Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 4.5e-139 498.0 273 100.0
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 4.9e-45 185.7 277 45.1
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 2.3e-34 150.2 257 42.0
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 1.6e-32 144.1 274 39.4
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 4.8e-32 142.5 282 36.2
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 3.4e-30 136.3 257 38.9
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 1.7e-29 134.0 255 39.2
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 1.4e-28 131.0 248 35.1
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 7.1e-28 128.6 275 37.1
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 7.1e-28 128.6 277 36.5
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 1.2e-27 127.9 249 37.3
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 7.9e-27 125.2 280 36.8
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 7.9e-27 125.2 280 36.8
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.8e-26 124.0 287 35.2
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 8.7e-26 121.7 276 35.9
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 8.7e-26 121.7 275 34.9
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 2.5e-25 120.2 278 33.1
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 2.5e-25 120.2 274 35.0
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 9.6e-25 118.2 182 42.3
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 2.1e-24 117.1 274 32.8
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.8e-24 116.7 281 34.2
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 3.7e-24 116.3 230 34.8
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 1.1e-23 114.8 266 35.7
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.4e-23 114.4 257 35.8
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.4e-23 114.4 257 35.8
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 3.1e-23 113.2 279 31.2
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 4.0e-23 112.8 270 37.0
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 5.3e-23 112.5 278 33.1
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 5.3e-23 112.5 278 37.4
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 6.9e-23 112.1 252 33.7
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 1.2e-22 111.3 252 35.3
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.5e-22 110.9 271 33.9
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 2.0e-22 110.5 250 36.0
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 2.0e-22 110.5 278 33.5
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 2.0e-22 110.5 279 31.5
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 4.5e-22 109.4 228 34.6
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 4.5e-22 109.4 245 36.3
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 5.8e-22 109.0 147 40.8
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 5.8e-22 109.0 257 35.0
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 8.4e-21 105.1 277 32.1
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 1.1e-20 104.8 289 29.4
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 1.4e-20 104.4 274 30.7
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.9e-20 104.0 246 32.5
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.2e-20 103.2 271 28.4
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 5.5e-20 102.4 147 40.8
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 7.1e-20 102.1 245 29.8
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 9.3e-20 101.7 283 30.4
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 1.2e-19 101.3 244 34.0
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 1.2e-19 101.3 231 33.8
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.1e-19 100.5 229 31.4
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.5e-19 99.8 229 31.0
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 3.5e-19 99.8 263 31.2
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 4.6e-19 99.4 183 35.0
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 4.6e-19 99.4 232 34.1
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 6.0e-19 99.0 272 30.9
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.8e-18 97.4 272 33.5
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 1.8e-18 97.4 238 31.5
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 2.3e-18 97.1 258 29.5
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.3e-18 97.1 271 33.2
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 3.0e-18 96.7 278 29.9
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 3.9e-18 96.3 251 30.7
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 3.9e-18 96.3 265 33.2
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 6.7e-18 95.5 244 33.2
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 8.7e-18 95.1 249 32.5
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 8.7e-18 95.1 273 32.2
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 8.7e-18 95.1 116 48.3
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.1e-17 94.7 253 31.2
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 1.1e-17 94.7 274 29.9
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 1.1e-17 94.7 286 29.7
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.9e-17 94.0 134 42.5
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 3.3e-17 93.2 143 38.5
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 4.3e-17 92.8 272 30.9
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 5.7e-17 92.4 277 27.8
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 7.4e-17 92.0 276 31.2
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 1.6e-16 90.9 276 27.9
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 1.6e-16 90.9 244 32.4
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 2.1e-16 90.5 242 28.1
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.1e-16 90.5 267 31.8
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 2.8e-16 90.1 259 31.7
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 2.8e-16 90.1 246 30.9
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.8e-16 90.1 246 30.9
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 2.8e-16 90.1 247 34.4
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 2.8e-16 90.1 271 29.2
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 3.7e-16 89.7 182 31.9
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 4.8e-16 89.4 277 31.0
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.1e-15 88.2 260 32.3
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.1e-15 88.2 260 32.3
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 1.1e-15 88.2 140 37.1
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.4e-15 87.8 260 30.8
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 2.4e-15 87.0 273 28.9
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 3.1e-15 86.7 252 29.0
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 5.3e-15 85.9 279 31.5
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 5.3e-15 85.9 262 31.7
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 5.3e-15 85.9 262 32.1
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 6.9e-15 85.5 254 31.5
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 6.9e-15 85.5 122 42.6
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 9.0e-15 85.1 251 33.1
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 1.2e-14 84.7 256 30.9
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.2e-14 84.7 274 31.4
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 1.5e-14 84.3 225 29.8
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 5.8e-14 82.4 147 33.3
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 7.6e-14 82.0 266 35.0
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.3e-13 81.3 229 27.5
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 1.7e-13 80.9 242 29.8
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 1.7e-13 80.9 169 33.7
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 1.7e-13 80.9 135 40.0
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 2.9e-13 80.1 259 27.4
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 2.9e-13 80.1 267 28.5
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 6.5e-13 79.0 135 34.8
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 6.5e-13 79.0 298 29.2
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 8.4e-13 78.6 250 28.0
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.4e-12 77.8 135 38.5
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 1.9e-12 77.4 261 29.5
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 2.5e-12 77.0 276 27.5
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.2e-12 76.6 127 40.2
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 4.2e-12 76.3 232 29.7
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 4.2e-12 76.3 270 30.4
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 4.2e-12 76.3 106 42.5
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 5.5e-12 75.9 135 37.0
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 7.1e-12 75.5 224 28.1
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 9.3e-12 75.1 142 35.2
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.2e-11 74.7 118 35.6
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 1.6e-11 74.3 121 38.8
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 1.6e-11 74.3 139 35.3
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 2.1e-11 73.9 138 34.1
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 3.5e-11 73.2 282 29.4
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 3.5e-11 73.2 263 30.8
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 3.5e-11 73.2 142 33.1
Cpa.g.sc7.246 Carica papaya HOM05D003538 ORTHO05D004376 1.0e-10 71.6 264 27.3
Sopen07g015930 Solanum pennellii HOM05D003538 ORTHO05D004376 1.3e-10 71.2 280 26.8
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 1.1e-09 68.2 109 36.7
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 4.3e-09 66.2 233 27.0
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.6e-08 64.3 142 32.4
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.8e-08 63.5 261 28.4
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 2.8e-08 63.5 261 28.4
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 1.2e-06 58.2 270 25.9
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 1.2e-06 58.2 277 28.2
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 2.0e-06 57.4 246 26.4
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.0e-06 57.4 244 25.8
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 3.4e-06 56.6 248 25.0
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 3.4e-06 56.6 176 27.3
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 3.4e-06 56.6 136 32.4
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 5.9e-06 55.8 222 28.4
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 5.9e-06 55.8 131 31.3


User provided reference genes

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