Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0794G033 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.3e-102 376.3 187 100.0
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 1.7e-76 289.7 176 84.7
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 1.8e-67 259.6 179 74.9
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 4.1e-67 258.5 178 73.0
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 4.1e-67 258.5 178 73.0
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 5.3e-67 258.1 178 73.0
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 9.1e-67 257.3 179 73.7
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 1.2e-66 256.9 178 72.5
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 1.2e-66 256.9 178 72.5
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 1.2e-66 256.9 179 73.7
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 1.2e-66 256.9 178 73.6
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 1.5e-66 256.5 177 74.6
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 2.6e-66 255.8 179 73.2
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 3.5e-66 255.4 179 74.3
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 4.5e-66 255.0 179 73.2
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 4.5e-66 255.0 179 73.2
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 5.9e-66 254.6 179 70.9
Cc09_g04230 Coffea canephora HOM05D003442 ORTHO05D004005 1.0e-65 253.8 179 73.7
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 1.7e-65 253.1 178 73.0
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 2.2e-65 252.7 176 71.6
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 2.2e-65 252.7 174 73.6
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 2.9e-65 252.3 179 73.7
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 3.8e-65 251.9 178 72.5
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 5.0e-65 251.5 179 73.2
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 5.0e-65 251.5 178 70.8
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 8.5e-65 250.8 178 72.5
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 1.1e-64 250.4 178 70.8
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 1.5e-64 250.0 179 72.1
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 1.5e-64 250.0 178 71.9
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 1.9e-64 249.6 177 70.6
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 1.9e-64 249.6 179 71.5
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 2.5e-64 249.2 179 70.4
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.5e-64 249.2 177 70.1
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 2.5e-64 249.2 177 70.1
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 2.5e-64 249.2 179 72.6
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 3.2e-64 248.8 179 70.9
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 3.2e-64 248.8 178 71.3
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 3.2e-64 248.8 173 72.3
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 3.2e-64 248.8 178 70.2
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 3.2e-64 248.8 179 69.8
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 4.2e-64 248.4 178 71.3
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 4.2e-64 248.4 179 72.6
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 5.5e-64 248.1 179 70.9
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 7.2e-64 247.7 179 70.9
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 7.2e-64 247.7 179 70.9
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 9.4e-64 247.3 179 71.5
VMungo0251G1146 Vigna mungo HOM05D003442 ORTHO05D004005 9.4e-64 247.3 179 71.5
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 1.2e-63 246.9 178 73.0
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 1.6e-63 246.5 179 70.9
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.6e-63 246.5 177 69.5
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 2.7e-63 245.7 174 71.3
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 2.7e-63 245.7 177 69.5
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 3.6e-63 245.4 179 69.8
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 3.6e-63 245.4 178 72.5
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 3.6e-63 245.4 179 70.9
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 4.7e-63 245.0 179 70.4
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 6.1e-63 244.6 179 68.7
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 8.0e-63 244.2 163 77.9
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 8.0e-63 244.2 178 70.8
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 8.0e-63 244.2 178 70.2
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 8.0e-63 244.2 178 70.2
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 8.0e-63 244.2 179 69.8
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 8.0e-63 244.2 179 69.8
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 8.0e-63 244.2 179 71.5
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 1.4e-62 243.4 179 68.2
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 2.3e-62 242.7 179 69.8
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 2.3e-62 242.7 179 69.8
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 2.3e-62 242.7 179 69.8
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 3.0e-62 242.3 178 69.7
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 3.0e-62 242.3 179 69.8
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 5.2e-62 241.5 179 69.8
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 5.2e-62 241.5 179 68.2
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 6.7e-62 241.1 157 78.3
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 8.8e-62 240.7 179 69.3
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 8.8e-62 240.7 178 69.1
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.5e-61 240.0 179 68.2
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 1.5e-61 240.0 179 70.9
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 2.0e-61 239.6 170 70.0
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 2.6e-61 239.2 179 68.2
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 3.3e-61 238.8 157 77.7
Psat4g090760 Pisum sativum HOM05D003442 ORTHO05D004005 3.3e-61 238.8 179 69.3
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 4.4e-61 238.4 178 69.7
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 4.4e-61 238.4 179 69.8
