Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0787G168 Amborella trichopoda HOM05D006603 ORTHO05D007786 4.7e-80 301.2 159 100.0
MBI10_g39247_MAGBIO Magnolia biondii HOM05D006603 ORTHO05D007786 1.7e-42 176.4 141 63.1
TAR633G2131 Trochodendron aralioides HOM05D006603 ORTHO05D007786 3.7e-37 158.7 145 60.7
PSO210G0805 Papaver somniferum HOM05D006603 ORTHO05D007786 7.8e-35 151.0 143 60.8
Aqoxy2G03755 Aquilegia oxysepala HOM05D006603 ORTHO05D007786 2.3e-34 149.4 148 54.1
CANSAT78G1588 Cannabis sativa HOM05D006603 ORTHO05D007786 5.1e-34 148.3 151 58.3
Actinidia11378 Actinidia chinensis HOM05D006603 ORTHO05D007786 8.6e-34 147.5 140 58.6
CiPaw.01G176600 Carya illinoinensis HOM05D006603 ORTHO05D007786 1.9e-33 146.4 138 60.1
Ciclev10006126m.g Citrus clementina HOM05D006603 ORTHO05D007786 1.9e-33 146.4 154 55.2
PSO210G7184 Papaver somniferum HOM05D006603 ORTHO05D007786 2.5e-33 146.0 145 60.7
Actinidia39936 Actinidia chinensis HOM05D006603 ORTHO05D007786 3.3e-33 145.6 140 57.9
Psat6g018400 Pisum sativum HOM05D006603 ORTHO05D007786 4.3e-33 145.2 142 57.0
Dinv29792 Davidia involucrata HOM05D006603 ORTHO05D007786 7.3e-33 144.4 140 58.6
EL10Ac3g06681 Beta vulgaris HOM05D006603 ORTHO05D007786 9.5e-33 144.1 144 55.6
TPR.G23967 Trifolium pratense HOM05D006603 ORTHO05D007786 1.2e-32 143.7 143 58.0
Glyma.20G082000 Glycine max HOM05D006603 ORTHO05D007786 1.6e-32 143.3 142 57.0
Medtr1g045660 Medicago truncatula HOM05D006603 ORTHO05D007786 2.8e-32 142.5 143 55.9
Lalb_Chr03g0036931 Lupinus albus HOM05D006603 ORTHO05D007786 3.6e-32 142.1 148 53.4
MD13G1223900 Malus domestica HOM05D006603 ORTHO05D007786 3.6e-32 142.1 148 56.1
GSVIVG01027941001 Vitis vinifera HOM05D006603 ORTHO05D007786 6.2e-32 141.4 137 58.4
Manes.03G157300 Manihot esculenta HOM05D006603 ORTHO05D007786 1.1e-31 140.6 144 54.9
MD16G1228700 Malus domestica HOM05D006603 ORTHO05D007786 1.4e-31 140.2 148 56.8
RcHm_v2.0_Chr4g0395941 Rosa chinensis HOM05D006603 ORTHO05D007786 1.4e-31 140.2 144 58.3
TWI73G0993 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 1.4e-31 140.2 143 55.2
FAN12G4195 Fragaria x ananassa HOM05D006603 ORTHO05D007786 2.3e-31 139.4 152 53.3
Gohir.A09G230800 Gossypium hirsutum HOM05D006603 ORTHO05D007786 2.3e-31 139.4 143 58.0
Gohir.D09G231900 Gossypium hirsutum HOM05D006603 ORTHO05D007786 2.3e-31 139.4 143 58.0
Lj6g0018890 Lotus japonicus HOM05D006603 ORTHO05D007786 3.1e-31 139.0 143 58.0
FAN22G1779 Fragaria x ananassa HOM05D006603 ORTHO05D007786 6.8e-31 137.9 152 52.6
Phvul.007G231900 Phaseolus vulgaris HOM05D006603 ORTHO05D007786 6.8e-31 137.9 140 57.1
Ca_25848_v3 Cicer arietinum L. HOM05D006603 ORTHO05D007786 1.2e-30 137.1 140 55.7
