.8
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 1.1e-109 400.6 310 70.6
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 1.1e-109 400.6 313 70.0
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 3.3e-109 399.1 312 70.5
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 3.3e-109 399.1 299 69.9
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 4.3e-109 398.7 310 69.4
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 9.7e-109 397.5 310 70.0
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 1.3e-108 397.1 309 69.3
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 1.3e-108 397.1 304 72.7
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 2.2e-108 396.4 312 68.3
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 4.8e-108 395.2 300 74.0
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 8.2e-108 394.4 307 70.4
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 8.2e-108 394.4 298 71.1
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 1.4e-107 393.7 300 70.0
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 2.4e-107 392.9 310 71.0
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 3.1e-107 392.5 312 68.9
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 5.3e-107 391.7 307 69.4
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 6.9e-107 391.3 309 69.3
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 6.9e-107 391.3 307 69.4
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 9.0e-107 391.0 300 70.0
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 9.0e-107 391.0 300 70.0
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 2.0e-106 389.8 305 69.8
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 2.0e-106 389.8 302 70.2
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 4.5e-106 388.7 307 68.7
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 7.7e-106 387.9 310 67.4
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 1.7e-105 386.7 307 67.8
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.7e-105 386.7 312 67.6
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 2.2e-105 386.3 309 68.3
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 2.2e-105 386.3 312 71.8
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 1.1e-104 384.0 302 69.9
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 1.4e-104 383.6 301 74.1
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 1.4e-104 383.6 299 68.9
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 1.9e-104 383.3 310 71.9
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 3.2e-104 382.5 314 66.6
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.2e-103 380.6 309 67.3
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 2.1e-103 379.8 312 67.0
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 4.6e-103 378.6 305 71.1
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 4.6e-103 378.6 312 66.7
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 6.1e-103 378.3 312 69.6
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.4e-102 377.1 302 70.9
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.8e-102 376.7 313 69.6
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 1.8e-102 376.7 300 70.3
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 1.8e-102 376.7 312 66.3
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 1.8e-102 376.7 302 67.9
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 3.9e-102 375.6 297 72.1
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 3.9e-102 375.6 300 67.7
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 5.1e-102 375.2 312 68.9
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 5.1e-102 375.2 299 67.9
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 6.7e-102 374.8 299 71.9
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 8.8e-102 374.4 300 69.7
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.1e-101 374.0 305 69.8
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 9.7e-101 370.9 312 68.3
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.3e-100 370.5 312 67.9
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 1.3e-100 370.5 314 64.6
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 1.3e-100 370.5 310 69.7
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 4.8e-100 368.6 300 68.3
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 4.8e-100 368.6 319 65.5
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 4.8e-100 368.6 300 67.0
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 6.3e-100 368.2 304 67.8
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 6.3e-100 368.2 300 70.3
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 8.2e-100 367.9 299 70.2
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 8.2e-100 367.9 298 68.1
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 1.4e-99 367.1 313 68.7
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.4e-99 367.1 290 71.7
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 1.8e-99 366.7 297 69.7
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 2.4e-99 366.3 304 69.1
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 3.1e-99 365.9 297 71.0
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 5.3e-99 365.2 298 69.5
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 5.3e-99 365.2 300 69.0
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 6.9e-99 364.8 319 67.1
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 6.9e-99 364.8 306 64.4
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 1.2e-98 364.0 319 66.8
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 1.5e-98 363.6 313 67.1
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 3.4e-98 362.5 308 69.2
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 4.5e-98 362.1 300 68.3
