Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0789G068 Amborella trichopoda HOM05D005017 ORTHO05D006044 2.2e-132 475.7 252 100.0
MBI01_g27633_MAGBIO Magnolia biondii HOM05D005017 ORTHO05D006044 3.2e-99 365.5 255 78.0
Dinv30400 Davidia involucrata HOM05D005017 ORTHO05D006044 4.0e-94 348.6 245 74.3
CSS0030454 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.1e-91 340.5 241 74.3
Nn8g38928 Nelumbo nucifera HOM05D005017 ORTHO05D006044 4.2e-91 338.6 244 75.0
Potri.001G199500 Populus trichocarpa HOM05D005017 ORTHO05D006044 9.3e-91 337.4 252 70.2
Duzib235G0510 Durio zibethinus HOM05D005017 ORTHO05D006044 7.9e-90 334.3 244 71.7
Actinidia21740 Actinidia chinensis HOM05D005017 ORTHO05D006044 4.3e-88 328.6 238 72.7
Thecc.06G107700 Theobroma cacao HOM05D005017 ORTHO05D006044 4.3e-88 328.6 244 70.9
CiPaw.01G227300 Carya illinoinensis HOM05D005017 ORTHO05D006044 1.6e-87 326.6 243 70.0
ClCG09G000540 Citrullus lanatus HOM05D005017 ORTHO05D006044 1.6e-87 326.6 244 69.3
Gohir.D03G057100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.1e-87 326.2 244 70.1
Gorai.003G060200 Gossypium raimondii HOM05D005017 ORTHO05D006044 4.8e-87 325.1 244 69.7
Migut.I00995 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.4e-86 323.6 241 71.4
Gohir.A02G116100 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.8e-86 323.2 244 69.7
Rhsim08G0231100 Rhododendron simsii HOM05D005017 ORTHO05D006044 4.0e-86 322.0 254 69.3
COL.COLO4_30606 Corchorus olitorius HOM05D005017 ORTHO05D006044 5.3e-86 321.6 242 69.8
SGA_v2.0_scaffold71G23756 Striga asiatica HOM05D005017 ORTHO05D006044 9.0e-86 320.9 244 69.7
Atru.chr1.3634 Acer truncatum HOM05D005017 ORTHO05D006044 4.5e-85 318.5 241 70.1
Ciclev10026315m.g Citrus clementina HOM05D005017 ORTHO05D006044 4.5e-85 318.5 247 69.2
TAR624G0026 Trochodendron aralioides HOM05D005017 ORTHO05D006044 4.5e-85 318.5 244 69.3
HPP92_023230 Vanilla planifolia HOM05D005017 ORTHO05D006044 4.5e-85 318.5 243 71.2
MSTRG.22609 Avicennia marina HOM05D005017 ORTHO05D006044 7.6e-85 317.8 243 68.7
MELO3C024403.2 Cucumis melo HOM05D005017 ORTHO05D006044 1.3e-84 317.0 245 68.2
Dinv37934 Davidia involucrata HOM05D005017 ORTHO05D006044 3.8e-84 315.5 247 70.4
Manes.04G137400 Manihot esculenta HOM05D005017 ORTHO05D006044 8.4e-84 314.3 244 69.7
CsaV3_7G034910 Cucumis sativus L. HOM05D005017 ORTHO05D006044 1.1e-83 313.9 245 67.8
GSVIVG01016892001 Vitis vinifera HOM05D005017 ORTHO05D006044 1.1e-83 313.9 235 72.8
Sed0003007 Sechium edule HOM05D005017 ORTHO05D006044 1.9e-83 313.2 249 68.7
