Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 1.8e-173 612.5 301 100.0
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 1.3e-43 181.0 303 36.6
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 2.8e-41 173.3 280 38.6
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 2.2e-38 163.7 284 35.6
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 1.4e-37 161.0 283 36.0
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 7.1e-37 158.7 283 36.4
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 7.8e-36 155.2 273 34.4
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 3.3e-34 149.8 272 34.2
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 4.3e-34 149.4 282 32.6
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 2.8e-33 146.7 293 33.4
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 3.6e-33 146.4 307 30.9
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.4e-32 144.4 285 32.3
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.4e-32 144.4 285 32.3
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.8e-32 144.1 296 31.8
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 9.0e-32 141.7 282 33.0
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 9.0e-32 141.7 282 33.0
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.2e-31 141.4 233 35.6
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 2.0e-31 140.6 281 32.0
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 3.4e-31 139.8 286 32.2
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.3e-30 137.9 282 32.3
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 2.2e-30 137.1 280 32.9
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 2.9e-30 136.7 281 31.7
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 4.9e-30 136.0 286 30.4
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 8.4e-30 135.2 291 32.3
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.1e-29 134.8 291 30.2
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 1.9e-29 134.0 291 31.3
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 3.2e-29 133.3 287 30.7
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.2e-29 133.3 282 31.2
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 5.4e-29 132.5 276 29.3
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 5.4e-29 132.5 289 32.5
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 1.2e-28 131.3 282 29.8
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 2.1e-28 130.6 292 30.8
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.3e-27 127.9 279 28.0
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 3.9e-27 126.3 293 30.0
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 5.1e-27 125.9 269 30.9
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 6.6e-27 125.6 292 30.1
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 6.6e-27 125.6 271 31.7
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.1e-26 124.8 286 30.4
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 1.1e-26 124.8 270 30.0
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 1.1e-26 124.8 271 27.7
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.1e-26 124.8 271 27.7
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 1.1e-26 124.8 271 27.7
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 1.5e-26 124.4 279 30.1
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.5e-26 124.4 282 30.5
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.5e-26 124.4 255 28.2
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 3.3e-26 123.2 271 27.7
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 3.3e-26 123.2 297 29.6
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 4.3e-26 122.9 292 28.8
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.3e-26 122.9 280 31.1
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 5.6e-26 122.5 284 28.9
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 7.3e-26 122.1 286 29.4
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 9.6e-26 121.7 272 30.9
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 1.3e-25 121.3 282 28.4
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.6e-25 120.9 282 28.7
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.6e-25 120.9 282 29.1
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 2.8e-25 120.2 251 31.1
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 3.6e-25 119.8 282 28.4
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 6.2e-25 119.0 266 30.5
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 6.2e-25 119.0 284 28.9
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 6.2e-25 119.0 282 30.5
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 6.2e-25 119.0 278 29.9
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 8.1e-25 118.6 292 29.1
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 1.1e-24 118.2 250 32.0
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.4e-24 117.9 282 28.7
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 1.4e-24 117.9 247 30.8
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 2.4e-24 117.1 258 29.1
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 3.1e-24 116.7 273 28.6
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.0e-24 116.3 280 27.9
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 1.2e-23 114.8 274 26.6
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.2e-23 114.8 276 28.6
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.0e-23 114.0 298 26.8
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 3.4e-23 113.2 259 27.4
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 4.5e-23 112.8 274 31.0
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 5.8e-23 112.5 279 31.5
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 9.9e-23 111.7 287 28.2
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 9.9e-23 111.7 272 29.4
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.3e-22 111.3 293 26.3
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.3e-22 111.3 293 26.3
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.3e-22 111.3 274 28.8
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 1.3e-22 111.3 274 28.1
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 2.2e-22 110.5 280 28.2
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 2.2e-22 110.5 277 29.2
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.8e-22 109.8 282 28.7
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 3.8e-22 109.8 249 30.9
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 4.9e-22 109.4 245 29.4
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 8.4e-22 108.6 275 28.0
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.1e-21 108.2 275 29.5
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.1e-21 108.2 296 28.0
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 1.4e-21 107.8 268 29.5
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 1.9e-21 107.5 279 27.6
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 2.4e-21 107.1 290 28.3
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 2.4e-21 107.1 240 30.4
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 3.2e-21 106.7 262 27.9
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 3.2e-21 106.7 274 28.8
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.2e-21 106.3 268 26.9
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 4.2e-21 106.3 274 26.6
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.2e-20 104.8 278 28.8
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 1.2e-20 104.8 276 26.4
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 2.1e-20 104.0 279 29.0
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.7e-20 103.6 293 27.3
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 3.5e-20 103.2 279 30.1
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 4.6e-20 102.8 281 28.5
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 6.0e-20 102.4 290 27.6
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 7.9e-20 102.1 258 28.3
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 7.9e-20 102.1 262 28.2
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.0e-19 101.7 290 27.2
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.8e-19 100.9 269 26.4
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 2.3e-19 100.5 277 28.9
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 3.0e-19 100.1 291 25.8
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 3.9e-19 99.8 286 26.9
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 6.7e-19 99.0 275 27.6
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 6.7e-19 99.0 279 29.7
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 8.7e-19 98.6 271 26.9
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 8.7e-19 98.6 278 27.3
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.5e-18 97.8 275 27.6
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.5e-18 97.8 287 26.1
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.9e-18 97.4 235 28.5
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 2.5e-18 97.1 277 28.2
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 4.3e-18 96.3 283 29.7
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 5.6e-18 95.9 280 28.9
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 9.6e-18 95.1 279 28.3
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 1.3e-17 94.7 281 29.5
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 2.1e-17 94.0 282 29.1
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 2.1e-17 94.0 269 28.3
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.1e-17 94.0 287 27.9
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 4.8e-17 92.8 248 28.6
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 6.2e-17 92.4 271 27.3
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 5.3e-16 89.4 306 26.8
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 9.0e-16 88.6 302 26.2
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 1.5e-15 87.8 246 28.0
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 3.4e-15 86.7 232 27.2
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 4.5e-15 86.3 228 27.2
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 7.6e-15 85.5 292 31.2
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 2.9e-14 83.6 274 25.9
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 4.9e-14 82.8 232 26.7
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 6.4e-14 82.4 276 25.4
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 6.4e-14 82.4 249 28.5
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 8.4e-14 82.0 233 27.0
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 1.1e-13 81.6 296 29.4
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 1.9e-13 80.9 277 24.9
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 4.2e-13 79.7 229 30.1
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 4.6e-12 76.3 282 26.6
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 6.0e-12 75.9 233 27.5
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 7.9e-12 75.5 234 22.6
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 1.5e-10 71.2 281 24.6
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 4.3e-10 69.7 236 25.4
RcHm_v2.0_Chr4g0406051 Rosa chinensis HOM05D003538 ORTHO05D004376 7.4e-10 68.9 177 27.1
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 1.3e-09 68.2 243 25.9
Pp3c10_12370 Physcomitrium patens HOM05D003538 ORTHO05D004376 3.7e-09 66.6 247 25.5
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 8.2e-09 65.5 243 25.5
RcHm_v2.0_Chr4g0425381 Rosa chinensis HOM05D003538 ORTHO05D004376 2.4e-08 63.9 184 27.2
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 4.0e-08 63.2 175 25.7
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 5.3e-08 62.8 330 20.9
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 2.6e-07 60.5 274 23.4


User provided reference genes

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