FvH4_4g05040 Fragaria vesca HOM05D006603 ORTHO05D007786 1.5e-30 136.7 152 52.6
Thecc.04G267600 Theobroma cacao HOM05D006603 ORTHO05D007786 2.0e-30 136.3 143 58.0
MELO3C023048.2 Cucumis melo HOM05D006603 ORTHO05D007786 2.6e-30 136.0 140 58.6
TWI09G1292 Tripterygium wilfordii HOM05D006603 ORTHO05D007786 2.6e-30 136.0 143 55.9
Eucgr.H02902 Eucalyptus grandis HOM05D006603 ORTHO05D007786 7.6e-30 134.4 141 56.0
Hma1.2p1_0112F.1_g054890 Hydrangea macrophylla HOM05D006603 ORTHO05D007786 7.6e-30 134.4 138 54.3
CsaV3_2G012360 Cucumis sativus L. HOM05D006603 ORTHO05D007786 2.9e-29 132.5 140 56.4
CSS0001604 Camellia sinensis var. sinensis HOM05D006603 ORTHO05D007786 3.7e-29 132.1 141 52.5
Hund22279 Selenicereus undatus HOM05D006603 ORTHO05D007786 4.9e-29 131.7 141 55.3
Duzib151G0118 Durio zibethinus HOM05D006603 ORTHO05D007786 6.4e-29 131.3 138 57.2
Sc25g0004840 Simmondsia chinensis HOM05D006603 ORTHO05D007786 6.4e-29 131.3 141 54.6
Potri.008G173000 Populus trichocarpa HOM05D006603 ORTHO05D007786 2.4e-28 129.4 139 52.5
Potri.010G064500 Populus trichocarpa HOM05D006603 ORTHO05D007786 2.4e-28 129.4 144 54.2
THA.LOC104816009 Tarenaya hassleriana HOM05D006603 ORTHO05D007786 7.1e-28 127.9 139 54.7
arahy.Tifrunner.gnm1.ann1.T2GGRX Arachis hypogaea HOM05D006603 ORTHO05D007786 2.1e-27 126.3 174 46.6
arahy.Tifrunner.gnm1.ann1.GIKJ41 Arachis hypogaea HOM05D006603 ORTHO05D007786 2.7e-27 125.9 174 47.1
Thhalv10009014m.g Eutrema salsugineum HOM05D006603 ORTHO05D007786 6.0e-27 124.8 135 57.8
Duzib212G0187 Durio zibethinus HOM05D006603 ORTHO05D007786 1.3e-26 123.6 141 53.2
BolC5t29054H Brassica oleracea HOM05D006603 ORTHO05D007786 1.7e-26 123.2 136 54.4
Carub.0001s0377 Capsella rubella HOM05D006603 ORTHO05D007786 2.3e-26 122.9 151 51.0
PGR004G2303 Punica granatum HOM05D006603 ORTHO05D007786 2.3e-26 122.9 139 53.2
CDE04G0122 Ceratophyllum demersum HOM05D006603 ORTHO05D007786 3.0e-26 122.5 142 49.3
Cc03_g06500 Coffea canephora HOM05D006603 ORTHO05D007786 3.9e-26 122.1 140 54.3
Os02g0816700 Oryza sativa ssp. japonica HOM05D006603 ORTHO05D007786 8.6e-26 120.9 146 49.3
CAN.G812.23 Capsicum annuum HOM05D006603 ORTHO05D007786 1.1e-25 120.6 137 51.1
BraA10t42567Z Brassica rapa HOM05D006603 ORTHO05D007786 1.5e-25 120.2 137 54.7
Manes.15G046500 Manihot esculenta HOM05D006603 ORTHO05D007786 1.5e-25 120.2 136 52.2
Sp1g03390 Schrenkiella parvula HOM05D006603 ORTHO05D007786 1.5e-25 120.2 142 52.8
Nitab4.5_0005154g0030 Nicotiana tabacum HOM05D006603 ORTHO05D007786 3.3e-25 119.0 137 50.4
HanXRQChr01g0023081 Helianthus annuus HOM05D006603 ORTHO05D007786 4.3e-25 118.6 138 47.8
AL1G14230 Arabidopsis lyrata HOM05D006603 ORTHO05D007786 5.6e-25 118.2 137 54.7
