Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0789G158 Amborella trichopoda HOM05D003456 ORTHO05D004082 1.9e-31 138.7 75 100.0
ATR0789G023 Amborella trichopoda HOM05D003456 ORTHO05D004082 7.2e-23 110.2 62 93.5
Prupe.7G111000 Prunus persica HOM05D003456 ORTHO05D004082 1.1e-18 96.3 63 76.2
Ciclev10013682m.g Citrus clementina HOM05D003456 ORTHO05D004082 1.8e-18 95.5 69 69.6
AUR62013762 Chenopodium quinoa HOM05D003456 ORTHO05D004082 2.4e-18 95.1 61 77.0
MD14G1022300 Malus domestica HOM05D003456 ORTHO05D004082 2.4e-18 95.1 63 71.4
MD12G1035500 Malus domestica HOM05D003456 ORTHO05D004082 3.1e-18 94.7 63 73.0
Manes.09G055901 Manihot esculenta HOM05D003456 ORTHO05D004082 3.1e-18 94.7 63 76.2
TAR633G0109 Trochodendron aralioides HOM05D003456 ORTHO05D004082 4.1e-18 94.4 63 74.6
RcHm_v2.0_Chr6g0270521 Rosa chinensis HOM05D003456 ORTHO05D004082 5.3e-18 94.0 63 74.6
TAR636G2922 Trochodendron aralioides HOM05D003456 ORTHO05D004082 7.0e-18 93.6 63 74.6
Dinv21215 Davidia involucrata HOM05D003456 ORTHO05D004082 9.1e-18 93.2 63 74.6
Zm00001eb334200 Zea mays HOM05D003456 ORTHO05D004082 9.1e-18 93.2 63 79.4
Cpa.g.sc5.27 Carica papaya HOM05D003456 ORTHO05D004082 1.2e-17 92.8 63 73.0
AUR62023392 Chenopodium quinoa HOM05D003456 ORTHO05D004082 1.2e-17 92.8 59 78.0
Glyma.03G195000 Glycine max HOM05D003456 ORTHO05D004082 1.2e-17 92.8 63 73.0
Os12g0485500 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 1.2e-17 92.8 63 73.0
CDE02G3384 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 1.6e-17 92.4 63 73.0
VMungo1383G3423 Vigna mungo HOM05D003456 ORTHO05D004082 3.5e-17 91.3 63 71.4
Zm00001eb126830 Zea mays HOM05D003456 ORTHO05D004082 3.5e-17 91.3 63 77.8
RcHm_v2.0_Chr3g0473171 Rosa chinensis HOM05D003456 ORTHO05D004082 4.5e-17 90.9 63 74.6
GSVIVG01033834001 Vitis vinifera HOM05D003456 ORTHO05D004082 4.5e-17 90.9 63 76.2
Lj1g0011692 Lotus japonicus HOM05D003456 ORTHO05D004082 7.7e-17 90.1 63 71.4
vmacro10309 Vaccinium macrocarpon HOM05D003456 ORTHO05D004082 7.7e-17 90.1 64 68.8
ClCG05G018420 Citrullus lanatus HOM05D003456 ORTHO05D004082 1.0e-16 89.7 62 72.6
Dinv09618 Davidia involucrata HOM05D003456 ORTHO05D004082 1.0e-16 89.7 62 71.0
Hma1.2p1_0232F.1_g097840 Hydrangea macrophylla HOM05D003456 ORTHO05D004082 1.0e-16 89.7 63 71.4
Lalb_Chr20g0111761 Lupinus albus HOM05D003456 ORTHO05D004082 1.0e-16 89.7 63 73.0
Solyc09g009440.3 Solanum lycopersicum HOM05D003456 ORTHO05D004082 1.0e-16 89.7 64 71.9
ClCG05G021780 Citrullus lanatus HOM05D003456 ORTHO05D004082 1.3e-16 89.4 62 71.0
PSO339G3466 Papaver somniferum HOM05D003456 ORTHO05D004082 1.3e-16 89.4 63 69.8
Atru.chr8.1550 Acer truncatum HOM05D003456 ORTHO05D004082 1.7e-16 89.0 63 68.3
arahy.Tifrunner.gnm1.ann1.C03M9B Arachis hypogaea HOM05D003456 ORTHO05D004082 1.7e-16 89.0 63 69.8