Glyma.07G012600 Glycine max HOM05D005017 ORTHO05D006044 5.5e-83 311.6 245 69.4
PGR102G3241 Punica granatum HOM05D005017 ORTHO05D006044 5.5e-83 311.6 244 69.3
VMungo0331G1330 Vigna mungo HOM05D005017 ORTHO05D006044 5.5e-83 311.6 245 69.8
Atru.chr1.3630 Acer truncatum HOM05D005017 ORTHO05D006044 9.3e-83 310.8 235 70.6
Aqoxy2G03852 Aquilegia oxysepala HOM05D005017 ORTHO05D006044 1.6e-82 310.1 242 70.7
Os01g0558300 Oryza sativa ssp. japonica HOM05D005017 ORTHO05D006044 2.1e-82 309.7 243 67.5
Cpa.g.sc663.1 Carica papaya HOM05D005017 ORTHO05D006044 4.6e-82 308.5 244 67.6
Phvul.010G142100 Phaseolus vulgaris HOM05D005017 ORTHO05D006044 6.0e-82 308.1 242 70.7
Lsat_1_v5_gn_1_36441 Lactuca sativa HOM05D005017 ORTHO05D006044 1.0e-81 307.4 249 66.3
Prupe.3G052700 Prunus persica HOM05D005017 ORTHO05D006044 1.0e-81 307.4 243 67.1
Psat4g194480 Pisum sativum HOM05D005017 ORTHO05D006044 2.3e-81 306.2 255 65.1
Nitab4.5_0006071g0010 Nicotiana tabacum HOM05D005017 ORTHO05D006044 3.9e-81 305.4 239 68.2
Sc12g0009900 Simmondsia chinensis HOM05D005017 ORTHO05D006044 6.7e-81 304.7 215 72.1
TWI79G0337 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 8.7e-81 304.3 241 68.0
CDE05G2485 Ceratophyllum demersum HOM05D005017 ORTHO05D006044 1.1e-80 303.9 239 69.9
CANSAT56G3588 Cannabis sativa HOM05D005017 ORTHO05D006044 1.5e-80 303.5 245 66.1
Zm00001eb162290 Zea mays HOM05D005017 ORTHO05D006044 1.9e-80 303.1 243 67.5
Nitab4.5_0004848g0030 Nicotiana tabacum HOM05D005017 ORTHO05D006044 2.5e-80 302.8 239 66.9
Potri.001G193700 Populus trichocarpa HOM05D005017 ORTHO05D006044 2.5e-80 302.8 252 64.7
MD17G1177100 Malus domestica HOM05D005017 ORTHO05D006044 4.3e-80 302.0 244 66.4
Ah.01g016970 Amaranthus hybridus HOM05D005017 ORTHO05D006044 5.7e-80 301.6 246 64.6
Cc04_g02270 Coffea canephora HOM05D005017 ORTHO05D006044 5.7e-80 301.6 234 68.4
HanXRQChr04g0095781 Helianthus annuus HOM05D005017 ORTHO05D006044 7.4e-80 301.2 241 66.0
RcHm_v2.0_Chr2g0142451 Rosa chinensis HOM05D005017 ORTHO05D006044 4.8e-79 298.5 206 71.4
Glyma.08G196300 Glycine max HOM05D005017 ORTHO05D006044 1.4e-78 297.0 245 67.3
MD09G1196300 Malus domestica HOM05D005017 ORTHO05D006044 1.4e-78 297.0 244 64.8
SEGI_04320 Sequoiadendron giganteum HOM05D005017 ORTHO05D006044 1.4e-78 297.0 252 65.9
Ca_23294_v3 Cicer arietinum L. HOM05D005017 ORTHO05D006044 1.8e-78 296.6 244 64.8
ECA247G1989 Erigeron canadensis HOM05D005017 ORTHO05D006044 1.8e-78 296.6 240 67.1
Hma1.2p1_0679F.1_g202280 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 2.4e-78 296.2 243 69.1
