Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0789G099 Amborella trichopoda HOM05D003352 ORTHO05D064140 7.4e-71 270.4 134 100.0
ATR0297G001 Amborella trichopoda HOM05D003352 ORTHO05D003874 4.0e-40 168.3 132 68.2
Lsat_1_v5_gn_6_114080 Lactuca sativa HOM05D003352 ORTHO05D003874 7.8e-20 100.9 132 40.9
Lj4A48T66 Lonicera japonica HOM05D003352 ORTHO05D003874 1.7e-19 99.8 132 41.7
ATR0705G191 Amborella trichopoda HOM05D003352 ORTHO05D003874 3.9e-19 98.6 132 41.7
Rhsim07G0233700 Rhododendron simsii HOM05D003352 ORTHO05D003874 6.6e-19 97.8 133 42.1
DCAR_020943 Daucus carota HOM05D003352 ORTHO05D003874 1.1e-18 97.1 132 40.2
Eucgr.F02396 Eucalyptus grandis HOM05D003352 ORTHO05D003874 2.5e-18 95.9 132 40.2
Haze_17587 Corylus avellana HOM05D003352 ORTHO05D003874 3.3e-18 95.5 139 41.0
SGA_v2.0_scaffold28G11770 Striga asiatica HOM05D003352 ORTHO05D003874 4.3e-18 95.1 132 38.6
DCAR_019485 Daucus carota HOM05D003352 ORTHO05D003874 5.6e-18 94.7 132 39.4
HanXRQChr13g0416911 Helianthus annuus HOM05D003352 ORTHO05D003874 9.5e-18 94.0 132 38.6
Lsat_1_v5_gn_4_123261 Lactuca sativa HOM05D003352 ORTHO05D003874 1.2e-17 93.6 132 40.9
Eucgr.F02398 Eucalyptus grandis HOM05D003352 ORTHO05D003874 1.6e-17 93.2 123 41.5
Actinidia29853 Actinidia chinensis HOM05D003352 ORTHO05D003874 2.1e-17 92.8 132 37.9
DCAR_019486 Daucus carota HOM05D003352 ORTHO05D003874 2.1e-17 92.8 132 39.4
Dinv39355 Davidia involucrata HOM05D003352 ORTHO05D003874 2.8e-17 92.4 132 39.4
FvH4_2g40650 Fragaria vesca HOM05D003352 ORTHO05D003874 2.8e-17 92.4 132 37.9
Hma1.2p1_0260F.1_g104540 Hydrangea macrophylla HOM05D003352 ORTHO05D003874 2.8e-17 92.4 132 38.6
ECA246G2720 Erigeron canadensis HOM05D003352 ORTHO05D003874 3.6e-17 92.0 132 38.6
FAN15G3076 Fragaria x ananassa HOM05D003352 ORTHO05D003874 3.6e-17 92.0 132 37.9
PGR031G3781 Punica granatum HOM05D003352 ORTHO05D003874 3.6e-17 92.0 132 40.2
RcHm_v2.0_Chr6g0300021 Rosa chinensis HOM05D003352 ORTHO05D003874 4.7e-17 91.7 132 37.9
TAR381G0743 Trochodendron aralioides HOM05D003352 ORTHO05D003874 4.7e-17 91.7 132 37.9
MD15G1034400 Malus domestica HOM05D003352 ORTHO05D003874 6.2e-17 91.3 132 37.1
FAN27G3412 Fragaria x ananassa HOM05D003352 ORTHO05D003874 8.1e-17 90.9 132 37.1
Atru.chr13.598 Acer truncatum HOM05D003352 ORTHO05D003874 1.1e-16 90.5 132 37.9
ClCG05G019490 Citrullus lanatus HOM05D003352 ORTHO05D003874 1.1e-16 90.5 132 36.4
