Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0787G185 Amborella trichopoda HOM05D005102 ORTHO05D006090 5.9e-147 524.2 278 100.0
CDE09G0962 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 1.1e-97 360.5 252 73.8
Nn3g19843 Nelumbo nucifera HOM05D005102 ORTHO05D006090 4.5e-94 348.6 262 71.4
CDE02G3615 Ceratophyllum demersum HOM05D005102 ORTHO05D006090 2.9e-93 345.9 252 71.8
Manes.03G102500 Manihot esculenta HOM05D005102 ORTHO05D006090 7.1e-92 341.3 265 70.2
Dinv27121 Davidia involucrata HOM05D005102 ORTHO05D006090 2.1e-91 339.7 252 72.6
Os02g0658900 Oryza sativa ssp. japonica HOM05D005102 ORTHO05D006090 8.7e-90 334.3 253 70.0
TAR365G0288 Trochodendron aralioides HOM05D005102 ORTHO05D006090 8.7e-90 334.3 262 68.7
HPP92_021768 Vanilla planifolia HOM05D005102 ORTHO05D006090 8.7e-90 334.3 253 69.2
Aqoxy5G00133 Aquilegia oxysepala HOM05D005102 ORTHO05D006090 1.5e-89 333.6 266 70.7
Zm00001eb238020 Zea mays HOM05D005102 ORTHO05D006090 2.5e-89 332.8 253 69.6
Ciclev10005541m.g Citrus clementina HOM05D005102 ORTHO05D006090 5.6e-89 331.6 264 68.9
Psat1g170520 Pisum sativum HOM05D005102 ORTHO05D006090 2.1e-88 329.7 264 68.6
TWI09G0526 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 2.1e-88 329.7 248 71.0
Phvul.006G133300 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 3.7e-88 328.9 263 68.4
Glyma.15G125200 Glycine max HOM05D005102 ORTHO05D006090 4.8e-88 328.6 263 68.1
Actinidia37761 Actinidia chinensis HOM05D005102 ORTHO05D006090 6.2e-88 328.2 270 67.0
Lj6g0009036 Lotus japonicus HOM05D005102 ORTHO05D006090 8.1e-88 327.8 263 68.1
Lj3g0001784 Lotus japonicus HOM05D005102 ORTHO05D006090 1.1e-87 327.4 263 67.7
Ca_11361_v3 Cicer arietinum L. HOM05D005102 ORTHO05D006090 1.4e-87 327.0 254 69.3
Glyma.09G019100 Glycine max HOM05D005102 ORTHO05D006090 1.8e-87 326.6 263 68.4
Cfa014795 Carpinus fangiana HOM05D005102 ORTHO05D006090 2.4e-87 326.2 253 69.2
COL.COLO4_15983 Corchorus olitorius HOM05D005102 ORTHO05D006090 3.1e-87 325.9 252 69.8
TPR.G17506 Trifolium pratense HOM05D005102 ORTHO05D006090 9.0e-87 324.3 254 68.9
Eucgr.K00416 Eucalyptus grandis HOM05D005102 ORTHO05D006090 2.6e-86 322.8 251 69.3
Nitab4.5_0001041g0140 Nicotiana tabacum HOM05D005102 ORTHO05D006090 2.6e-86 322.8 253 70.4
VMungo0540G0767 Vigna mungo HOM05D005102 ORTHO05D006090 5.8e-86 321.6 263 67.3
Thecc.04G266700 Theobroma cacao HOM05D005102 ORTHO05D006090 9.9e-86 320.9 252 69.0
Haze_11479 Corylus avellana HOM05D005102 ORTHO05D006090 1.7e-85 320.1 268 65.3
Psat7g046400 Pisum sativum HOM05D005102 ORTHO05D006090 2.9e-85 319.3 264 67.4
FAN13G1436 Fragaria x ananassa HOM05D005102 ORTHO05D006090 3.8e-85 318.9 263 65.8
PSO832G1873 Papaver somniferum HOM05D005102 ORTHO05D006090 3.8e-85 318.9 253 69.2
QL08p018871 Quercus lobata HOM05D005102 ORTHO05D006090 3.8e-85 318.9 254 67.7
CiPaw.01G176900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.4e-84 317.0 269 65.1
FAN08G3625 Fragaria x ananassa HOM05D005102 ORTHO05D006090 1.4e-84 317.0 263 65.4
Gohir.A02G043600 Gossypium hirsutum HOM05D005102 ORTHO05D006090 1.9e-84 316.6 252 68.3
