Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 4.7e-186 654.4 345 100.0
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 1.1e-142 510.4 343 75.2
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.6e-141 506.5 345 75.7
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 1.6e-141 506.5 345 75.7
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 2.7e-141 505.8 347 76.4
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 2.7e-141 505.8 345 74.2
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 6.0e-141 504.6 345 74.8
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.0e-140 503.8 345 74.5
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 1.8e-140 503.1 345 74.2
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 1.1e-139 500.4 345 73.9
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 1.1e-139 500.4 345 73.9
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 1.5e-139 500.0 345 73.9
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.3e-139 498.8 345 73.9
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 4.3e-139 498.4 346 73.7
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 7.4e-139 497.7 345 73.0
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 1.3e-138 496.9 345 74.8
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 2.1e-138 496.1 345 72.5
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 4.8e-138 495.0 345 73.3
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 4.8e-138 495.0 345 73.0
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 4.8e-138 495.0 345 73.0
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 8.1e-138 494.2 345 73.0
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 1.8e-137 493.0 348 74.7
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 2.4e-137 492.7 346 73.4
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 3.1e-137 492.3 345 73.3
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 4.0e-137 491.9 345 73.9
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 5.3e-137 491.5 346 72.0
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 6.9e-137 491.1 345 73.9
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 9.0e-137 490.7 335 75.2
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 9.0e-137 490.7 345 73.6
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 4.5e-136 488.4 339 73.5
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 4.5e-136 488.4 345 73.3
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 5.8e-136 488.0 345 73.0
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.0e-135 487.3 345 72.2
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 1.3e-135 486.9 345 73.0
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 1.3e-135 486.9 343 72.9
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 1.7e-135 486.5 350 72.6
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 2.9e-135 485.7 345 71.6
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 6.5e-135 484.6 345 72.5
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 6.5e-135 484.6 346 72.8
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 8.4e-135 484.2 345 72.2
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 8.4e-135 484.2 345 71.6
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.4e-134 483.4 345 71.3
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 4.2e-134 481.9 343 71.4
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 4.2e-134 481.9 346 72.5
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 5.5e-134 481.5 343 71.7
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 9.3e-134 480.7 343 71.7
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 1.6e-133 479.9 343 72.0
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 1.6e-133 479.9 343 72.6
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.6e-133 479.9 342 72.8
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 2.7e-133 479.2 343 70.8
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 2.7e-133 479.2 345 70.7
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 3.5e-133 478.8 343 71.1
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 6.0e-133 478.0 343 70.8
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 6.0e-133 478.0 345 71.6
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 7.9e-133 477.6 343 71.1
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 1.3e-132 476.9 345 71.9
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 2.3e-132 476.1 341 71.0
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 3.0e-132 475.7 348 71.6
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 5.1e-132 474.9 347 70.9
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 1.9e-131 473.0 343 70.6
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 1.9e-131 473.0 343 70.6
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 1.9e-131 473.0 348 71.6
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 3.3e-131 472.2 343 70.6
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 3.3e-131 472.2 392 64.3
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 4.3e-131 471.9 343 69.4
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 4.3e-131 471.9 345 70.1
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 5.7e-131 471.5 343 70.3
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 5.7e-131 471.5 343 70.3
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 5.7e-131 471.5 343 70.3
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 2.1e-130 469.5 338 70.1
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 2.8e-130 469.2 355 68.5
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 6.3e-130 468.0 347 72.0
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 8.2e-130 467.6 355 68.5
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 3.1e-129 465.7 346 69.7
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 3.1e-129 465.7 345 70.4
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 5.3e-129 464.9 345 71.3
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 5.3e-129 464.9 367 67.8
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.2e-128 463.8 324 73.5
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 1.5e-128 463.4 337 71.8
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 7.6e-128 461.1 335 69.0
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.7e-127 459.9 345 70.1
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 2.2e-127 459.5 345 70.7
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 2.9e-127 459.1 352 68.8
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 7.2e-126 454.5 336 71.4
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 9.3e-126 454.1 342 70.5
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 1.0e-124 450.7 415 60.2
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 1.3e-124 450.3 359 66.6
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 3.0e-124 449.1 343 67.9
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 8.7e-124 447.6 339 66.7
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 2.8e-122 442.6 347 68.6
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 6.9e-121 438.0 309 72.2
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 1.5e-120 436.8 335 66.0
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 1.0e-119 434.1 272 80.5
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 7.9e-117 424.5 308 71.4
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.0e-116 424.1 313 70.6
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 1.1e-115 420.6 272 77.6
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 7.4e-115 417.9 308 69.5
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 1.7e-111 406.8 343 63.6
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 3.8e-111 405.6 295 72.5
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 5.0e-111 405.2 345 63.8
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 1.1e-110 404.1 345 64.1
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.2e-106 389.8 345 61.4
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.1e-105 387.5 345 61.2
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 1.8e-105 386.7 397 55.2
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 3.8e-103 379.0 327 64.5
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 2.1e-101 373.2 418 51.4
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 8.0e-101 371.3 292 66.4
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 5.9e-96 355.1 222 78.4
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 1.5e-94 350.5 222 79.7
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 8.0e-93 344.7 343 56.0
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 5.2e-92 342.0 384 51.8
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 3.2e-86 322.8 250 67.6
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.8e-84 317.0 345 53.6
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 5.2e-84 315.5 204 78.4
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 2.8e-82 309.7 310 51.6
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.8e-79 299.3 406 47.8
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 4.0e-76 289.3 249 62.2
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 5.7e-75 285.4 343 49.3
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 1.1e-68 264.6 273 48.7
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 2.0e-67 260.4 249 56.2
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 2.0e-67 260.4 169 76.9
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 7.0e-65 251.9 200 65.5
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 9.5e-62 241.5 253 55.3
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 3.6e-53 213.0 238 55.0
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 1.2e-51 208.0 144 74.3
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 1.2e-51 208.0 351 38.7
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 2.0e-51 207.2 144 68.8
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 1.1e-46 191.4 161 60.9
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 3.3e-46 189.9 165 62.4
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 2.6e-43 180.3 131 71.0
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 6.4e-42 175.6 110 80.9
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 3.9e-39 166.4 344 34.3
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 8.7e-39 165.2 323 34.1
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 7.3e-38 162.2 184 49.5
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 2.4e-36 157.1 316 31.3
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 5.1e-31 139.4 130 58.5
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 3.1e-28 130.2 113 61.1
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 9.3e-25 118.6 74 77.0
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 1.8e-20 104.4 73 69.9
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.2e-19 101.7 103 58.3
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.6e-19 100.5 95 54.7
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 3.9e-15 86.7 106 46.2


User provided reference genes

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