Oeu028454.1 Olea europaea HOM05D003352 ORTHO05D003874 1.1e-16 90.5 132 39.4
Dinv36012 Davidia involucrata HOM05D003352 ORTHO05D003874 1.4e-16 90.1 132 37.9
HanXRQChr13g0416921 Helianthus annuus HOM05D003352 ORTHO05D003874 1.4e-16 90.1 132 37.1
Sed0020084 Sechium edule HOM05D003352 ORTHO05D003874 1.4e-16 90.1 132 37.1
CAN.G371.84 Capsicum annuum HOM05D003352 ORTHO05D003874 1.8e-16 89.7 127 40.2
MELO3C016719.2 Cucumis melo HOM05D003352 ORTHO05D003874 1.8e-16 89.7 132 37.1
MSTRG.22277 Avicennia marina HOM05D003352 ORTHO05D003874 2.3e-16 89.4 132 38.6
CSS0041517 Camellia sinensis var. sinensis HOM05D003352 ORTHO05D003874 2.3e-16 89.4 132 37.9
HanXRQChr09g0268801 Helianthus annuus HOM05D003352 ORTHO05D003874 2.3e-16 89.4 129 39.5
MD08G1040000 Malus domestica HOM05D003352 ORTHO05D003874 2.3e-16 89.4 132 37.1
Peaxi162Scf01514g00021 Petunia axillaris HOM05D003352 ORTHO05D003874 2.3e-16 89.4 127 39.4
PGSC0003DMG401011679 Solanum tuberosum HOM05D003352 ORTHO05D003874 2.3e-16 89.4 127 40.9
Ciclev10000902m.g Citrus clementina HOM05D003352 ORTHO05D003874 3.1e-16 89.0 132 37.1
Ciclev10001179m.g Citrus clementina HOM05D003352 ORTHO05D003874 3.1e-16 89.0 132 37.1
PSO675G7937 Papaver somniferum HOM05D003352 ORTHO05D003874 4.0e-16 88.6 132 37.9
Sed0002142 Sechium edule HOM05D003352 ORTHO05D003874 4.0e-16 88.6 127 37.0
TWI56G0292 Tripterygium wilfordii HOM05D003352 ORTHO05D003874 4.0e-16 88.6 127 39.4
Duzib093G0466 Durio zibethinus HOM05D003352 ORTHO05D003874 5.2e-16 88.2 132 38.6
Lsat_1_v5_gn_4_123301 Lactuca sativa HOM05D003352 ORTHO05D003874 5.2e-16 88.2 132 37.9
Solyc04g083160.2 Solanum lycopersicum HOM05D003352 ORTHO05D003874 5.2e-16 88.2 127 40.2
Sopen04g033160 Solanum pennellii HOM05D003352 ORTHO05D003874 5.2e-16 88.2 127 40.2
CiPaw.16G051300 Carya illinoinensis HOM05D003352 ORTHO05D003874 6.8e-16 87.8 132 37.1
Lalb_Chr24g0392801 Lupinus albus HOM05D003352 ORTHO05D003874 6.8e-16 87.8 132 39.4
Manes.05G169000 Manihot esculenta HOM05D003352 ORTHO05D003874 6.8e-16 87.8 132 37.1
Prupe.1G388500 Prunus persica HOM05D003352 ORTHO05D003874 6.8e-16 87.8 132 35.6
DCAR_019489 Daucus carota HOM05D003352 ORTHO05D003874 8.9e-16 87.4 132 37.9
Nitab4.5_0000068g0130 Nicotiana tabacum HOM05D003352 ORTHO05D003874 8.9e-16 87.4 127 38.6
MD08G1039800 Malus domestica HOM05D003352 ORTHO05D003874 1.2e-15 87.0 132 35.6
Hund26611 Selenicereus undatus HOM05D003352 ORTHO05D003874 1.2e-15 87.0 132 36.4