AT1G04555 Arabidopsis thaliana HOM05D006603 ORTHO05D007786 9.6e-25 117.5 137 53.3
Lsat_1_v5_gn_1_75441 Lactuca sativa HOM05D006603 ORTHO05D007786 9.6e-25 117.5 135 49.6
vmacro15486 Vaccinium macrocarpon HOM05D006603 ORTHO05D007786 1.6e-24 116.7 163 46.6
Peaxi162Scf00531g00210 Petunia axillaris HOM05D006603 ORTHO05D007786 3.6e-24 115.5 138 46.4
BcaNung06560 Brassica carinata HOM05D006603 ORTHO05D007786 4.7e-24 115.2 155 51.0
Prupe.1G050700 Prunus persica HOM05D006603 ORTHO05D007786 1.1e-23 114.0 158 50.6
VMungo0720G0308 Vigna mungo HOM05D006603 ORTHO05D007786 5.2e-23 111.7 118 55.9
Sopen09g033770 Solanum pennellii HOM05D006603 ORTHO05D007786 6.8e-23 111.3 137 46.0
MSTRG.9849 Avicennia marina HOM05D006603 ORTHO05D007786 8.9e-23 110.9 139 46.0
PGSC0003DMG400001502 Solanum tuberosum HOM05D006603 ORTHO05D007786 1.2e-22 110.5 137 46.0
Haze_11482 Corylus avellana HOM05D006603 ORTHO05D007786 1.5e-22 110.2 92 69.6
Oeu059390.1 Olea europaea HOM05D006603 ORTHO05D007786 2.0e-22 109.8 140 47.9
QL06p021600 Quercus lobata HOM05D006603 ORTHO05D007786 2.0e-22 109.8 97 64.9
SGA_v2.0_scaffold147G36268 Striga asiatica HOM05D006603 ORTHO05D007786 2.0e-22 109.8 139 49.6
CARHR003900 Cardamine hirsuta HOM05D006603 ORTHO05D007786 2.6e-22 109.4 129 54.3
Aa31LG1G20320 Aethionema arabicum HOM05D006603 ORTHO05D007786 7.6e-22 107.8 135 51.1
AUR62018035 Chenopodium quinoa HOM05D006603 ORTHO05D007786 1.7e-21 106.7 117 52.1
COL.COLO4_15990 Corchorus olitorius HOM05D006603 ORTHO05D007786 2.9e-21 105.9 117 56.4
AUR62015239 Chenopodium quinoa HOM05D006603 ORTHO05D007786 3.8e-21 105.5 116 51.7
ECA248G1661 Erigeron canadensis HOM05D006603 ORTHO05D007786 3.8e-21 105.5 135 45.9
BolC8t46924H Brassica oleracea HOM05D006603 ORTHO05D007786 8.4e-21 104.4 136 51.5
BolC8t46925H Brassica oleracea HOM05D006603 ORTHO05D007786 8.4e-21 104.4 136 51.5
BolC8t46928H Brassica oleracea HOM05D006603 ORTHO05D007786 1.9e-20 103.2 136 51.5
Migut.G00559 Erythranthe guttata HOM05D006603 ORTHO05D007786 1.9e-20 103.2 139 43.9
Cfa014798 Carpinus fangiana HOM05D006603 ORTHO05D007786 2.4e-20 102.8 91 64.8
A08p36880 Brassica napus HOM05D006603 ORTHO05D007786 4.2e-20 102.1 136 51.5
FAN17G1046 Fragaria x ananassa HOM05D006603 ORTHO05D007786 4.2e-20 102.1 91 67.0
Gorai.006G254700 Gossypium raimondii HOM05D006603 ORTHO05D007786 5.4e-20 101.7 117 53.8
Sabra08G0132100 Salix brachista HOM05D006603 ORTHO05D007786 5.4e-20 101.7 96 60.4
Sed0025873 Sechium edule HOM05D006603 ORTHO05D007786 5.4e-20 101.7 119 53.8
Rhsim02G0047700 Rhododendron simsii HOM05D006603 ORTHO05D007786 1.6e-19 100.1 114 50.0
BcaC07g36903 Brassica carinata HOM05D006603 ORTHO05D007786 2.1e-19 99.8 133 51.9