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 4.5e-98 362.1 303 69.0
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 4.5e-98 362.1 300 67.7
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 4.5e-98 362.1 303 68.6
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 5.9e-98 361.7 300 67.0
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 1.0e-97 360.9 301 68.8
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 1.0e-97 360.9 301 68.8
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 1.7e-97 360.1 308 69.2
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 1.7e-97 360.1 301 68.8
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 1.7e-97 360.1 301 68.4
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 5.0e-97 358.6 304 68.4
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 5.0e-97 358.6 299 68.9
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 1.9e-96 356.7 300 68.3
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 3.2e-96 355.9 298 68.8
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 2.1e-95 353.2 294 69.0
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 3.6e-95 352.4 299 67.2
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 4.7e-95 352.1 315 64.8
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 7.9e-95 351.3 316 63.0
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.0e-94 350.9 300 66.3
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 5.1e-94 348.6 301 67.4
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 5.7e-93 345.1 295 67.1
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 7.4e-93 344.7 297 66.0
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.3e-92 344.0 312 64.7
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 1.7e-92 343.6 313 61.0
HPP92_007745 Vanilla planifolia HOM05D004553 ORTHO05D005426 6.3e-92 341.7 308 64.9
SalBow6G2244 Salvia bowleyana HOM05D004553 ORTHO05D005426 2.4e-91 339.7 312 65.4
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 1.2e-90 337.4 292 67.5
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 1.5e-90 337.0 295 66.8
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 1.3e-89 334.0 295 66.1
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 8.5e-89 331.3 300 65.7
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 8.0e-87 324.7 285 65.6
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 7.0e-83 311.6 243 69.1
vmacro06125 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.6e-82 309.7 320 57.8
vmacro02641 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 2.2e-81 306.6 307 60.9
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 2.0e-77 293.5 244 66.8
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 4.4e-69 265.8 219 67.1
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 2.4e-67 260.0 298 57.0
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 7.0e-67 258.5 298 57.4
Pp3c11_17490 Physcomitrium patens HOM05D004553 ORTHO05D005426 3.7e-60 236.1 292 54.8
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 1.1e-59 234.6 240 58.3
SMO304G0012 Selaginella moellendorffii HOM05D004553 ORTHO05D005426 2.5e-56 223.4 298 54.4
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 3.3e-56 223.0 211 63.5
Cre10.g435550 Chlamydomonas reinhardtii HOM05D004553 ORTHO05D005426 1.2e-53 214.5 305 46.2
HPP92_007825 Vanilla planifolia HOM05D004553 ORTHO05D005426 1.2e-53 214.5 259 54.4
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 9.2e-51 204.9 209 56.9
CBR_g46193 Chara braunii HOM05D004553 ORTHO05D005426 6.0e-50 202.2 325 44.3
Psat2g052960 Pisum sativum HOM05D004553 ORTHO05D005426 4.3e-48 196.1 201 58.2
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 3.9e-41 172.9 127 70.1
MCO15G119 Micromonas commoda HOM05D004553 ORTHO05D005426 8.6e-41 171.8 324 39.8
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 1.1e-40 171.4 308 43.8
Haze_27369 Corylus avellana HOM05D004553 ORTHO05D005426 1.4e-38 164.5 284 37.3
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 2.4e-35 153.7 128 66.4
SEGI_33857 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 8.6e-33 145.2 120 65.0
Nn1g02691 Nelumbo nucifera HOM05D004553 ORTHO05D005426 1.9e-32 144.1 95 76.8
SEGI_01794 Sequoiadendron giganteum HOM05D004553 ORTHO05D005426 8.9e-30 135.2 90 75.6
CDE04G0333 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 9.3e-27 125.2 80 77.5
Oeu058648.1 Olea europaea HOM05D004553 ORTHO05D005426 2.5e-24 117.1 129 50.4
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 3.6e-23 113.2 93 67.7
AT3G62530 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 5.3e-22 109.4 204 38.2
Oeu044898.1 Olea europaea HOM05D004553 ORTHO05D005426 1.7e-20 104.4 215 38.1
CARHR168550 Cardamine hirsuta HOM05D004553 ORTHO05D005426 3.8e-20 103.2 58 86.2
SHI26037 Sapria himalayana HOM05D004553 ORTHO05D000023 1.1e-19 101.7 158 41.8
BcaC01g01031 Brassica carinata HOM05D004553 ORTHO05D005426 1.2e-18 98.2 162 43.2
C03p87400 Brassica napus HOM05D004553 ORTHO05D005426 1.2e-18 98.2 162 43.2
BolC3t21049H Brassica oleracea HOM05D004553 ORTHO05D005426 1.2e-18 98.2 162 43.2
Oeu016862.1 Olea europaea HOM05D004553 ORTHO05D005426 3.0e-17 93.6 84 60.7
FvH4_2g19410 Fragaria vesca HOM05D004553 ORTHO05D005426 2.5e-16 90.5 69 66.7
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.3e-16 89.7 176 39.8
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 1.4e-14 84.7 74 63.5
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 1.1e-11 75.1 74 55.4
Oeu041828.1 Olea europaea HOM05D004553 ORTHO05D005426 1.9e-11 74.3 78 46.2
Nitab4.5_0002915g0080 Nicotiana tabacum HOM05D000693 ORTHO05D001102 3.3e-08 63.5 111 38.7


User provided reference genes

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