Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0789G156 Amborella trichopoda HOM05D000001 ORTHO05D023465 1.9e-40 168.7 82 100.0
ATR0789G155 Amborella trichopoda HOM05D000001 ORTHO05D023465 4.8e-28 127.5 67 92.5
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 2.8e-20 101.7 67 74.6
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 6.7e-14 80.5 61 62.3
Gohir.D02G007700 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.5e-13 79.3 62 58.1
Gorai.005G009200 Gossypium raimondii HOM05D000001 ORTHO05D000003 1.5e-13 79.3 62 58.1
Gohir.A02G007900 Gossypium hirsutum HOM05D000001 ORTHO05D000003 1.9e-13 79.0 62 56.5
CAN.G860.1 Capsicum annuum HOM05D000001 ORTHO05D000003 4.3e-13 77.8 62 59.7
Peaxi162Scf00043g00295 Petunia axillaris HOM05D000001 ORTHO05D000003 7.4e-13 77.0 62 56.5
Solyc04g051480.1 Solanum lycopersicum HOM05D000001 ORTHO05D000003 7.4e-13 77.0 62 58.1
Sopen04g022860 Solanum pennellii HOM05D000001 ORTHO05D000003 7.4e-13 77.0 62 58.1
PGSC0003DMG400019703 Solanum tuberosum HOM05D000001 ORTHO05D000003 7.4e-13 77.0 62 58.1
Aa31LG6G1130 Aethionema arabicum HOM05D000001 ORTHO05D000003 9.6e-13 76.6 72 52.8
Potri.004G047800 Populus trichocarpa HOM05D000001 ORTHO05D000003 9.6e-13 76.6 67 52.2
TAR626G0276 Trochodendron aralioides HOM05D000001 ORTHO05D000003 9.6e-13 76.6 64 51.6
Actinidia05652 Actinidia chinensis HOM05D000001 ORTHO05D000003 1.3e-12 76.3 62 58.1
HanXRQChr15g0481881 Helianthus annuus HOM05D000001 ORTHO05D000003 1.3e-12 76.3 72 50.0
Nn1g04205 Nelumbo nucifera HOM05D000001 ORTHO05D000003 2.8e-12 75.1 64 54.7
Sabra04G0030000 Salix brachista HOM05D000001 ORTHO05D000003 2.8e-12 75.1 67 50.7
Dinv40595 Davidia involucrata HOM05D000001 ORTHO05D000003 3.7e-12 74.7 62 53.2
Duzib235G1222 Durio zibethinus HOM05D000001 ORTHO05D000003 3.7e-12 74.7 67 52.2
QL02p061328 Quercus lobata HOM05D000001 ORTHO05D000003 3.7e-12 74.7 62 53.2
QL02p061465 Quercus lobata HOM05D000001 ORTHO05D000003 3.7e-12 74.7 62 53.2
Nitab4.5_0000471g0050 Nicotiana tabacum HOM05D000001 ORTHO05D000003 6.2e-12 73.9 62 54.8
Oeu018140.1 Olea europaea HOM05D000001 ORTHO05D000003 6.2e-12 73.9 62 58.1
QL02p103229 Quercus lobata HOM05D000001 ORTHO05D000003 8.2e-12 73.6 62 51.6
ECA236G2823 Erigeron canadensis HOM05D000001 ORTHO05D000003 1.4e-11 72.8 67 49.3
Eucgr.E03251 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.4e-11 72.8 72 48.6
Eucgr.L02158 Eucalyptus grandis HOM05D000001 ORTHO05D000003 1.4e-11 72.8 72 48.6
Lsat_1_v5_gn_7_22580 Lactuca sativa HOM05D000001 ORTHO05D000003 1.8e-11 72.4 67 46.3
Atru.BG.305.p Acer truncatum HOM05D000001 ORTHO05D000003 2.4e-11 72.0 62 53.2
CsaV3_3G016910 Cucumis sativus L. HOM05D000001 ORTHO05D000003 2.4e-11 72.0 70 48.6
Rhsim02G0216800 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.4e-11 72.0 67 52.2