Thecc.08G016300 Theobroma cacao HOM05D003352 ORTHO05D003874 1.2e-15 87.0 132 37.9
CANSAT11G0813 Cannabis sativa HOM05D003352 ORTHO05D003874 1.5e-15 86.7 132 36.4
CsaV3_4G033930 Cucumis sativus L. HOM05D003352 ORTHO05D003874 1.5e-15 86.7 132 36.4
ECA232G2773 Erigeron canadensis HOM05D003352 ORTHO05D003874 1.5e-15 86.7 132 38.6
SalBow7G3683 Salvia bowleyana HOM05D003352 ORTHO05D003874 1.5e-15 86.7 132 35.6
Nitab4.5_0002280g0060 Nicotiana tabacum HOM05D003352 ORTHO05D003874 2.0e-15 86.3 127 37.8
PSO541G3721 Papaver somniferum HOM05D003352 ORTHO05D003874 2.0e-15 86.3 132 37.9
vmacro04475 Vaccinium macrocarpon HOM05D003352 ORTHO05D003874 2.0e-15 86.3 132 34.8
Aqoxy6G00921 Aquilegia oxysepala HOM05D003352 ORTHO05D003874 2.6e-15 85.9 132 37.1
DCAR_020942 Daucus carota HOM05D003352 ORTHO05D003874 2.6e-15 85.9 132 36.4
Medtr2g105360 Medicago truncatula HOM05D003352 ORTHO05D003874 2.6e-15 85.9 132 35.6
Os06g0570600 Oryza sativa ssp. japonica HOM05D003352 ORTHO05D003874 2.6e-15 85.9 132 37.1
CSS0008797 Camellia sinensis var. sinensis HOM05D003352 ORTHO05D003874 3.4e-15 85.5 131 35.9
Cfa018486 Carpinus fangiana HOM05D003352 ORTHO05D003874 4.4e-15 85.1 127 37.8
Potri.002G129700 Populus trichocarpa HOM05D003352 ORTHO05D003874 4.4e-15 85.1 132 36.4
SalBow4G0688 Salvia bowleyana HOM05D003352 ORTHO05D003874 4.4e-15 85.1 132 34.8
SalBow4G3256 Salvia bowleyana HOM05D003352 ORTHO05D003874 4.4e-15 85.1 132 34.8
SalBow6G3480 Salvia bowleyana HOM05D003352 ORTHO05D003874 4.4e-15 85.1 132 34.8
Zm00001eb385100 Zea mays HOM05D003352 ORTHO05D003874 4.4e-15 85.1 132 35.6
DCAR_020941 Daucus carota HOM05D001279 ORTHO05D003874 5.8e-15 84.7 132 36.4
SGA_v2.0_scaffold14G07023 Striga asiatica HOM05D003352 ORTHO05D003874 5.8e-15 84.7 127 37.8
Aa31LG11G4920 Aethionema arabicum HOM05D003352 ORTHO05D003874 7.6e-15 84.3 132 37.1
Hma1.2p1_0023F.1_g015330 Hydrangea macrophylla HOM05D003352 ORTHO05D003874 7.6e-15 84.3 132 35.6
Migut.C00648 Erythranthe guttata HOM05D003352 ORTHO05D003874 9.9e-15 84.0 132 36.4
Gohir.A06G015200 Gossypium hirsutum HOM05D003352 ORTHO05D003874 9.9e-15 84.0 132 37.9
Gohir.D06G013300 Gossypium hirsutum HOM05D003352 ORTHO05D003874 9.9e-15 84.0 132 37.9
Gorai.010G015900 Gossypium raimondii HOM05D003352 ORTHO05D003874 9.9e-15 84.0 132 37.9
MSTRG.1318 Avicennia marina HOM05D003352 ORTHO05D003874 1.3e-14 83.6 132 35.6
A06p36470 Brassica napus HOM05D003352 ORTHO05D003874 1.3e-14 83.6 132 37.1