Gorai.005G054400 Gossypium raimondii HOM05D005102 ORTHO05D006090 1.9e-84 316.6 252 68.3
QL06p021548 Quercus lobata HOM05D005102 ORTHO05D006090 1.9e-84 316.6 253 67.6
PSO302G0040 Papaver somniferum HOM05D005102 ORTHO05D006090 3.2e-84 315.8 253 68.8
Duzib052G0859 Durio zibethinus HOM05D005102 ORTHO05D006090 4.2e-84 315.5 252 67.1
FAN04G2658 Fragaria x ananassa HOM05D005102 ORTHO05D006090 4.2e-84 315.5 263 65.0
Prupe.5G230500 Prunus persica HOM05D005102 ORTHO05D006090 4.2e-84 315.5 266 64.3
Atru.chr12.1207 Acer truncatum HOM05D005102 ORTHO05D006090 5.5e-84 315.1 256 66.8
FAN18G4219 Fragaria x ananassa HOM05D005102 ORTHO05D006090 9.3e-84 314.3 263 65.0
PSO764G0108 Papaver somniferum HOM05D005102 ORTHO05D006090 2.1e-83 313.2 255 68.2
FvH4_5g17100 Fragaria vesca HOM05D005102 ORTHO05D006090 2.7e-83 312.8 263 64.6
Medtr2g028660 Medicago truncatula HOM05D005102 ORTHO05D006090 2.7e-83 312.8 269 64.7
THA.LOC104808740 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 3.5e-83 312.4 256 66.8
DCAR_030764 Daucus carota HOM05D005102 ORTHO05D006090 1.0e-82 310.8 251 67.3
PSO170G5569 Papaver somniferum HOM05D005102 ORTHO05D006090 1.8e-82 310.1 253 67.6
HanXRQChr01g0011201 Helianthus annuus HOM05D005102 ORTHO05D006090 2.3e-82 309.7 250 67.6
CANSAT78G2207 Cannabis sativa HOM05D005102 ORTHO05D006090 3.9e-82 308.9 259 65.3
Nitab4.5_0005154g0050 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.9e-81 306.6 288 62.2
EL10Ac3g06678 Beta vulgaris HOM05D005102 ORTHO05D006090 9.6e-81 304.3 253 62.8
Ah.10g026170 Amaranthus hybridus HOM05D005102 ORTHO05D006090 1.6e-80 303.5 251 64.1
SEGI_01035 Sequoiadendron giganteum HOM05D005102 ORTHO05D006090 1.6e-80 303.5 249 66.3
arahy.Tifrunner.gnm1.ann1.Z186RR Arachis hypogaea HOM05D005102 ORTHO05D006090 2.1e-80 303.1 293 60.4
Potri.010G064900 Populus trichocarpa HOM05D005102 ORTHO05D006090 6.2e-80 301.6 251 65.3
Migut.G00562 Erythranthe guttata HOM05D005102 ORTHO05D006090 8.2e-80 301.2 263 63.9
THA.LOC104810405 Tarenaya hassleriana HOM05D005102 ORTHO05D006090 8.2e-80 301.2 254 65.4
GSVIVG01027934001 Vitis vinifera HOM05D005102 ORTHO05D006090 1.1e-79 300.8 253 65.2
AUR62018036 Chenopodium quinoa HOM05D005102 ORTHO05D006090 4.0e-79 298.9 251 62.9
CSS0019941 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.2e-78 297.4 254 66.1
CSS0043447 Camellia sinensis var. sinensis HOM05D005102 ORTHO05D006090 1.2e-78 297.4 254 66.1
Cc03_g06480 Coffea canephora HOM05D005102 ORTHO05D006090 1.5e-78 297.0 264 63.3
Sopen09g033820 Solanum pennellii HOM05D005102 ORTHO05D006090 2.6e-78 296.2 255 65.5
MD06G1229400 Malus domestica HOM05D005102 ORTHO05D006090 3.4e-78 295.8 266 61.3
Sc13g0003090 Simmondsia chinensis HOM05D005102 ORTHO05D006090 3.4e-78 295.8 281 59.8
Solyc09g090860.4 Solanum lycopersicum HOM05D005102 ORTHO05D006090 1.0e-77 294.3 255 65.1
CAN.G812.17 Capsicum annuum HOM05D005102 ORTHO05D006090 1.3e-77 293.9 253 65.6
AT3G24315 Arabidopsis thaliana HOM05D005102 ORTHO05D006090 2.2e-77 293.1 251 65.7
RcHm_v2.0_Chr7g0178711 Rosa chinensis HOM05D005102 ORTHO05D006090 2.2e-77 293.1 270 60.0