FAN14G3976 Fragaria x ananassa HOM05D005017 ORTHO05D006044 3.1e-78 295.8 244 65.6
TPR.G8766 Trifolium pratense HOM05D005017 ORTHO05D006044 1.2e-77 293.9 245 65.7
Lalb_Chr01g0013321 Lupinus albus HOM05D005017 ORTHO05D006044 3.4e-77 292.4 244 65.6
Lalb_Chr04g0263111 Lupinus albus HOM05D005017 ORTHO05D006044 4.5e-77 292.0 211 69.7
AUR62038338 Chenopodium quinoa HOM05D005017 ORTHO05D006044 5.9e-77 291.6 219 66.2
QL05p015800 Quercus lobata HOM05D005017 ORTHO05D006044 5.9e-77 291.6 344 51.5
EL10Ac9g21132 Beta vulgaris HOM05D005017 ORTHO05D006044 1.0e-76 290.8 242 65.3
CAN.G1668.3 Capsicum annuum HOM05D005017 ORTHO05D006044 1.0e-76 290.8 244 65.6
Lsat_1_v5_gn_5_133981 Lactuca sativa HOM05D005017 ORTHO05D006044 1.7e-76 290.0 240 66.7
Peaxi162Scf00038g01246 Petunia axillaris HOM05D005017 ORTHO05D006044 2.9e-76 289.3 202 70.8
PGSC0003DMG401002511 Solanum tuberosum HOM05D005017 ORTHO05D006044 2.9e-76 289.3 244 65.6
AUR62023908 Chenopodium quinoa HOM05D005017 ORTHO05D006044 3.8e-76 288.9 219 65.3
Medtr8g015590 Medicago truncatula HOM05D005017 ORTHO05D006044 1.1e-75 287.3 246 64.2
Sopen03g040120 Solanum pennellii HOM05D005017 ORTHO05D006044 1.9e-75 286.6 244 64.8
AL1G59670 Arabidopsis lyrata HOM05D005017 ORTHO05D006044 2.5e-75 286.2 253 63.2
FAN09G3568 Fragaria x ananassa HOM05D005017 ORTHO05D006044 2.5e-75 286.2 244 64.3
Eucgr.F03103 Eucalyptus grandis HOM05D005017 ORTHO05D006044 3.2e-75 285.8 213 68.5
Lj5C49T18 Lonicera japonica HOM05D005017 ORTHO05D006044 4.2e-75 285.4 193 74.1
Aa31LG10G3080 Aethionema arabicum HOM05D005017 ORTHO05D006044 5.5e-75 285.0 247 60.7
AT1G51730 Arabidopsis thaliana HOM05D005017 ORTHO05D006044 5.5e-75 285.0 252 63.1
FvH4_6g32940 Fragaria vesca HOM05D005017 ORTHO05D006044 1.6e-74 283.5 244 63.9
Lj3g0014772 Lotus japonicus HOM05D005017 ORTHO05D006044 2.1e-74 283.1 246 62.2
Thhalv10011475m.g Eutrema salsugineum HOM05D005017 ORTHO05D006044 6.1e-74 281.6 243 62.1
HanXRQChr12g0360701 Helianthus annuus HOM05D005017 ORTHO05D006044 6.1e-74 281.6 247 60.7
Sp1g38370 Schrenkiella parvula HOM05D005017 ORTHO05D006044 1.8e-73 280.0 243 61.3
Carub.0001s4060 Capsella rubella HOM05D005017 ORTHO05D006044 2.3e-73 279.6 238 62.2
Mapoly0076s0035 Marchantia polymorpha HOM05D005017 ORTHO05D006044 2.3e-73 279.6 249 60.6
C03p90280 Brassica napus HOM05D005017 ORTHO05D006044 1.5e-72 276.9 244 61.1
A08p02530 Brassica napus HOM05D005017 ORTHO05D006044 2.0e-72 276.6 244 61.1
TWI31G0253 Tripterygium wilfordii HOM05D005017 ORTHO05D006044 2.5e-72 276.2 244 64.8
