Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 6.2e-143 510.8 255 100.0
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 4.4e-48 195.7 261 45.2
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 1.1e-46 191.0 251 43.0
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 4.6e-45 185.7 260 43.5
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 3.9e-44 182.6 261 45.2
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 6.6e-44 181.8 259 44.4
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 8.6e-44 181.4 254 44.9
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 7.3e-43 178.3 263 42.2
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 2.8e-42 176.4 253 44.7
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 2.8e-42 176.4 260 42.7
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 6.2e-42 175.3 253 41.9
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 6.2e-42 175.3 265 40.8
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 8.1e-42 174.9 257 45.5
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.1e-41 174.5 253 44.7
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 2.4e-41 173.3 263 43.3
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 2.4e-41 173.3 252 45.6
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 3.1e-41 172.9 255 42.7
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 3.1e-41 172.9 252 44.8
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 5.2e-41 172.2 251 44.6
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 5.2e-41 172.2 256 42.2
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 8.9e-41 171.4 271 41.0
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 1.5e-40 170.6 255 44.3
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 2.0e-40 170.2 252 43.3
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 2.0e-40 170.2 253 42.3
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 2.0e-40 170.2 251 41.4
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 2.6e-40 169.9 255 43.9
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.6e-40 169.9 253 43.1
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 3.4e-40 169.5 252 42.5
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 4.4e-40 169.1 228 47.4
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 5.8e-40 168.7 254 42.9
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 9.9e-40 167.9 266 41.0
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.7e-39 167.2 259 40.9
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 1.7e-39 167.2 262 42.7
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 1.7e-39 167.2 274 41.2
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 2.9e-39 166.4 247 41.3
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.9e-39 166.4 262 43.1
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.8e-39 166.0 247 39.3
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 3.8e-39 166.0 255 43.1
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 3.8e-39 166.0 250 42.8
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 4.9e-39 165.6 267 40.8
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 4.9e-39 165.6 256 42.6
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.4e-39 165.2 256 39.8
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.4e-39 165.2 256 39.8
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 8.4e-39 164.9 265 40.4
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 8.4e-39 164.9 250 43.6
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.4e-38 164.1 255 40.8
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 2.4e-38 163.3 260 44.6
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 3.2e-38 162.9 266 43.6
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 3.2e-38 162.9 265 40.4
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 3.2e-38 162.9 256 41.8
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 5.4e-38 162.2 249 40.2
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 5.4e-38 162.2 261 41.0
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 5.4e-38 162.2 252 43.3
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 5.4e-38 162.2 252 43.3
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 7.1e-38 161.8 274 40.5
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 7.1e-38 161.8 274 40.5
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 7.1e-38 161.8 247 38.5
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 9.3e-38 161.4 263 42.2
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 1.2e-37 161.0 169 51.5
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 1.6e-37 160.6 265 42.6
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 1.6e-37 160.6 167 53.3
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 2.1e-37 160.2 263 41.8
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 2.1e-37 160.2 254 40.9
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 2.1e-37 160.2 257 39.7
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.7e-37 159.8 279 41.2
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 3.5e-37 159.5 262 41.2
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 4.6e-37 159.1 266 39.5
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 4.6e-37 159.1 257 44.0
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 6.0e-37 158.7 261 41.8
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 6.0e-37 158.7 249 40.6
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 6.0e-37 158.7 257 44.0
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 6.0e-37 158.7 171 48.5
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 7.8e-37 158.3 254 39.8
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 7.8e-37 158.3 257 42.4
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 7.8e-37 158.3 244 44.7
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 1.0e-36 157.9 263 39.5
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.0e-36 157.9 262 41.2
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 1.3e-36 157.5 267 39.7
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.3e-36 157.5 271 39.9
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.3e-36 157.5 257 41.6
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.3e-36 157.5 252 40.9
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 2.3e-36 156.8 279 40.5
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 2.3e-36 156.8 249 42.6
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.0e-36 156.4 257 42.0
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 3.0e-36 156.4 260 41.5
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 5.1e-36 155.6 240 42.9
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 1.1e-35 154.5 254 40.2
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.1e-35 154.5 260 40.8
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 1.5e-35 154.1 257 40.9
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 2.5e-35 153.3 255 42.0
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 4.3e-35 152.5 261 41.4
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 4.3e-35 152.5 252 42.9
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 7.3e-35 151.8 260 40.4
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.3e-34 151.0 263 39.9
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 1.6e-34 150.6 259 39.4
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 1.6e-34 150.6 252 39.3
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.8e-34 149.8 180 45.6
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 2.8e-34 149.8 286 37.8
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 2.8e-34 149.8 262 38.9
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 2.8e-34 149.8 193 44.6
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 6.2e-34 148.7 263 37.6
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 1.1e-33 147.9 254 40.2
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 1.1e-33 147.9 239 39.7
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 1.4e-33 147.5 173 50.3
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 1.4e-33 147.5 276 37.7
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 1.4e-33 147.5 173 45.1
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 1.8e-33 147.1 250 40.4
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 3.1e-33 146.4 259 39.4
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 6.9e-33 145.2 181 43.6
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 9.0e-33 144.8 260 40.4
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 2.6e-32 143.3 267 37.8
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 1.3e-31 141.0 251 40.6
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 2.2e-31 140.2 266 39.1
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 2.9e-31 139.8 264 36.7
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 2.9e-31 139.8 314 33.4
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 3.8e-31 139.4 278 35.3
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 1.1e-30 137.9 275 34.2
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.2e-30 136.3 261 38.7
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 4.2e-30 136.0 168 44.0
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 5.4e-30 135.6 255 39.6
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 7.9e-29 131.7 286 36.0
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 7.9e-29 131.7 297 32.7
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.9e-27 127.1 366 30.3
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 1.3e-23 114.4 154 41.6
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 2.9e-23 113.2 145 44.1
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 4.9e-23 112.5 196 38.3
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 3.2e-22 109.8 224 33.9
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 5.4e-22 109.0 372 28.8
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 1.1e-19 101.3 137 45.3
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 2.5e-19 100.1 135 44.4
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 3.3e-19 99.8 126 42.9
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 1.1e-17 94.7 145 39.3
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 1.8e-17 94.0 219 30.6
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 6.9e-17 92.0 176 32.4
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 9.0e-17 91.7 130 42.3
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.2e-16 91.3 254 32.3
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 2.1e-13 80.5 154 37.0
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 4.6e-13 79.3 197 31.5
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 6.0e-13 79.0 52 69.2
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 7.9e-13 78.6 132 37.9
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 3.7e-10 69.7 123 40.7
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 6.9e-09 65.5 128 33.6
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 1.7e-07 60.8 48 58.3
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 2.9e-07 60.1 133 36.1
MCO09G383 Micromonas commoda HOM05D004579 ORTHO05D005376 1.1e-06 58.2 127 29.9


User provided reference genes

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