arahy.Tifrunner.gnm1.ann1.VF2KJZ Arachis hypogaea HOM05D003456 ORTHO05D004082 1.7e-16 89.0 63 69.8
FAN02G4247 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.7e-16 89.0 63 73.0
FAN09G3852 Fragaria x ananassa HOM05D003456 ORTHO05D004082 1.7e-16 89.0 63 73.0
TWI53G1385 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 1.7e-16 89.0 63 71.4
BolC3t18012H Brassica oleracea HOM05D003456 ORTHO05D004082 2.2e-16 88.6 63 69.8
Haze_19603 Corylus avellana HOM05D003456 ORTHO05D004082 2.2e-16 88.6 64 73.4
FvH4_6g18590 Fragaria vesca HOM05D003456 ORTHO05D004082 2.2e-16 88.6 63 73.0
FAN05G5536 Fragaria x ananassa HOM05D003456 ORTHO05D004082 2.2e-16 88.6 63 73.0
FAN14G1410 Fragaria x ananassa HOM05D003456 ORTHO05D004082 2.2e-16 88.6 63 73.0
Nitab4.5_0001725g0170 Nicotiana tabacum HOM05D003456 ORTHO05D004082 2.2e-16 88.6 66 69.7
Oeu054399.2 Olea europaea HOM05D003456 ORTHO05D004082 2.2e-16 88.6 66 66.7
TWI74G0284 Tripterygium wilfordii HOM05D003456 ORTHO05D004082 2.2e-16 88.6 63 71.4
MELO3C012350.2 Cucumis melo HOM05D003456 ORTHO05D004082 2.9e-16 88.2 62 71.0
arahy.Tifrunner.gnm1.ann1.KEI5RC Arachis hypogaea HOM05D003456 ORTHO05D004082 3.8e-16 87.8 63 69.8
ECA233G4183 Erigeron canadensis HOM05D003456 ORTHO05D004082 3.8e-16 87.8 61 72.1
CAN.G397.10 Capsicum annuum HOM05D003456 ORTHO05D004082 5.0e-16 87.4 63 71.4
CARHR106940 Cardamine hirsuta HOM05D003456 ORTHO05D004082 5.0e-16 87.4 62 69.4
Cfa016601 Carpinus fangiana HOM05D003456 ORTHO05D004082 5.0e-16 87.4 64 71.9
CDE11G1238 Ceratophyllum demersum HOM05D003456 ORTHO05D004082 5.0e-16 87.4 57 73.7
Nitab4.5_0005483g0040 Nicotiana tabacum HOM05D003456 ORTHO05D004082 5.0e-16 87.4 63 71.4
Sopen09g004180 Solanum pennellii HOM05D003456 ORTHO05D004082 5.0e-16 87.4 63 71.4
arahy.Tifrunner.gnm1.ann1.P2449T Arachis hypogaea HOM05D003456 ORTHO05D004082 6.5e-16 87.0 63 68.3
CiPaw.09G013300 Carya illinoinensis HOM05D003456 ORTHO05D004082 6.5e-16 87.0 63 73.0
Eucgr.J00259 Eucalyptus grandis HOM05D003456 ORTHO05D004082 6.5e-16 87.0 62 71.0
Rhsim03G0097900 Rhododendron simsii HOM05D003456 ORTHO05D004082 6.5e-16 87.0 62 69.4
AL3G49380 Arabidopsis lyrata HOM05D003456 ORTHO05D004082 8.5e-16 86.7 62 69.4
BraA03t13724Z Brassica rapa HOM05D003456 ORTHO05D004082 8.5e-16 86.7 65 66.2
FAN05G2371 Fragaria x ananassa HOM05D003456 ORTHO05D004082 8.5e-16 86.7 63 71.4
Glyma.19G194700 Glycine max HOM05D003456 ORTHO05D004082 8.5e-16 86.7 63 68.3
Nn2g14150 Nelumbo nucifera HOM05D003456 ORTHO05D004082 8.5e-16 86.7 61 70.5
PGSC0003DMG401002701 Solanum tuberosum HOM05D003456 ORTHO05D004082 8.5e-16 86.7 63 71.4
AT2G16710 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 1.1e-15 86.3 62 67.7