THA.LOC104817935 Tarenaya hassleriana HOM05D005017 ORTHO05D006044 9.7e-72 274.2 243 59.7
Solyc03g121310.2 Solanum lycopersicum HOM05D005017 ORTHO05D006044 2.2e-71 273.1 250 62.4
BraA08t32293Z Brassica rapa HOM05D005017 ORTHO05D006044 3.7e-71 272.3 235 62.6
CARHR041890 Cardamine hirsuta HOM05D005017 ORTHO05D006044 1.4e-70 270.4 234 61.5
DCAR_026373 Daucus carota HOM05D005017 ORTHO05D006044 1.4e-70 270.4 261 59.0
A05p19400 Brassica napus HOM05D005017 ORTHO05D006044 5.3e-70 268.5 237 62.4
BolC6t36489H Brassica oleracea HOM05D005017 ORTHO05D006044 9.1e-70 267.7 238 62.2
Pp3c27_5930 Physcomitrium patens HOM05D005017 ORTHO05D006044 4.5e-69 265.4 225 60.0
PSO210G2569 Papaver somniferum HOM05D005017 ORTHO05D006044 2.2e-68 263.1 240 62.5
vmacro18822 Vaccinium macrocarpon HOM05D005017 ORTHO05D006044 2.9e-68 262.7 266 58.6
BolC3t21350H Brassica oleracea HOM05D005017 ORTHO05D006044 3.8e-68 262.3 244 60.2
Cfa003607 Carpinus fangiana HOM05D005017 ORTHO05D006044 5.0e-68 261.9 178 73.0
BcaC01g01293 Brassica carinata HOM05D005017 ORTHO05D006044 1.4e-67 260.4 262 56.5
BraA05t20844Z Brassica rapa HOM05D005017 ORTHO05D006044 3.2e-67 259.2 244 59.8
Ah.01g004460 Amaranthus hybridus HOM05D005017 ORTHO05D006044 5.5e-67 258.5 256 54.3
C06p13290 Brassica napus HOM05D005017 ORTHO05D006044 2.3e-65 253.1 244 59.0
BcaC08g43934 Brassica carinata HOM05D005017 ORTHO05D006044 3.9e-65 252.3 246 58.5
unitig_0.g2868 Utricularia gibba HOM05D005017 ORTHO05D006044 8.8e-65 251.1 242 59.1
FAN05G4929 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.5e-64 250.4 327 47.7
Pp3c5_13990 Physcomitrium patens HOM05D005017 ORTHO05D006044 7.4e-64 248.1 224 59.4
Haze_15918 Corylus avellana HOM05D005017 ORTHO05D006044 2.8e-63 246.1 178 69.7
arahy.Tifrunner.gnm1.ann1.TCAK26 Arachis hypogaea HOM05D005017 ORTHO05D006044 3.7e-63 245.7 246 58.5
arahy.Tifrunner.gnm1.ann1.ZK2LT4 Arachis hypogaea HOM05D005017 ORTHO05D006044 1.1e-62 244.2 246 58.1
Sabra01G0156200 Salix brachista HOM05D000200 ORTHO05D000262 1.1e-62 244.2 216 60.2
Gohir.A05G133633 Gossypium hirsutum HOM05D005017 ORTHO05D006044 1.5e-61 240.4 256 54.3
SalBow6G5092 Salvia bowleyana HOM05D005017 ORTHO05D006044 3.5e-61 239.2 242 54.5
SGA_v2.0_scaffold45G16987 Striga asiatica HOM05D005017 ORTHO05D006044 4.5e-61 238.8 235 60.9
Zm00001eb356680 Zea mays HOM05D005017 ORTHO05D006044 3.8e-60 235.7 243 58.0
ECA234G0069 Erigeron canadensis HOM05D005017 ORTHO05D006044 5.0e-60 235.3 242 55.4
Actinidia32130 Actinidia chinensis HOM05D005017 ORTHO05D006044 4.7e-58 228.8 243 56.0