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 7.5e-61 237.7 174 69.0
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 9.7e-61 237.3 178 68.0
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 9.7e-61 237.3 179 71.5
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 1.7e-60 236.5 178 68.5
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.7e-60 236.5 178 66.9
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 3.7e-60 235.3 177 69.5
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 3.7e-60 235.3 178 68.0
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 4.8e-60 235.0 174 69.0
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 4.8e-60 235.0 191 67.0
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 4.8e-60 235.0 179 67.6
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 8.2e-60 234.2 178 66.3
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 8.2e-60 234.2 191 63.9
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.1e-59 233.8 178 67.4
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 1.4e-59 233.4 178 66.3
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 1.4e-59 233.4 176 67.6
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 3.1e-59 232.3 179 66.5
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 4.1e-59 231.9 177 66.1
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 4.1e-59 231.9 179 66.5
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 5.3e-59 231.5 179 65.9
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 5.3e-59 231.5 179 65.9
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 5.3e-59 231.5 179 65.9
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 7.0e-59 231.1 172 68.6
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 9.1e-59 230.7 179 68.2
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 2.0e-58 229.6 178 66.9
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 2.6e-58 229.2 179 65.4
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 7.7e-58 227.6 179 63.7
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.7e-57 226.5 185 66.5
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 1.7e-57 226.5 185 66.5
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 1.7e-57 226.5 178 65.7
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 2.2e-57 226.1 176 64.2
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 3.8e-57 225.3 162 70.4
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 5.0e-57 224.9 176 63.1
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 1.1e-56 223.8 178 65.2
SalBow1G1076 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.5e-56 222.6 178 66.3
SalBow1G3564 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.5e-56 222.6 178 66.3
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 2.5e-56 222.6 176 63.6
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 2.5e-56 222.6 176 64.2
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 1.6e-55 219.9 174 67.2
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 1.6e-55 219.9 180 65.0
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 2.1e-55 219.5 175 62.3
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 3.0e-54 215.7 180 62.2
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 8.8e-54 214.2 178 62.9
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 2.6e-53 212.6 179 62.0
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 5.7e-53 211.5 153 68.6
SHI02588 Sapria himalayana HOM05D000002 ORTHO05D000001 2.4e-51 206.1 208 54.3
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 5.9e-50 201.4 203 56.2
TAR365G0691 Trochodendron aralioides HOM05D003442 ORTHO05D004005 2.9e-49 199.1 124 83.1
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 3.8e-49 198.7 259 47.5
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 6.5e-49 198.0 125 79.2
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 4.2e-48 195.3 152 66.4
Oeu001224.1 Olea europaea HOM05D003442 ORTHO05D004005 2.1e-47 193.0 128 75.0
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 4.0e-46 188.7 148 66.2
Oeu062031.1 Olea europaea HOM05D003442 ORTHO05D004005 8.8e-46 187.6 131 67.9
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 1.5e-45 186.8 178 58.4
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 1.5e-45 186.8 178 58.4
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 5.7e-45 184.9 171 55.6
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 5.7e-45 184.9 178 57.9
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 8.3e-44 181.0 174 59.8
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 2.4e-43 179.5 175 52.0
Actinidia07920 Actinidia chinensis HOM05D003442 ORTHO05D004005 4.5e-42 175.3 150 64.7
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.0e-41 174.1 176 53.4
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 2.3e-41 172.9 174 52.9
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 2.3e-41 172.9 174 52.9
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 1.9e-40 169.9 170 50.6
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 3.3e-40 169.1 185 50.8
CANSAT35G0263 Cannabis sativa HOM05D003442 ORTHO05D004005 2.0e-37 159.8 148 53.4
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 3.2e-35 152.5 178 50.0
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 1.0e-33 147.5 166 44.0
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 1.1e-32 144.1 178 47.2
CARHR242670 Cardamine hirsuta HOM05D003442 ORTHO05D004005 5.6e-32 141.7 110 67.3
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 2.1e-31 139.8 188 39.4
Zm00001eb106630 Zea mays HOM05D003442 ORTHO05D004005 3.7e-28 129.0 110 59.1
Rhsim04G0133200 Rhododendron simsii HOM05D003442 ORTHO05D004005 3.0e-25 119.4 122 55.7
CARHR242660 Cardamine hirsuta HOM05D003442 ORTHO05D004005 3.6e-23 112.5 71 77.5
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 7.8e-18 94.7 173 34.7
Nitab4.5_0009666g0010 Nicotiana tabacum HOM05D008541 ORTHO05D010458 2.1e-15 86.7 66 60.6
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 1.3e-12 77.4 138 36.2
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 6.4e-12 75.1 154 31.2
MD01G1238200 Malus domestica HOM05D003442 ORTHO05D004005 1.4e-11 73.9 50 78.0
AL7G17200 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 2.7e-10 69.7 111 40.5
AL7G17190 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 4.3e-08 62.4 43 74.4


User provided reference genes

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