COL.COLO4_31427 Corchorus olitorius HOM05D000001 ORTHO05D000003 3.1e-11 71.6 62 53.2
DCAR_008011 Daucus carota HOM05D000001 ORTHO05D000003 3.1e-11 71.6 62 54.8
Hma1.2p1_0206F.1_g087660 Hydrangea macrophylla HOM05D000001 ORTHO05D022292 4.0e-11 71.2 74 44.6
Nitab4.5_0006391g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 4.0e-11 71.2 62 53.2
Cpa.g.sc27.13 Carica papaya HOM05D000001 ORTHO05D000003 5.3e-11 70.9 62 53.2
Cfa000519 Carpinus fangiana HOM05D000001 ORTHO05D000003 5.3e-11 70.9 62 53.2
Cc02_g13720 Coffea canephora HOM05D000001 ORTHO05D000003 6.9e-11 70.5 67 50.7
SalBow5G3248 Salvia bowleyana HOM05D000001 ORTHO05D000003 6.9e-11 70.5 69 49.3
THA.LOC104798401 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 9.0e-11 70.1 61 50.8
CiPaw.10G023600 Carya illinoinensis HOM05D000001 ORTHO05D000003 1.2e-10 69.7 62 53.2
MBI06_g26560_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.2e-10 69.7 62 51.6
Migut.I00330 Erythranthe guttata HOM05D000001 ORTHO05D000003 2.0e-10 68.9 60 51.7
Sc17g0005990 Simmondsia chinensis HOM05D000001 ORTHO05D000003 2.0e-10 68.9 62 45.2
Thecc.06G182300 Theobroma cacao HOM05D000001 ORTHO05D000003 2.0e-10 68.9 62 51.6
Haze_06391 Corylus avellana HOM05D000001 ORTHO05D000003 2.6e-10 68.6 62 51.6
Manes.16G030800 Manihot esculenta HOM05D000001 ORTHO05D000003 2.6e-10 68.6 62 51.6
Hma1.2p1_1063F.1_g253530 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 3.4e-10 68.2 72 45.8
Hma1.2p1_1063F.1_g253540 Hydrangea macrophylla HOM05D000001 ORTHO05D000003 3.4e-10 68.2 72 45.8
PSO832G3771 Papaver somniferum HOM05D000001 ORTHO05D000003 4.5e-10 67.8 72 43.1
MELO3C006886.2 Cucumis melo HOM05D000001 ORTHO05D000003 5.8e-10 67.4 70 47.1
Sed0004890 Sechium edule HOM05D000001 ORTHO05D000003 5.8e-10 67.4 70 48.6
MSTRG.22986 Avicennia marina HOM05D000001 ORTHO05D000003 1.0e-09 66.6 67 50.7
Prupe.4G051600 Prunus persica HOM05D000001 ORTHO05D000003 1.0e-09 66.6 62 48.4
PGR042G0919 Punica granatum HOM05D000001 ORTHO05D000003 1.0e-09 66.6 62 46.8
TWI38G0505 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 1.0e-09 66.6 64 50.0
SGA_v2.0_scaffold313G48312 Striga asiatica HOM05D000001 ORTHO05D004820 1.7e-09 65.9 62 46.8
CANSAT54G2425 Cannabis sativa HOM05D000001 ORTHO05D000003 2.2e-09 65.5 62 48.4
MD10G1290200 Malus domestica HOM05D000001 ORTHO05D000003 2.2e-09 65.5 62 46.8
RcHm_v2.0_Chr5g0009041 Rosa chinensis HOM05D000001 ORTHO05D000003 2.2e-09 65.5 62 51.6
CSS0022819 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 2.9e-09 65.1 53 54.7
Haze_04421 Corylus avellana HOM05D004905 ORTHO05D019407 2.9e-09 65.1 62 48.4
SGA_v2.0_scaffold77G25207 Striga asiatica HOM05D000001 ORTHO05D000003 2.9e-09 65.1 62 45.2
vmacro13468 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 2.9e-09 65.1 67 46.3