CBR_g78883 Chara braunii HOM05D005017 ORTHO05D006044 1.5e-56 223.8 231 51.9
Lj9A517T55 Lonicera japonica HOM05D005017 ORTHO05D006044 5.7e-56 221.9 216 57.9
SMO300G0020 Selaginella moellendorffii HOM05D005017 ORTHO05D006044 7.0e-54 214.9 248 52.0
CSS0006284 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.0e-52 211.1 147 71.4
Gorai.009G139400 Gossypium raimondii HOM05D005017 ORTHO05D006044 6.3e-47 191.8 132 69.7
Oeu052817.1 Olea europaea HOM05D005017 ORTHO05D006044 1.4e-46 190.7 136 72.1
Gohir.D05G135550 Gossypium hirsutum HOM05D005017 ORTHO05D006044 2.5e-43 179.9 143 63.6
BcaB07g33629 Brassica carinata HOM05D005017 ORTHO05D006044 3.2e-43 179.5 163 63.2
PSO170G1437 Papaver somniferum HOM05D005017 ORTHO05D006044 8.8e-41 171.4 145 62.8
Duzib192G1032 Durio zibethinus HOM05D005017 ORTHO05D006044 1.3e-36 157.5 255 39.2
Hma1.2p1_0679F.1_g202290 Hydrangea macrophylla HOM05D005017 ORTHO05D006044 1.5e-35 154.1 137 63.5
BcaB02g11274 Brassica carinata HOM05D005017 ORTHO05D006044 4.0e-33 146.0 150 53.3
Cre03.g201776 Chlamydomonas reinhardtii HOM05D005017 ORTHO05D006044 2.0e-32 143.7 230 37.0
A06p02280 Brassica napus HOM05D005017 ORTHO05D006044 1.4e-30 137.5 191 49.2
MCO07G323 Micromonas commoda HOM05D005017 ORTHO05D006044 7.0e-30 135.2 230 37.4
PRCOL_00005001 Prasinoderma coloniale HOM05D005017 ORTHO05D006044 5.9e-29 132.1 249 36.1
FAN02G2875 Fragaria x ananassa HOM05D005017 ORTHO05D006044 1.6e-26 124.0 292 33.6
Oeu052818.1 Olea europaea HOM05D005017 ORTHO05D006044 1.3e-23 114.4 103 62.1
PSO782G0965 Papaver somniferum HOM05D005017 ORTHO05D006044 3.7e-23 112.8 92 62.0
Aa31csc1849G10 Aethionema arabicum HOM05D005017 ORTHO05D006044 1.1e-22 111.3 100 56.0
Oeu026734.1 Olea europaea HOM05D005017 ORTHO05D006044 4.1e-22 109.4 72 76.4
Aa31LG1G17240 Aethionema arabicum HOM05D005017 ORTHO05D006044 3.5e-21 106.3 58 81.0
PSO135G0227 Papaver somniferum HOM05D005017 ORTHO05D006044 1.2e-18 97.8 77 62.3
PSO675G1433 Papaver somniferum HOM05D005017 ORTHO05D006044 1.4e-17 94.4 77 61.0
CSS0004179 Camellia sinensis var. sinensis HOM05D005017 ORTHO05D006044 1.2e-13 81.3 70 68.6
Cfa022882 Carpinus fangiana HOM05D005017 ORTHO05D006044 1.8e-09 67.4 163 35.0
Pp3c6_13820 Physcomitrium patens HOM05D005017 ORTHO05D006044 6.8e-09 65.5 184 30.4
Migut.I01159 Erythranthe guttata HOM05D005017 ORTHO05D006044 1.9e-06 57.4 63 50.8
TAR383G0476 Trochodendron aralioides HOM05D005017 ORTHO05D006044 3.2e-06 56.6 34 64.7


User provided reference genes

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