Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0789G048 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1573.9 786 100.0
TAR626G1406 Trochodendron aralioides HOM05D004228 ORTHO05D005137 0.0e+00 1209.9 783 76.5
Aqoxy7G02340 Aquilegia oxysepala HOM05D004228 ORTHO05D005137 0.0e+00 1182.2 780 74.0
Nn8g40122 Nelumbo nucifera HOM05D004228 ORTHO05D005137 0.0e+00 1168.3 757 74.9
Prupe.3G104700 Prunus persica HOM05D004228 ORTHO05D005137 0.0e+00 1166.4 782 73.4
GSVIVG01016092001 Vitis vinifera HOM05D004228 ORTHO05D005137 0.0e+00 1165.2 785 73.2
FvH4_6g28160 Fragaria vesca HOM05D004228 ORTHO05D005137 0.0e+00 1158.3 781 73.1
CSS0026873 Camellia sinensis var. sinensis HOM05D004228 ORTHO05D005137 0.0e+00 1152.9 782 72.3
PSO170G5168 Papaver somniferum HOM05D004228 ORTHO05D005137 0.0e+00 1152.9 779 73.2
RcHm_v2.0_Chr2g0132121 Rosa chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1151.3 776 73.1
Dinv21435 Davidia involucrata HOM05D004228 ORTHO05D005137 0.0e+00 1149.8 784 73.0
Actinidia25487 Actinidia chinensis HOM05D004228 ORTHO05D005137 0.0e+00 1145.2 778 72.1
FAN14G1073 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1139.4 818 69.7
FAN09G0969 Fragaria x ananassa HOM05D004228 ORTHO05D005137 0.0e+00 1136.3 758 73.6
Ciclev10024933m.g Citrus clementina HOM05D004228 ORTHO05D005137 0.0e+00 1135.6 784 71.8
Glyma.13G072500 Glycine max HOM05D004228 ORTHO05D005137 0.0e+00 1132.9 777 71.2
MSTRG.13911 Avicennia marina HOM05D004228 ORTHO05D005137 0.0e+00 1131.3 776 71.5
CiPaw.02G164000 Carya illinoinensis HOM05D004228 ORTHO05D005137 0.0e+00 1129.8 777 71.4
Thecc.06G048200 Theobroma cacao HOM05D004228 ORTHO05D005137 0.0e+00 1129.4 779 71.2
Migut.E01375 Erythranthe guttata HOM05D004228 ORTHO05D005137 0.0e+00 1127.1 790 70.6
Rhsim08G0202500 Rhododendron simsii HOM05D004228 ORTHO05D005137 0.0e+00 1127.1 817 68.3
Lj6g0018144 Lotus japonicus HOM05D004228 ORTHO05D005137 0.0e+00 1126.7 777 71.3
Ca_13679_v3 Cicer arietinum L. HOM05D004228 ORTHO05D005137 0.0e+00 1125.5 776 70.6
Potri.003G185600 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1125.2 773 71.9
Sopen08g024020 Solanum pennellii HOM05D004228 ORTHO05D005137 0.0e+00 1123.2 777 70.7
Potri.003G185951 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1122.1 773 71.5
Potri.003G185776 Populus trichocarpa HOM05D004228 ORTHO05D005137 0.0e+00 1121.3 773 71.7
Solyc08g075390.4 Solanum lycopersicum HOM05D004228 ORTHO05D005137 0.0e+00 1120.1 777 70.7
CAN.G930.1 Capsicum annuum HOM05D004228 ORTHO05D005137 0.0e+00 1117.8 781 70.0
Duzib160G0712 Durio zibethinus HOM05D004228 ORTHO05D005137 0.0e+00 1117.8 778 71.0
Cc08_g05800 Coffea canephora HOM05D004228 ORTHO05D005137 0.0e+00 1117.1 777 70.4
Atru.chr1.2817 Acer truncatum HOM05D004228 ORTHO05D005137 0.0e+00 1114.8 759 73.6
CANSAT64G2586 Cannabis sativa HOM05D004228 ORTHO05D005137 0.0e+00 1114.4 791 69.7