CARHR100410 Cardamine hirsuta HOM05D005102 ORTHO05D006090 1.9e-76 290.0 252 64.3
AL3G39760 Arabidopsis lyrata HOM05D005102 ORTHO05D006090 1.2e-75 287.3 249 65.1
Aa31LG8G11040 Aethionema arabicum HOM05D005102 ORTHO05D006090 4.6e-75 285.4 252 63.5
A07p08000 Brassica napus HOM05D005102 ORTHO05D006090 6.0e-75 285.0 249 63.5
BraA07t28587Z Brassica rapa HOM05D005102 ORTHO05D006090 6.0e-75 285.0 249 63.5
Carub.0003s2465 Capsella rubella HOM05D005102 ORTHO05D006090 6.0e-75 285.0 253 63.2
BcaB06g26613 Brassica carinata HOM05D005102 ORTHO05D006090 1.3e-74 283.9 249 63.1
Sp3g22120 Schrenkiella parvula HOM05D005102 ORTHO05D006090 1.8e-74 283.5 251 62.9
BolC7t41674H Brassica oleracea HOM05D005102 ORTHO05D006090 3.0e-74 282.7 249 63.5
Lsat_1_v5_gn_1_75501 Lactuca sativa HOM05D005102 ORTHO05D006090 3.9e-74 282.3 252 62.3
BcaC01g03326 Brassica carinata HOM05D005102 ORTHO05D006090 6.7e-74 281.6 249 63.1
BcaC06g35682 Brassica carinata HOM05D005102 ORTHO05D006090 6.7e-74 281.6 249 63.1
C07p12060 Brassica napus HOM05D005102 ORTHO05D006090 6.7e-74 281.6 249 63.1
Thhalv10002630m.g Eutrema salsugineum HOM05D005102 ORTHO05D006090 1.5e-73 280.4 250 63.2
C03p53630 Brassica napus HOM05D005102 ORTHO05D006090 2.5e-73 279.6 249 62.7
Lalb_Chr06g0169571 Lupinus albus HOM05D005102 ORTHO05D006090 3.3e-73 279.3 271 60.1
AUR62015240 Chenopodium quinoa HOM05D005102 ORTHO05D006090 4.3e-73 278.9 277 56.0
Sabra10G0042100 Salix brachista HOM05D005102 ORTHO05D006090 2.2e-72 276.6 249 62.7
Lj6A637G59 Lonicera japonica HOM05D005102 ORTHO05D006090 3.7e-72 275.8 317 53.9
Sed0020820 Sechium edule HOM05D005102 ORTHO05D006090 1.1e-71 274.2 253 59.7
Hund22254 Selenicereus undatus HOM05D005102 ORTHO05D006090 3.1e-71 272.7 327 49.8
Gohir.D02G049200 Gossypium hirsutum HOM05D005102 ORTHO05D006090 2.0e-70 270.0 225 65.8
BolC3t17623H Brassica oleracea HOM05D005102 ORTHO05D006090 2.6e-70 269.6 257 60.3
Rhsim01G0226300 Rhododendron simsii HOM05D005102 ORTHO05D006090 2.6e-70 269.6 295 55.3
MSTRG.9850 Avicennia marina HOM05D005102 ORTHO05D006090 7.7e-70 268.1 259 60.2
ClCG06G002570 Citrullus lanatus HOM05D005102 ORTHO05D006090 2.2e-69 266.5 253 58.5
Oeu047122.2 Olea europaea HOM05D005102 ORTHO05D006090 3.8e-69 265.8 343 49.0
PGSC0003DMG400001501 Solanum tuberosum HOM05D005102 ORTHO05D006090 7.2e-68 261.5 346 48.6
A03p43600 Brassica napus HOM05D005102 ORTHO05D006090 7.9e-67 258.1 252 60.7
SGA_v2.0_scaffold193G40717 Striga asiatica HOM05D005102 ORTHO05D006090 1.5e-65 253.8 219 64.8
SGA_v2.0_scaffold127G34013 Striga asiatica HOM05D005102 ORTHO05D006090 3.1e-63 246.1 268 56.0
SGA_v2.0_scaffold454G51888 Striga asiatica HOM05D005102 ORTHO05D006090 9.1e-63 244.6 266 55.3
CsaV3_6G008560 Cucumis sativus L. HOM05D005102 ORTHO05D006090 3.8e-61 239.2 238 58.0
TWI63G1490 Tripterygium wilfordii HOM05D005102 ORTHO05D006090 8.5e-61 238.0 230 59.6
MELO3C022272.2 Cucumis melo HOM05D005102 ORTHO05D006090 5.1e-58 228.8 251 53.8
vmacro04848 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 9.7e-57 224.6 156 76.3