Ciclev10018358m.g Citrus clementina HOM05D000001 ORTHO05D000003 6.5e-09 63.9 62 50.0
SHI19149 Sapria himalayana HOM05D000001 ORTHO05D000003 8.4e-09 63.5 62 51.6
FvH4_7g02630 Fragaria vesca HOM05D000001 ORTHO05D000003 1.1e-08 63.2 67 46.3
FAN01G0798 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.1e-08 63.2 67 46.3
FAN03G0235 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.1e-08 63.2 67 46.3
FAN06G3580 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.1e-08 63.2 67 46.3
AUR62014860 Chenopodium quinoa HOM05D000001 ORTHO05D000003 1.4e-08 62.8 64 43.8
PSO210G0619 Papaver somniferum HOM05D000001 ORTHO05D000003 1.4e-08 62.8 67 41.8
FAN25G1807 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-08 62.4 67 47.8
FAN11G1467 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.5e-08 60.8 67 47.8
FAN21G2380 Fragaria x ananassa HOM05D000001 ORTHO05D000003 7.1e-08 60.5 67 47.8
Ah.09g237550 Amaranthus hybridus HOM05D000001 ORTHO05D000003 3.5e-07 58.2 60 43.3
HPP92_016080 Vanilla planifolia HOM05D000001 ORTHO05D000003 4.6e-07 57.8 64 39.1
arahy.Tifrunner.gnm1.ann1.FN8Y8F Arachis hypogaea HOM05D000001 ORTHO05D000003 6.1e-07 57.4 72 41.7
arahy.Tifrunner.gnm1.ann1.REC9BI Arachis hypogaea HOM05D000001 ORTHO05D000003 6.1e-07 57.4 72 41.7
FAN16G0930 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.0e-06 56.6 67 46.3
SalBow2G0909 Salvia bowleyana HOM05D000001 ORTHO05D000003 1.0e-06 56.6 78 34.6
Zm00001eb183560 Zea mays HOM05D000001 ORTHO05D000003 1.3e-06 56.2 67 38.8
FvH4_5g24641 Fragaria vesca HOM05D000001 ORTHO05D000003 1.8e-06 55.8 55 43.6
Glyma.15G273200 Glycine max HOM05D000001 ORTHO05D000003 1.8e-06 55.8 67 38.8
MD10G1008400 Malus domestica HOM05D000001 ORTHO05D009429 1.8e-06 55.8 70 35.7
EL10Ac8g20429 Beta vulgaris HOM05D000001 ORTHO05D000003 2.3e-06 55.5 62 41.9
FAN08G2759 Fragaria x ananassa HOM05D002906 ORTHO05D000003 2.3e-06 55.5 57 40.4
HPP92_028541 Vanilla planifolia HOM05D000001 ORTHO05D000003 2.3e-06 55.5 56 41.1
Zm00001eb066310 Zea mays HOM05D000001 ORTHO05D010224 3.0e-06 55.1 67 34.3
FvH4_3g08720 Fragaria vesca HOM05D000001 ORTHO05D000003 3.9e-06 54.7 67 46.3
RcHm_v2.0_Chr6g0301801 Rosa chinensis HOM05D000001 ORTHO05D000003 3.9e-06 54.7 49 49.0
Phvul.003G001300 Phaseolus vulgaris HOM05D000001 ORTHO05D000003 5.1e-06 54.3 61 41.0
Thecc.03G319800 Theobroma cacao HOM05D000001 ORTHO05D000003 5.1e-06 54.3 67 38.8
BcaB07g33963 Brassica carinata HOM05D000001 ORTHO05D009739 6.7e-06 53.9 66 39.4
CDE03G0143 Ceratophyllum demersum HOM05D000001 ORTHO05D022292 6.7e-06 53.9 53 47.2
Prupe.1G227600 Prunus persica HOM05D000001 ORTHO05D000003 6.7e-06 53.9 67 32.8
VMungo0720G1398 Vigna mungo HOM05D000001 ORTHO05D010218 8.7e-06 53.5 75 30.7


User provided reference genes

Program Settings