Lalb_Chr18g0048351 Lupinus albus HOM05D004228 ORTHO05D005137 0.0e+00 1113.6 776 70.1
THA.LOC104813593 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 0.0e+00 1112.8 783 69.7
HPP92_017167 Vanilla planifolia HOM05D004228 ORTHO05D005137 0.0e+00 1110.5 775 69.2
Ah.09g231750 Amaranthus hybridus HOM05D004228 ORTHO05D005137 0.0e+00 1109.4 783 70.6
Os02g0793300 Oryza sativa ssp. japonica HOM05D004228 ORTHO05D005137 0.0e+00 1109.0 776 70.6
Psat4g022640 Pisum sativum HOM05D004228 ORTHO05D005137 0.0e+00 1109.0 778 69.0
HanXRQChr13g0411161 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1108.2 783 70.6
Thhalv10018131m.g Eutrema salsugineum HOM05D004228 ORTHO05D005137 0.0e+00 1107.0 774 69.8
EL10Ac8g19421 Beta vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1106.7 778 71.1
TWI12G1267 Tripterygium wilfordii HOM05D004228 ORTHO05D005137 0.0e+00 1105.9 783 70.4
Zm00001eb192570 Zea mays HOM05D004228 ORTHO05D005137 0.0e+00 1105.9 773 70.2
Phvul.006G018900 Phaseolus vulgaris HOM05D004228 ORTHO05D005137 0.0e+00 1104.4 774 69.6
arahy.Tifrunner.gnm1.ann1.1BZV33 Arachis hypogaea HOM05D004228 ORTHO05D005137 0.0e+00 1102.8 770 70.8
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 0.0e+00 1102.0 775 69.5
Sp5g34750 Schrenkiella parvula HOM05D004228 ORTHO05D005137 0.0e+00 1100.9 774 69.4
A07p26990 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1100.1 779 69.2
BcaNung04171 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1098.2 774 68.9
BraA07t30343Z Brassica rapa HOM05D004228 ORTHO05D005137 0.0e+00 1097.8 779 69.1
Sed0017026 Sechium edule HOM05D004228 ORTHO05D005137 0.0e+00 1097.8 784 70.0
C06p29710 Brassica napus HOM05D004228 ORTHO05D005137 0.0e+00 1095.9 776 69.2
BolC6t38132H Brassica oleracea HOM05D004228 ORTHO05D005137 0.0e+00 1095.9 776 68.9
DCAR_030908 Daucus carota HOM05D004228 ORTHO05D005137 0.0e+00 1095.9 777 68.6
CARHR073460 Cardamine hirsuta HOM05D004228 ORTHO05D005137 0.0e+00 1094.0 776 68.3
Carub.0002s2655 Capsella rubella HOM05D004228 ORTHO05D005137 0.0e+00 1093.6 775 69.3
AT1G79690 Arabidopsis thaliana HOM05D004228 ORTHO05D005137 0.0e+00 1092.8 774 68.6
AL2G40390 Arabidopsis lyrata HOM05D004228 ORTHO05D005137 0.0e+00 1092.4 777 68.6
Lsat_1_v5_gn_3_53241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1092.0 786 70.0
Gohir.A10G000600 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1090.9 777 69.4
Gorai.011G001100 Gossypium raimondii HOM05D004228 ORTHO05D005137 0.0e+00 1090.5 778 69.3
ATR0580G052 Amborella trichopoda HOM05D004228 ORTHO05D005137 0.0e+00 1089.7 750 71.5
VMungo0540G0565 Vigna mungo HOM05D004228 ORTHO05D005137 0.0e+00 1089.7 774 68.3
Gohir.D10G000700 Gossypium hirsutum HOM05D004228 ORTHO05D005137 0.0e+00 1088.6 777 69.0
BcaB02g07234 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1087.4 777 68.1
HanXRQChr17g0558091 Helianthus annuus HOM05D004228 ORTHO05D005137 0.0e+00 1082.0 777 69.0