vmacro20979 Vaccinium macrocarpon HOM05D005102 ORTHO05D006090 2.0e-54 216.9 216 60.6
Peaxi162Scf00531g00334 Petunia axillaris HOM05D005102 ORTHO05D006090 1.7e-53 213.8 174 68.4
AagrBONN_evm.TU.Sc2ySwM_228.1541 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.2e-53 213.4 258 48.1
AagrBONN_evm.TU.Sc2ySwM_368.1701 Anthoceros agrestis HOM05D005102 ORTHO05D006090 2.9e-53 213.0 258 48.1
BraA03t13497Z Brassica rapa HOM05D005102 ORTHO05D006090 3.8e-53 212.6 251 53.8
Mapoly0019s0137 Marchantia polymorpha HOM05D005102 ORTHO05D006090 1.8e-50 203.8 259 45.9
Cpa.g.sc59.14 Carica papaya HOM05D005102 ORTHO05D006090 3.9e-50 202.6 141 75.9
SMO364G0891 Selaginella moellendorffii HOM05D005102 ORTHO05D006090 1.3e-48 197.6 220 47.3
SalBow2G1408 Salvia bowleyana HOM05D005102 ORTHO05D006090 4.5e-46 189.1 183 59.6
Pp3c27_3370 Physcomitrium patens HOM05D005102 ORTHO05D006090 8.5e-45 184.9 238 45.8
ECA247G3419 Erigeron canadensis HOM05D005102 ORTHO05D006090 1.1e-44 184.5 141 71.6
Zm00001eb048840 Zea mays HOM05D005102 ORTHO05D006090 2.5e-44 183.3 162 59.9
SHI00826 Sapria himalayana HOM05D005102 ORTHO05D006090 9.7e-41 171.4 269 44.2
CBR_g37523 Chara braunii HOM05D005102 ORTHO05D006090 6.3e-40 168.7 232 44.8
Nitab4.5_0002613g0070 Nicotiana tabacum HOM05D005102 ORTHO05D006090 1.2e-38 164.5 117 75.2
Pp3c16_3280 Physcomitrium patens HOM05D005102 ORTHO05D006090 2.1e-35 153.7 236 41.1
Zm00001eb144710 Zea mays HOM05D005102 ORTHO05D006090 2.8e-32 143.3 174 48.3
Zm00001eb188010 Zea mays HOM05D005102 ORTHO05D006090 2.7e-30 136.7 118 59.3
Phvul.006G132800 Phaseolus vulgaris HOM05D005102 ORTHO05D006090 2.9e-29 133.3 149 54.4
Dinv30772 Davidia involucrata HOM05D005102 ORTHO05D006090 1.5e-28 131.0 80 86.2
Zm00001eb021120 Zea mays HOM05D005102 ORTHO05D006090 1.8e-26 124.0 105 59.0
Zm00001eb156410 Zea mays HOM05D005102 ORTHO05D006090 1.8e-26 124.0 105 59.0
Zm00001eb291560 Zea mays HOM05D005102 ORTHO05D006090 2.8e-24 116.7 105 56.2
Peaxi162Scf00531g00327 Petunia axillaris HOM05D000868 ORTHO05D000711 8.3e-24 115.2 100 63.0
arahy.Tifrunner.gnm1.ann1.4HQ694 Arachis hypogaea HOM05D005102 ORTHO05D006090 3.2e-23 113.2 87 69.0
unitig_748.g8293 Utricularia gibba HOM05D005102 ORTHO05D006090 4.5e-22 109.4 130 51.5
Eucgr.G00566 Eucalyptus grandis HOM05D005102 ORTHO05D006090 1.7e-21 107.5 77 70.1
Zm00001eb324110 Zea mays HOM05D005102 ORTHO05D006090 2.7e-14 83.6 67 59.7
PRCOL_00001816 Prasinoderma coloniale HOM05D005102 ORTHO05D006090 2.8e-11 73.6 205 30.2
CiPaw.02G105900 Carya illinoinensis HOM05D005102 ORTHO05D006090 1.1e-10 71.6 58 56.9
Cre02.g090650 Chlamydomonas reinhardtii HOM05D005102 ORTHO05D006090 1.1e-10 71.6 200 26.0
Zm00001eb049220 Zea mays HOM05D005102 ORTHO05D006090 3.1e-10 70.1 56 58.9
Zm00001eb318660 Zea mays HOM05D005102 ORTHO05D006090 3.1e-10 70.1 56 58.9
Zm00001eb402860 Zea mays HOM05D005102 ORTHO05D006090 3.1e-10 70.1 56 58.9
Zm00001eb423240 Zea mays HOM05D005102 ORTHO05D006090 3.1e-10 70.1 56 58.9
MCO03G437 Micromonas commoda HOM05D005102 ORTHO05D006090 6.0e-06 55.8 192 26.6


User provided reference genes

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