EL10Ac1g00743 Beta vulgaris HOM05D003456 ORTHO05D004082 1.1e-15 86.3 61 72.1
BcaC01g02994 Brassica carinata HOM05D003456 ORTHO05D004082 1.1e-15 86.3 62 69.4
A03p45960 Brassica napus HOM05D003456 ORTHO05D004082 1.1e-15 86.3 62 69.4
C03p57360 Brassica napus HOM05D003456 ORTHO05D004082 1.1e-15 86.3 62 69.4
Carub.0001s3604 Capsella rubella HOM05D003456 ORTHO05D004082 1.1e-15 86.3 62 69.4
Phvul.001G189600 Phaseolus vulgaris HOM05D003456 ORTHO05D004082 1.1e-15 86.3 63 68.3
Potri.008G020400 Populus trichocarpa HOM05D003456 ORTHO05D004082 1.1e-15 86.3 62 71.0
Sp3g30040 Schrenkiella parvula HOM05D003456 ORTHO05D004082 1.1e-15 86.3 62 69.4
Thecc.09G106900 Theobroma cacao HOM05D003456 ORTHO05D004082 1.1e-15 86.3 64 71.9
PSO170G1366 Papaver somniferum HOM05D003456 ORTHO05D004082 1.5e-15 85.9 63 68.3
PSO407G0116 Papaver somniferum HOM05D003456 ORTHO05D004082 1.5e-15 85.9 63 68.3
Hund06781 Selenicereus undatus HOM05D003456 ORTHO05D004082 1.5e-15 85.9 64 70.3
Duzib128G1248 Durio zibethinus HOM05D003456 ORTHO05D004082 1.9e-15 85.5 64 70.3
Atru.chr12.1024 Acer truncatum HOM05D003456 ORTHO05D004082 2.5e-15 85.1 62 71.0
Aa31LG8G13940 Aethionema arabicum HOM05D003456 ORTHO05D004082 2.5e-15 85.1 61 67.2
Psat6g013760 Pisum sativum HOM05D003456 ORTHO05D004082 2.5e-15 85.1 63 66.7
TPR.G9901 Trifolium pratense HOM05D003456 ORTHO05D004082 2.5e-15 85.1 63 66.7
FAN24G1424 Fragaria x ananassa HOM05D003456 ORTHO05D004082 3.2e-15 84.7 63 69.8
Sc20g0001150 Simmondsia chinensis HOM05D003456 ORTHO05D004082 3.2e-15 84.7 63 69.8
CiPaw.13G039000 Carya illinoinensis HOM05D003456 ORTHO05D004082 4.2e-15 84.3 62 67.7
Ca_08885_v3 Cicer arietinum L. HOM05D003456 ORTHO05D004082 4.2e-15 84.3 63 65.1
Psat4g110960 Pisum sativum HOM05D003456 ORTHO05D004082 4.2e-15 84.3 63 66.7
Actinidia31104 Actinidia chinensis HOM05D003456 ORTHO05D004082 5.5e-15 84.0 62 66.1
COL.COLO4_29759 Corchorus olitorius HOM05D003456 ORTHO05D004082 5.5e-15 84.0 64 68.8
Lsat_1_v5_gn_8_24141 Lactuca sativa HOM05D003456 ORTHO05D004082 5.5e-15 84.0 64 70.3
Oeu024811.2 Olea europaea HOM05D003456 ORTHO05D004082 5.5e-15 84.0 63 61.9
Sabra10G0187000 Salix brachista HOM05D003456 ORTHO05D004082 5.5e-15 84.0 62 67.7
CSS0039541 Camellia sinensis var. sinensis HOM05D003456 ORTHO05D004082 7.2e-15 83.6 62 66.1
Carub.0003s3046 Capsella rubella HOM05D003456 ORTHO05D004082 7.2e-15 83.6 61 67.2
Ciclev10017146m.g Citrus clementina HOM05D003456 ORTHO05D004082 7.2e-15 83.6 56 69.6
Lalb_Chr25g0288351 Lupinus albus HOM05D003456 ORTHO05D004082 7.2e-15 83.6 63 66.7
Potri.010G238800 Populus trichocarpa HOM05D003456 ORTHO05D004082 7.2e-15 83.6 62 67.7
Rhsim09G0141900 Rhododendron simsii HOM05D003456 ORTHO05D004082 7.2e-15 83.6 53 75.5
Actinidia34723 Actinidia chinensis HOM05D003456 ORTHO05D004082 9.4e-15 83.2 62 64.5