BcaC08g47528 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1081.2 774 68.5
BcaB02g08706 Brassica carinata HOM05D004228 ORTHO05D005137 0.0e+00 1078.9 777 68.1
MELO3C023478.2 Cucumis melo HOM05D004228 ORTHO05D005137 0.0e+00 1078.9 784 68.5
Sabra03G0135800 Salix brachista HOM05D004228 ORTHO05D005137 0.0e+00 1078.9 782 69.3
Lsat_1_v5_gn_6_17241 Lactuca sativa HOM05D004228 ORTHO05D005137 0.0e+00 1076.2 780 68.8
AUR62002649 Chenopodium quinoa HOM05D004228 ORTHO05D005137 5.4e-312 1074.3 790 68.5
C06p53520 Brassica napus HOM05D004228 ORTHO05D005137 5.4e-312 1073.9 784 67.1
CsaV3_7G031770 Cucumis sativus L. HOM05D004228 ORTHO05D005137 1.1e-311 1072.8 767 69.9
Aa31LG4G1300 Aethionema arabicum HOM05D004228 ORTHO05D005137 1.1e-310 1069.7 774 67.7
Haze_16698 Corylus avellana HOM05D004228 ORTHO05D005137 1.1e-310 1069.7 887 62.5
MELO3C023479.2 Cucumis melo HOM05D004228 ORTHO05D005137 5.9e-309 1063.9 769 69.2
CsaV3_7G031780 Cucumis sativus L. HOM05D004228 ORTHO05D005137 7.7e-309 1063.5 785 67.8
BolC6t40368H Brassica oleracea HOM05D004228 ORTHO05D005137 1.8e-305 1052.4 784 65.9
ECA240G4106 Erigeron canadensis HOM05D004228 ORTHO05D005137 2.0e-304 1048.9 772 67.9
ClCG09G003440 Citrullus lanatus HOM05D004228 ORTHO05D005137 3.3e-304 1048.1 760 68.7
BraA07t31978Z Brassica rapa HOM05D004228 ORTHO05D005137 4.4e-304 1047.7 782 66.0
DCAR_002193 Daucus carota HOM05D004228 ORTHO05D005137 1.3e-303 1046.2 777 66.5
ECA240G2553 Erigeron canadensis HOM05D004228 ORTHO05D005137 1.7e-303 1045.8 774 66.9
A07p44700 Brassica napus HOM05D004228 ORTHO05D005137 1.7e-300 1035.8 787 65.3
Actinidia18265 Actinidia chinensis HOM05D004228 ORTHO05D005137 5.5e-291 1004.2 683 71.7
Medtr3g437740 Medicago truncatula HOM05D004228 ORTHO05D005137 2.1e-290 1002.3 702 69.7
THA.LOC104808168 Tarenaya hassleriana HOM05D004228 ORTHO05D005137 3.0e-289 998.4 783 63.9
SMO337G0028 Selaginella moellendorffii HOM05D004228 ORTHO05D005137 2.0e-288 995.7 773 63.3
MELO3C023481.2 Cucumis melo HOM05D004228 ORTHO05D005137 1.4e-286 989.6 756 65.2
SGA_v2.0_scaffold121G33058 Striga asiatica HOM05D004228 ORTHO05D005137 2.4e-286 988.8 719 68.3
unitig_37.g12907 Utricularia gibba HOM05D004228 ORTHO05D005137 3.8e-284 981.5 776 63.7
VMungo1080G1878 Vigna mungo HOM05D004228 ORTHO05D005137 1.9e-283 979.2 745 65.9
Mapoly0059s0059 Marchantia polymorpha HOM05D004228 ORTHO05D005137 3.2e-283 978.4 767 63.8
Peaxi162Scf00193g00726 Petunia axillaris HOM05D004228 ORTHO05D005137 1.0e-281 973.4 740 66.5
Pp3c5_190 Physcomitrium patens HOM05D004228 ORTHO05D005137 2.3e-281 972.2 783 62.5
vmacro19079 Vaccinium macrocarpon HOM05D004228 ORTHO05D005137 4.4e-280 968.0 761 65.2
Eucgr.J03134 Eucalyptus grandis HOM05D004228 ORTHO05D005137 3.5e-277 958.4 668 71.4
FAN02G0630 Fragaria x ananassa HOM05D004228 ORTHO05D005137 1.0e-276 956.8 696 68.7
MD17G1227300 Malus domestica HOM05D004228 ORTHO05D005137 4.4e-272 941.4 777 63.4