C07p42020 Brassica napus HOM05D003352 ORTHO05D003874 1.3e-14 83.6 132 37.1
BraA06t26570Z Brassica rapa HOM05D003352 ORTHO05D003874 1.3e-14 83.6 132 37.1
CARHR187520 Cardamine hirsuta HOM05D003352 ORTHO05D003874 1.7e-14 83.2 132 37.1
Os06g0570100 Oryza sativa ssp. japonica HOM05D003352 ORTHO05D003874 1.7e-14 83.2 132 36.4
THA.LOC104806957 Tarenaya hassleriana HOM05D003352 ORTHO05D003874 1.7e-14 83.2 132 35.6
unitig_26.g9824 Utricularia gibba HOM05D003352 ORTHO05D003874 1.7e-14 83.2 133 37.6
Oeu020248.1 Olea europaea HOM05D003352 ORTHO05D003874 2.2e-14 82.8 132 35.6
BolC7t44733H Brassica oleracea HOM05D003352 ORTHO05D003874 2.9e-14 82.4 132 37.1
ECA232G1737 Erigeron canadensis HOM05D003352 ORTHO05D003874 2.9e-14 82.4 129 37.2
Psat5g308280 Pisum sativum HOM05D003352 ORTHO05D003874 2.9e-14 82.4 132 34.8
Carub.0006s2365 Capsella rubella HOM05D003352 ORTHO05D003874 3.7e-14 82.0 132 36.4
HanXRQChr09g0268311 Helianthus annuus HOM05D003352 ORTHO05D003874 3.7e-14 82.0 129 34.9
HanXRQChr09g0268821 Helianthus annuus HOM05D003352 ORTHO05D003874 3.7e-14 82.0 129 36.4
Lj3g0023986 Lotus japonicus HOM05D003352 ORTHO05D003874 3.7e-14 82.0 132 34.8
Nn5g29392 Nelumbo nucifera HOM05D003352 ORTHO05D003874 3.7e-14 82.0 132 35.6
TPR.G35981 Trifolium pratense HOM05D003352 ORTHO05D003874 3.7e-14 82.0 127 33.9
AT5G25900 Arabidopsis thaliana HOM05D003352 ORTHO05D003874 4.9e-14 81.6 132 36.4
Cpa.g.sc357.5 Carica papaya HOM05D003352 ORTHO05D003874 4.9e-14 81.6 132 34.1
SGA_v2.0_scaffold14G07022 Striga asiatica HOM05D003352 ORTHO05D003874 4.9e-14 81.6 132 34.8
THA.LOC104803409 Tarenaya hassleriana HOM05D003352 ORTHO05D003874 4.9e-14 81.6 132 35.6
COL.COLO4_26428 Corchorus olitorius HOM05D000546 ORTHO05D003874 6.4e-14 81.3 132 34.8
FAN15G1250 Fragaria x ananassa HOM05D003352 ORTHO05D003874 6.4e-14 81.3 132 34.1
HPP92_007661 Vanilla planifolia HOM05D003352 ORTHO05D003874 6.4e-14 81.3 126 37.3
arahy.Tifrunner.gnm1.ann1.TMG43S Arachis hypogaea HOM05D003352 ORTHO05D003874 8.4e-14 80.9 132 32.6
QL02p006420 Quercus lobata HOM05D003352 ORTHO05D003874 8.4e-14 80.9 132 36.4
SGA_v2.0_scaffold14G07017 Striga asiatica HOM05D003352 ORTHO05D003874 8.4e-14 80.9 131 33.6
EL10Ac3g06760 Beta vulgaris HOM05D003352 ORTHO05D003874 1.1e-13 80.5 132 34.8
Sabra02G0101700 Salix brachista HOM05D003352 ORTHO05D003874 1.1e-13 80.5 132 34.1
arahy.Tifrunner.gnm1.ann1.F136KG Arachis hypogaea HOM05D003352 ORTHO05D003874 1.4e-13 80.1 132 32.6