Thhalv10022903m.g Eutrema salsugineum HOM05D003456 ORTHO05D004082 9.4e-15 83.2 62 67.7
PGR044G1450 Punica granatum HOM05D003456 ORTHO05D004082 9.4e-15 83.2 62 67.7
Hund06783 Selenicereus undatus HOM05D003456 ORTHO05D004082 9.4e-15 83.2 55 76.4
Medtr1g060070 Medicago truncatula HOM05D003456 ORTHO05D004082 1.2e-14 82.8 63 66.7
Sed0026028 Sechium edule HOM05D003456 ORTHO05D004082 1.2e-14 82.8 62 71.0
Sc09g0005350 Simmondsia chinensis HOM05D003456 ORTHO05D004082 1.2e-14 82.8 63 66.7
Aqoxy2G01205 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 1.6e-14 82.4 63 65.1
Hund22272 Selenicereus undatus HOM05D003456 ORTHO05D004082 1.6e-14 82.4 60 70.0
PSO151G0153 Papaver somniferum HOM05D003456 ORTHO05D004082 2.1e-14 82.0 63 65.1
BcaC04g23009 Brassica carinata HOM05D003456 ORTHO05D004082 2.7e-14 81.6 61 65.6
A09p11090 Brassica napus HOM05D003456 ORTHO05D004082 2.7e-14 81.6 62 64.5
BraA09t36751Z Brassica rapa HOM05D003456 ORTHO05D004082 2.7e-14 81.6 62 64.5
HanXRQChr08g0217241 Helianthus annuus HOM05D003456 ORTHO05D004082 2.7e-14 81.6 62 67.7
BcaB08g34660 Brassica carinata HOM05D003456 ORTHO05D004082 3.6e-14 81.3 62 66.1
FvH4_2g10490 Fragaria vesca HOM05D003456 ORTHO05D004082 4.7e-14 80.9 60 70.0
Gohir.D04G100300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 4.7e-14 80.9 64 67.2
Gorai.009G403300 Gossypium raimondii HOM05D003456 ORTHO05D004082 4.7e-14 80.9 64 67.2
QL04p044862 Quercus lobata HOM05D003456 ORTHO05D004082 4.7e-14 80.9 62 64.5
DCAR_009160 Daucus carota HOM05D003456 ORTHO05D004082 6.1e-14 80.5 63 61.9
Nn6g34911 Nelumbo nucifera HOM05D003456 ORTHO05D004082 1.0e-13 79.7 61 63.9
Cpa.g.sc56.14 Carica papaya HOM05D003456 ORTHO05D004082 1.4e-13 79.3 45 84.4
DCAR_020755 Daucus carota HOM05D003456 ORTHO05D004082 1.8e-13 79.0 63 63.5
Sabra08G0013700 Salix brachista HOM05D003456 ORTHO05D004082 1.8e-13 79.0 62 66.1
QL07p038879 Quercus lobata HOM05D003456 ORTHO05D004082 2.3e-13 78.6 57 66.7
QL07p039199 Quercus lobata HOM05D003456 ORTHO05D004082 2.3e-13 78.6 57 66.7
AagrBONN_evm.TU.Sc2ySwM_362.959 Anthoceros agrestis HOM05D003456 ORTHO05D004082 3.0e-13 78.2 56 69.6
BcaB07g31755 Brassica carinata HOM05D003456 ORTHO05D004082 4.0e-13 77.8 62 66.1
Gohir.A04G063300 Gossypium hirsutum HOM05D003456 ORTHO05D004082 4.0e-13 77.8 64 65.6
CsaV3_5G035380 Cucumis sativus L. HOM05D003456 ORTHO05D004082 5.2e-13 77.4 44 84.1
Gohir.D09G011800 Gossypium hirsutum HOM05D003456 ORTHO05D004082 5.2e-13 77.4 64 67.2
CANSAT56G1853 Cannabis sativa HOM05D003456 ORTHO05D004082 6.8e-13 77.0 63 63.5
Cc02_g09640 Coffea canephora HOM05D003456 ORTHO05D004082 6.8e-13 77.0 50 74.0
Aqoxy1G03742 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 8.8e-13 76.6 63 61.9