arahy.Tifrunner.gnm1.ann1.GHRN5T Arachis hypogaea HOM05D004228 ORTHO05D005137 7.3e-267 924.1 755 62.8
arahy.Tifrunner.gnm1.ann1.XEX8KQ Arachis hypogaea HOM05D004228 ORTHO05D005137 4.9e-255 884.8 752 60.8
AagrBONN_evm.TU.Sc2ySwM_117.2286 Anthoceros agrestis HOM05D004228 ORTHO05D005137 4.1e-254 881.7 705 62.6
Nitab4.5_0000030g0500 Nicotiana tabacum HOM05D004228 ORTHO05D005137 2.7e-245 852.4 665 64.7
Nitab4.5_0002244g0120 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.3e-244 850.1 639 67.1
Lsat_1_v5_gn_0_21260 Lactuca sativa HOM05D004228 ORTHO05D005137 2.1e-229 799.7 668 62.3
Manes.11G069700 Manihot esculenta HOM05D004228 ORTHO05D005137 1.2e-224 783.9 544 71.5
Lsat_1_v5_gn_0_21180 Lactuca sativa HOM05D004228 ORTHO05D005137 2.0e-224 783.1 649 61.5
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.6e-218 763.5 564 66.7
AUR62034058 Chenopodium quinoa HOM05D004228 ORTHO05D005137 2.1e-210 736.5 766 53.4
Hma1.2p1_0338F.1_g129690 Hydrangea macrophylla HOM05D004228 ORTHO05D005137 7.6e-208 728.0 521 68.3
Oeu057157.1 Olea europaea HOM05D004228 ORTHO05D005137 2.9e-183 646.4 451 70.5
arahy.Tifrunner.gnm1.ann1.W5V7W0 Arachis hypogaea HOM05D004228 ORTHO05D005137 1.6e-168 597.4 449 65.7
PSO017G5477 Papaver somniferum HOM05D004228 ORTHO05D005137 1.0e-151 541.6 374 73.0
MBI14_g16439_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 3.0e-143 513.5 607 48.3
PSO017G2203 Papaver somniferum HOM05D004228 ORTHO05D005137 9.5e-142 508.4 349 69.6
SEGI_32687 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 3.8e-122 443.4 347 63.1
COL.COLO4_26790 Corchorus olitorius HOM05D004228 ORTHO05D005137 2.2e-114 417.5 273 74.7
Lsat_1_v5_gn_3_49001 Lactuca sativa HOM05D004228 ORTHO05D005137 8.2e-93 345.9 248 67.3
Cpa.g.sc167.19 Carica papaya HOM05D004228 ORTHO05D005137 1.9e-89 334.7 252 65.1
MBI14_g16438_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 1.4e-81 308.5 186 78.5
MD09G1228800 Malus domestica HOM05D004228 ORTHO05D005137 3.1e-68 264.2 266 53.4
RcHm_v2.0_Chr2g0132171 Rosa chinensis HOM05D004228 ORTHO05D005137 9.1e-68 262.7 260 56.9
COL.COLO4_26791 Corchorus olitorius HOM05D004228 ORTHO05D005137 4.5e-67 260.4 362 42.8
MD00G1188200 Malus domestica HOM05D004228 ORTHO05D005137 1.4e-63 248.8 252 53.2
Gorai.007G245800 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.3e-61 240.0 158 72.2
CBR_g49119 Chara braunii HOM05D004228 ORTHO05D005137 4.1e-60 237.3 221 52.5
Gorai.008G198300 Gossypium raimondii HOM05D004228 ORTHO05D005137 8.5e-58 229.6 140 76.4
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 1.9e-57 228.4 212 58.5
Gohir.D12G184901 Gossypium hirsutum HOM05D004228 ORTHO05D005137 3.4e-54 217.6 140 73.6
CBR_g49132 Chara braunii HOM05D004228 ORTHO05D005137 5.2e-47 193.7 148 63.5
Glyma.20G046501 Glycine max HOM05D004228 ORTHO05D005137 1.4e-44 185.7 150 61.3
CBR_g49120 Chara braunii HOM05D000019 ORTHO05D000002 6.6e-42 176.8 209 45.9