BolC8t46922H Brassica oleracea HOM05D006603 ORTHO05D007786 2.1e-19 99.8 135 49.6
Ah.04g153810 Amaranthus hybridus HOM05D006603 ORTHO05D007786 2.7e-19 99.4 115 53.0
Zm00001eb191430 Zea mays HOM05D006603 ORTHO05D007786 2.7e-19 99.4 96 60.4
ClCG06G007300 Citrullus lanatus HOM05D006603 ORTHO05D007786 5.1e-18 95.1 148 45.9
C05p02730 Brassica napus HOM05D001210 ORTHO05D001036 8.7e-18 94.4 114 51.8
HPP92_020757 Vanilla planifolia HOM05D006603 ORTHO05D007786 3.3e-17 92.4 146 39.0
Cfa014800 Carpinus fangiana HOM05D006603 ORTHO05D007786 1.3e-16 90.5 78 65.4
Solyc09g090820.4 Solanum lycopersicum HOM05D006603 ORTHO05D007786 6.2e-16 88.2 90 55.6
DCAR_027355 Daucus carota HOM05D004511 ORTHO05D005348 3.1e-15 85.9 92 56.5
unitig_32.g11693 Utricularia gibba HOM05D006603 ORTHO05D007786 3.1e-15 85.9 162 36.4
BcaB03g13488 Brassica carinata HOM05D006603 ORTHO05D007786 5.3e-15 85.1 122 48.4
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 1.2e-14 84.0 90 62.2
BolC8t52747H Brassica oleracea HOM05D000117 ORTHO05D007786 3.4e-14 82.4 139 43.9
BraA08t35589Z Brassica rapa HOM05D003335 ORTHO05D003853 5.8e-14 81.6 90 61.1
BraA09t42112Z Brassica rapa HOM05D000117 ORTHO05D007786 7.6e-14 81.3 89 60.7
arahy.Tifrunner.gnm1.ann1.QP5CHE Arachis hypogaea HOM05D006603 ORTHO05D007786 2.9e-13 79.3 124 45.2
SalBow2G0496 Salvia bowleyana HOM05D006603 ORTHO05D007786 3.8e-13 79.0 123 43.9
Nn1g02998 Nelumbo nucifera HOM05D006603 ORTHO05D007786 4.9e-13 78.6 72 58.3
Nitab4.5_0001041g0010 Nicotiana tabacum HOM05D006603 ORTHO05D007786 2.4e-12 76.3 117 42.7
Cpa.g.sc59.20 Carica papaya HOM05D006603 ORTHO05D007786 5.4e-12 75.1 73 57.5
Dinv27124 Davidia involucrata HOM05D006603 ORTHO05D007786 1.6e-11 73.6 81 53.1
GSVIVG01027940001 Vitis vinifera HOM05D006603 ORTHO05D015671 4.6e-11 72.0 98 46.9
arahy.Tifrunner.gnm1.ann1.YUK4FD Arachis hypogaea HOM05D006603 ORTHO05D007786 1.3e-10 70.5 141 39.7
arahy.Tifrunner.gnm1.ann1.M12JR8 Arachis hypogaea HOM05D006603 ORTHO05D007786 5.1e-10 68.6 145 37.9
Mapoly0020s0146 Marchantia polymorpha HOM05D002103 ORTHO05D007786 5.1e-10 68.6 146 32.2
SMO144G0051 Selaginella moellendorffii HOM05D002103 ORTHO05D007786 5.1e-10 68.6 144 31.2
Hma1.2p1_0982F.1_g243900 Hydrangea macrophylla HOM05D002103 ORTHO05D004020 1.5e-09 67.0 149 33.6
AagrBONN_evm.TU.Sc2ySwM_228.3673 Anthoceros agrestis HOM05D002103 ORTHO05D004020 3.3e-09 65.9 140 34.3
arahy.Tifrunner.gnm1.ann1.N50CGY Arachis hypogaea HOM05D006603 ORTHO05D007786 1.3e-08 63.9 93 49.5
Sabra10G0042500 Salix brachista HOM05D006603 ORTHO05D007786 1.3e-08 63.9 89 43.8
Cfa018527 Carpinus fangiana HOM05D002103 ORTHO05D004020 2.1e-08 63.2 142 33.1
SMO271G0137 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 3.6e-08 62.4 138 31.9