arahy.Tifrunner.gnm1.ann1.P3G561 Arachis hypogaea HOM05D003352 ORTHO05D003874 1.4e-13 80.1 132 32.6
arahy.Tifrunner.gnm1.ann1.XPY7J2 Arachis hypogaea HOM05D003352 ORTHO05D003874 1.4e-13 80.1 132 32.6
GSVIVG01009583001 Vitis vinifera HOM05D003352 ORTHO05D003874 1.4e-13 80.1 132 34.8
AL6G37830 Arabidopsis lyrata HOM05D003352 ORTHO05D003874 1.9e-13 79.7 132 35.6
FvH4_2g22670 Fragaria vesca HOM05D003352 ORTHO05D003874 1.9e-13 79.7 132 33.3
Lalb_Chr01g0011861 Lupinus albus HOM05D003352 ORTHO05D003874 1.9e-13 79.7 132 34.8
Lj3g0015404 Lotus japonicus HOM05D003352 ORTHO05D003874 2.4e-13 79.3 132 34.1
Lj3g0020783 Lotus japonicus HOM05D003352 ORTHO05D003874 2.4e-13 79.3 132 34.8
Glyma.13G371400 Glycine max HOM05D003352 ORTHO05D003874 3.2e-13 79.0 132 36.4
Os06g0569900 Oryza sativa ssp. japonica HOM05D003352 ORTHO05D003874 3.2e-13 79.0 132 35.6
QL02p006388 Quercus lobata HOM05D003352 ORTHO05D003874 3.2e-13 79.0 132 34.1
Sp2g21750 Schrenkiella parvula HOM05D003352 ORTHO05D003874 3.2e-13 79.0 132 34.8
Cpa.g.sc357.6 Carica papaya HOM05D003352 ORTHO05D003874 4.1e-13 78.6 132 34.8
Ah.13g075160 Amaranthus hybridus HOM05D003352 ORTHO05D003874 5.4e-13 78.2 132 34.1
Sc15g0006540 Simmondsia chinensis HOM05D003352 ORTHO05D003874 5.4e-13 78.2 132 34.8
AUR62035325 Chenopodium quinoa HOM05D003352 ORTHO05D003874 7.1e-13 77.8 132 34.1
AUR62035923 Chenopodium quinoa HOM05D003352 ORTHO05D003874 7.1e-13 77.8 132 34.1
Pp3c20_800 Physcomitrium patens HOM05D003352 ORTHO05D003874 9.2e-13 77.4 127 32.3
Pp3c20_830 Physcomitrium patens HOM05D003352 ORTHO05D003874 9.2e-13 77.4 127 32.3
Thhalv10004043m.g Eutrema salsugineum HOM05D003352 ORTHO05D003874 1.2e-12 77.0 132 34.8
Lj3g0017085 Lotus japonicus HOM05D003352 ORTHO05D003874 1.2e-12 77.0 132 34.1
vmacro04476 Vaccinium macrocarpon HOM05D003352 ORTHO05D003874 1.2e-12 77.0 127 33.1
vmacro04478 Vaccinium macrocarpon HOM05D003352 ORTHO05D003874 1.6e-12 76.6 127 31.5
Phvul.005G183600 Phaseolus vulgaris HOM05D003352 ORTHO05D003874 4.6e-12 75.1 132 32.6
SalBow6G4572 Salvia bowleyana HOM05D003352 ORTHO05D003874 4.6e-12 75.1 127 32.3
vmacro04477 Vaccinium macrocarpon HOM05D003352 ORTHO05D003874 4.6e-12 75.1 127 33.1
Ciclev10000884m.g Citrus clementina HOM05D003352 ORTHO05D003874 6.0e-12 74.7 132 34.1
Glyma.15G002200 Glycine max HOM05D003352 ORTHO05D003874 6.0e-12 74.7 132 34.1
Zm00001eb385070 Zea mays HOM05D003352 ORTHO05D003874 6.0e-12 74.7 132 31.8