Nitab4.5_0002244g0110 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.9e-41 175.3 110 76.4
Gorai.006G048700 Gossypium raimondii HOM05D004228 ORTHO05D005137 7.3e-41 173.3 108 74.1
Nitab4.5_0000030g0490 Nicotiana tabacum HOM05D004228 ORTHO05D005137 1.2e-40 172.6 107 77.6
SEGI_17966 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.8e-40 171.4 117 72.6
Cfa001845 Carpinus fangiana HOM05D004228 ORTHO05D005137 6.1e-40 170.2 118 73.7
Oeu057158.1 Olea europaea HOM05D004228 ORTHO05D005137 6.1e-40 170.2 112 74.1
SEGI_04747 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 2.3e-39 168.3 108 70.4
SEGI_21553 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 4.4e-38 164.1 101 75.2
FAN02G0140 Fragaria x ananassa HOM05D004228 ORTHO05D005137 4.1e-36 157.5 88 81.8
MD09G1229100 Malus domestica HOM05D004228 ORTHO05D005137 5.6e-33 147.1 83 78.3
CBR_g49131 Chara braunii HOM05D007088 ORTHO05D008477 1.8e-31 142.1 95 67.4
Glyma.20G046401 Glycine max HOM05D004228 ORTHO05D005137 3.1e-31 141.4 92 75.0
CDE02G2004 Ceratophyllum demersum HOM05D004228 ORTHO05D005137 9.8e-30 136.3 104 67.3
Gorai.002G214900 Gossypium raimondii HOM05D004228 ORTHO05D005137 3.2e-28 131.3 82 74.4
Gohir.A06G076350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.2e-27 129.4 92 68.5
Gohir.D02G099801 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.2e-27 129.4 92 68.5
Gohir.A07G034550 Gossypium hirsutum HOM05D004228 ORTHO05D005137 2.7e-27 128.3 92 67.4
Gohir.A05G304350 Gossypium hirsutum HOM05D004228 ORTHO05D005137 4.6e-27 127.5 86 70.9
Gohir.D13G121066 Gossypium hirsutum HOM05D004228 ORTHO05D005137 6.6e-26 123.6 82 69.5
SEGI_15998 Sequoiadendron giganteum HOM05D004228 ORTHO05D005137 1.1e-23 116.3 87 60.9
MD00G1188000 Malus domestica HOM05D004228 ORTHO05D005137 6.8e-23 113.6 70 72.9
Gohir.D09G001001 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.2e-19 102.8 222 33.3
Gorai.009G406300 Gossypium raimondii HOM05D004228 ORTHO05D005137 6.0e-19 100.5 222 33.3
MCO12G087 Micromonas commoda HOM05D004228 ORTHO05D005137 1.7e-18 99.0 153 39.2
Lsat_1_v5_gn_5_149700 Lactuca sativa HOM05D004228 ORTHO05D016156 1.4e-15 89.4 86 55.8
Actinidia00024 Actinidia chinensis HOM05D000639 ORTHO05D019441 4.1e-12 77.8 77 51.9
Cre08.g381800 Chlamydomonas reinhardtii HOM05D004228 ORTHO05D005137 7.1e-12 77.0 171 35.1
MBI14_g16442_MAGBIO Magnolia biondii HOM05D004228 ORTHO05D005137 6.0e-11 73.9 45 75.6
Pp3c5_70 Physcomitrium patens HOM05D004228 ORTHO05D005137 8.6e-10 70.1 44 68.2
Gohir.A11G044150 Gossypium hirsutum HOM05D004228 ORTHO05D005137 1.2e-08 66.2 54 61.1
Lsat_1_v5_gn_4_114980 Lactuca sativa HOM05D004228 ORTHO05D005137 8.1e-08 63.5 56 58.9
Cpa.g.sc167.21 Carica papaya HOM05D004228 ORTHO05D043558 8.9e-07 60.1 37 64.9
BraA06t24594Z Brassica rapa HOM05D004228 ORTHO05D005137 9.9e-06 56.6 41 65.9


User provided reference genes

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