arahy.Tifrunner.gnm1.ann1.49WF5R Arachis hypogaea HOM05D006603 ORTHO05D007786 4.8e-08 62.0 86 51.2
SMO308G0045 Selaginella moellendorffii HOM05D002103 ORTHO05D004020 1.1e-07 60.8 134 32.1
SEGI_34793 Sequoiadendron giganteum HOM05D009513 ORTHO05D000002 1.8e-07 60.1 67 47.8
Pp3c19_17840 Physcomitrium patens HOM05D002103 ORTHO05D004020 3.1e-07 59.3 149 30.2
CiPaw.15G061600 Carya illinoinensis HOM05D002103 ORTHO05D004020 4.0e-07 58.9 147 33.3
CiPaw.16G045800 Carya illinoinensis HOM05D002103 ORTHO05D004020 5.3e-07 58.5 139 33.8
A09p67800 Brassica napus HOM05D000117 ORTHO05D001036 1.2e-06 57.4 58 63.8
AagrBONN_evm.TU.Sc2ySwM_362.2116 Anthoceros agrestis HOM05D006603 ORTHO05D007786 1.5e-06 57.0 140 32.1
CANSAT01G2416 Cannabis sativa HOM05D002103 ORTHO05D004020 1.5e-06 57.0 145 30.3
Duzib093G0320 Durio zibethinus HOM05D002103 ORTHO05D004020 1.5e-06 57.0 148 29.1
Sp7g31080 Schrenkiella parvula HOM05D002103 ORTHO05D004020 1.5e-06 57.0 150 26.7
Thhalv10025691m.g Eutrema salsugineum HOM05D002103 ORTHO05D004020 2.0e-06 56.6 150 27.3
Potri.014G031900 Populus trichocarpa HOM05D002103 ORTHO05D004020 2.0e-06 56.6 133 34.6
Atru.chr13.650 Acer truncatum HOM05D002103 ORTHO05D004020 2.6e-06 56.2 144 30.6
BcaC09g52145 Brassica carinata HOM05D002103 ORTHO05D004020 2.6e-06 56.2 141 28.4
BolC1t00510H Brassica oleracea HOM05D002103 ORTHO05D004020 2.6e-06 56.2 141 28.4
CARHR241420 Cardamine hirsuta HOM05D002103 ORTHO05D004020 3.4e-06 55.8 149 26.2
Gohir.D06G015300 Gossypium hirsutum HOM05D002103 ORTHO05D004020 3.4e-06 55.8 127 29.9
Thecc.08G010900 Theobroma cacao HOM05D002103 ORTHO05D004020 3.4e-06 55.8 136 29.4
TAR625G1123 Trochodendron aralioides HOM05D002103 ORTHO05D004020 3.4e-06 55.8 152 28.9
BraA01t00472Z Brassica rapa HOM05D002198 ORTHO05D004020 4.5e-06 55.5 141 28.4
COL.COLO4_26478 Corchorus olitorius HOM05D002103 ORTHO05D004020 4.5e-06 55.5 136 29.4
Dinv35973 Davidia involucrata HOM05D002103 ORTHO05D004020 4.5e-06 55.5 135 31.1
Gohir.A06G017200 Gossypium hirsutum HOM05D002103 ORTHO05D004020 5.8e-06 55.1 127 29.1
Phvul.009G063800 Phaseolus vulgaris HOM05D002103 ORTHO05D004020 5.8e-06 55.1 139 30.9
VMungo1309G0516 Vigna mungo HOM05D002103 ORTHO05D004020 7.6e-06 54.7 130 31.5
arahy.Tifrunner.gnm1.ann1.75Q1P4 Arachis hypogaea HOM05D002103 ORTHO05D004020 9.9e-06 54.3 145 29.7
A01p04900 Brassica napus HOM05D002198 ORTHO05D004020 9.9e-06 54.3 141 27.7
CSS0022390 Camellia sinensis var. sinensis HOM05D002103 ORTHO05D004020 9.9e-06 54.3 148 29.1
THA.LOC104803681 Tarenaya hassleriana HOM05D002103 ORTHO05D004020 9.9e-06 54.3 140 27.1


User provided reference genes

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