Aqoxy3G02826 Aquilegia oxysepala HOM05D003456 ORTHO05D004082 8.8e-13 76.6 63 61.9
C09p13080 Brassica napus HOM05D003456 ORTHO05D004082 8.8e-13 76.6 57 63.2
Mapoly0089s0049 Marchantia polymorpha HOM05D003456 ORTHO05D004082 8.8e-13 76.6 48 75.0
Cc00_g28380 Coffea canephora HOM05D003456 ORTHO05D004082 1.2e-12 76.3 51 72.5
Os01g0105800 Oryza sativa ssp. japonica HOM05D003456 ORTHO05D004082 1.2e-12 76.3 40 92.5
CANSAT56G3878 Cannabis sativa HOM05D003456 ORTHO05D004082 1.5e-12 75.9 63 63.5
Gorai.006G013800 Gossypium raimondii HOM05D003456 ORTHO05D004082 2.6e-12 75.1 64 64.1
THA.LOC104804331 Tarenaya hassleriana HOM05D003456 ORTHO05D004082 2.6e-12 75.1 64 62.5
unitig_0.g1020 Utricularia gibba HOM05D003456 ORTHO05D004082 5.7e-12 73.9 46 73.9
Nitab4.5_0011538g0030 Nicotiana tabacum HOM05D003456 ORTHO05D004082 7.5e-12 73.6 46 73.9
MSTRG.27572 Avicennia marina HOM05D003456 ORTHO05D004082 9.7e-12 73.2 46 73.9
Solyc11g006920.2 Solanum lycopersicum HOM05D003456 ORTHO05D004082 9.7e-12 73.2 46 71.7
Sopen11g002830 Solanum pennellii HOM05D003456 ORTHO05D004082 9.7e-12 73.2 46 71.7
CBR_g4764 Chara braunii HOM05D003456 ORTHO05D004082 2.2e-11 72.0 61 59.0
PGSC0003DMG400023972 Solanum tuberosum HOM05D003456 ORTHO05D004082 2.2e-11 72.0 46 71.7
SMO147G0221 Selaginella moellendorffii HOM05D003456 ORTHO05D004082 4.8e-11 70.9 62 58.1
SGA_v2.0_scaffold85G26612 Striga asiatica HOM05D003456 ORTHO05D004082 4.8e-11 70.9 46 69.6
SGA_v2.0_scaffold62G21335 Striga asiatica HOM05D003456 ORTHO05D004082 8.3e-11 70.1 63 55.6
Cc05_g02390 Coffea canephora HOM05D003456 ORTHO05D004082 1.1e-10 69.7 50 68.0
Migut.F00877 Erythranthe guttata HOM05D003456 ORTHO05D004082 1.1e-10 69.7 46 69.6
AT2G36260 Arabidopsis thaliana HOM05D003456 ORTHO05D004082 1.8e-10 68.9 46 67.4
Pp3c18_19580 Physcomitrium patens HOM05D003456 ORTHO05D004082 1.8e-10 68.9 63 55.6
SalBow6G0063 Salvia bowleyana HOM05D003456 ORTHO05D004082 1.8e-10 68.9 46 69.6
Oeu026593.1 Olea europaea HOM05D003456 ORTHO05D004082 2.4e-10 68.6 46 69.6
Migut.F01607 Erythranthe guttata HOM05D003456 ORTHO05D004082 5.3e-10 67.4 46 67.4
MCO14G517 Micromonas commoda HOM05D003456 ORTHO05D004082 5.3e-10 67.4 61 50.8
Aa31LG5G21390 Aethionema arabicum HOM05D003456 ORTHO05D004082 7.0e-10 67.0 63 54.0
SalBow6G0069 Salvia bowleyana HOM05D003456 ORTHO05D004082 9.1e-10 66.6 46 65.2
Cre09.g400775 Chlamydomonas reinhardtii HOM05D003456 ORTHO05D004082 1.0e-08 63.2 50 56.0
RcHm_v2.0_Chr6g0245041 Rosa chinensis HOM05D003456 ORTHO05D004082 2.9e-08 61.6 36 83.3
RcHm_v2.0_Chr7g0219151 Rosa chinensis HOM05D003456 ORTHO05D004082 8.5e-08 60.1 33 81.8
SMO330G0045 Selaginella moellendorffii HOM05D003456 ORTHO05D004082 2.7e-06 55.1 51 58.8


User provided reference genes

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