Cc10_g03710 Coffea canephora HOM05D003352 ORTHO05D003874 7.8e-12 74.3 132 32.6
CDE07G0863 Ceratophyllum demersum HOM05D003352 ORTHO05D003874 1.0e-11 73.9 127 35.4
VMungo0647G2265 Vigna mungo HOM05D003352 ORTHO05D003874 1.0e-11 73.9 132 32.6
Cc00_g28260 Coffea canephora HOM05D003352 ORTHO05D003874 1.7e-11 73.2 132 32.6
HPP92_007630 Vanilla planifolia HOM05D003352 ORTHO05D003874 2.3e-11 72.8 132 33.3
CDE07G0336 Ceratophyllum demersum HOM05D003352 ORTHO05D003874 3.0e-11 72.4 127 34.6
Rhsim07G0233900 Rhododendron simsii HOM05D003352 ORTHO05D003874 3.0e-11 72.4 132 30.3
SMO239G0126 Selaginella moellendorffii HOM05D003352 ORTHO05D003874 3.0e-11 72.4 127 33.1
SEGI_37043 Sequoiadendron giganteum HOM05D003352 ORTHO05D003874 3.0e-11 72.4 133 30.1
SMO307G0003 Selaginella moellendorffii HOM05D003352 ORTHO05D003874 6.6e-11 71.2 127 33.1
AagrBONN_evm.TU.Sc2ySwM_362.1098 Anthoceros agrestis HOM05D003352 ORTHO05D003874 8.6e-11 70.9 127 30.7
Mapoly0130s0003 Marchantia polymorpha HOM05D003352 ORTHO05D003874 1.9e-10 69.7 131 29.8
Mapoly0140s0010 Marchantia polymorpha HOM05D003352 ORTHO05D003874 3.3e-10 68.9 127 31.5
Os06g0568600 Oryza sativa ssp. japonica HOM05D003352 ORTHO05D003874 5.6e-10 68.2 132 31.1
SMO367G0231 Selaginella moellendorffii HOM05D003352 ORTHO05D003874 7.3e-10 67.8 127 30.7
Os06g0569500 Oryza sativa ssp. japonica HOM05D003352 ORTHO05D003874 9.6e-10 67.4 132 32.6
MD15G1034700 Malus domestica HOM05D003352 ORTHO05D003874 4.7e-09 65.1 132 28.8
Hund26610 Selenicereus undatus HOM05D003352 ORTHO05D003874 1.4e-08 63.5 55 54.5
Ca_01007_v3 Cicer arietinum L. HOM05D003352 ORTHO05D003874 1.8e-08 63.2 132 27.3
Lj4A778G47 Lonicera japonica HOM05D003352 ORTHO05D003874 1.8e-08 63.2 53 58.5
SEGI_26040 Sequoiadendron giganteum HOM05D003352 ORTHO05D003874 8.9e-08 60.8 131 28.2
SEGI_06034 Sequoiadendron giganteum HOM05D003352 ORTHO05D003874 2.6e-07 59.3 131 29.8
SEGI_40109 Sequoiadendron giganteum HOM05D003352 ORTHO05D003874 2.6e-07 59.3 131 29.8
SEGI_25804 Sequoiadendron giganteum HOM05D003352 ORTHO05D003874 3.4e-07 58.9 131 29.8
SEGI_36411 Sequoiadendron giganteum HOM05D003352 ORTHO05D003874 3.4e-07 58.9 131 29.0
Cpa.g.sc357.4 Carica papaya HOM05D003352 ORTHO05D003874 9.9e-07 57.4 53 52.8
SEGI_01515 Sequoiadendron giganteum HOM05D003352 ORTHO05D385170 8.4e-06 54.3 119 29.4


User provided reference genes

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