Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0787G156 Amborella trichopoda HOM05D005505 ORTHO05D006974 7.2e-311 1069.7 529 100.0
MBI10_g16825_MAGBIO Magnolia biondii HOM05D005505 ORTHO05D006974 9.4e-202 707.2 510 69.8
TAR636G3130 Trochodendron aralioides HOM05D005505 ORTHO05D006974 2.8e-198 695.7 511 68.9
COL.COLO4_20306 Corchorus olitorius HOM05D005505 ORTHO05D006974 1.7e-190 669.8 499 67.3
Nn8g40056 Nelumbo nucifera HOM05D005505 ORTHO05D006974 2.2e-190 669.5 511 64.4
Ciclev10004754m.g Citrus clementina HOM05D005505 ORTHO05D006974 6.3e-190 667.9 500 68.0
Potri.001G051200 Populus trichocarpa HOM05D005505 ORTHO05D006974 1.4e-189 666.8 501 66.9
Actinidia35954 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.6e-188 663.3 521 64.9
Manes.03G149700 Manihot esculenta HOM05D005505 ORTHO05D006974 7.7e-188 661.0 498 66.7
Thecc.04G209900 Theobroma cacao HOM05D005505 ORTHO05D006974 8.5e-187 657.5 499 64.7
QL09p050425 Quercus lobata HOM05D005505 ORTHO05D006974 3.6e-185 652.1 469 67.8
Gohir.A09G202800 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.4e-184 650.2 500 64.0
Gorai.006G220300 Gossypium raimondii HOM05D005505 ORTHO05D006974 2.0e-183 646.4 500 63.8
vmacro00503 Vaccinium macrocarpon HOM05D005505 ORTHO05D006974 2.6e-183 646.0 500 65.0
Duzib212G0911 Durio zibethinus HOM05D005505 ORTHO05D006974 5.7e-183 644.8 522 62.5
MELO3C016329.2 Cucumis melo HOM05D005505 ORTHO05D006974 1.7e-182 643.3 497 65.8
Gohir.D09G196900 Gossypium hirsutum HOM05D005505 ORTHO05D006974 2.2e-182 642.9 500 63.4
CiPaw.02G067600 Carya illinoinensis HOM05D005505 ORTHO05D006974 6.3e-182 641.3 494 64.8
TWI53G0062 Tripterygium wilfordii HOM05D005505 ORTHO05D006974 1.4e-181 640.2 500 66.0
CsaV3_4G006210 Cucumis sativus L. HOM05D005505 ORTHO05D006974 1.8e-181 639.8 498 65.5
Prupe.5G110900 Prunus persica HOM05D005505 ORTHO05D006974 1.8e-181 639.8 501 64.9
FAN18G0472 Fragaria x ananassa HOM05D005505 ORTHO05D006974 1.3e-179 633.6 495 65.3
RcHm_v2.0_Chr7g0196051 Rosa chinensis HOM05D005505 ORTHO05D006974 1.7e-179 633.3 511 64.2
FAN13G1424 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.3e-179 632.9 495 65.3
ClCG07G007730 Citrullus lanatus HOM05D005505 ORTHO05D006974 2.9e-179 632.5 543 60.8
Cc03_g07370 Coffea canephora HOM05D005505 ORTHO05D006974 2.9e-179 632.5 510 62.5
Atru.chr4.1761 Acer truncatum HOM05D005505 ORTHO05D006974 3.8e-179 632.1 503 64.4
Aqoxy2G03778 Aquilegia oxysepala HOM05D005505 ORTHO05D006974 1.1e-178 630.6 521 62.4
DCAR_030788 Daucus carota HOM05D005505 ORTHO05D006974 1.1e-178 630.6 505 62.0
arahy.Tifrunner.gnm1.ann1.ZRDJ5X Arachis hypogaea HOM05D005505 ORTHO05D006974 4.2e-178 628.6 501 63.7
arahy.Tifrunner.gnm1.ann1.QX4MR3 Arachis hypogaea HOM05D005505 ORTHO05D006974 7.2e-178 627.9 508 62.8
HanXRQChr10g0278391 Helianthus annuus HOM05D005505 ORTHO05D006974 9.5e-178 627.5 506 63.8
Sabra01G0035800 Salix brachista HOM05D005505 ORTHO05D006974 1.2e-177 627.1 584 56.8
Lalb_Chr19g0126031 Lupinus albus HOM05D005505 ORTHO05D006974 1.6e-177 626.7 498 61.8
THA.LOC104821613 Tarenaya hassleriana HOM05D005505 ORTHO05D006974 2.8e-177 625.9 480 64.4
FvH4_5g03680 Fragaria vesca HOM05D005505 ORTHO05D006974 1.0e-176 624.0 495 65.5
arahy.Tifrunner.gnm1.ann1.H9DAM7 Arachis hypogaea HOM05D005505 ORTHO05D006974 1.8e-176 623.2 498 63.5
Eucgr.H00086 Eucalyptus grandis HOM05D005505 ORTHO05D006974 1.8e-176 623.2 500 62.6
FAN13G2718 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.3e-176 622.9 503 64.0
PSO017G4123 Papaver somniferum HOM05D005505 ORTHO05D006974 2.3e-176 622.9 467 66.4
Sed0009691 Sechium edule HOM05D005505 ORTHO05D006974 4.0e-176 622.1 497 63.4
ECA233G0503 Erigeron canadensis HOM05D005505 ORTHO05D006974 5.2e-176 621.7 505 62.8
Rhsim09G0051500 Rhododendron simsii HOM05D005505 ORTHO05D006974 5.2e-176 621.7 562 58.0
SalBow2G0189 Salvia bowleyana HOM05D005505 ORTHO05D006974 8.9e-176 620.9 523 61.2
TPR.G26848 Trifolium pratense HOM05D005505 ORTHO05D006974 2.6e-175 619.4 500 61.8
PSO063G3796 Papaver somniferum HOM05D005505 ORTHO05D006974 4.4e-175 618.6 470 65.3
Lalb_Chr03g0041191 Lupinus albus HOM05D005505 ORTHO05D006974 7.5e-175 617.8 498 61.6
PGR142G3770 Punica granatum HOM05D005505 ORTHO05D006974 7.5e-175 617.8 519 60.1
MSTRG.9830 Avicennia marina HOM05D005505 ORTHO05D006974 1.3e-174 617.1 523 61.6
Zm00001eb211070 Zea mays HOM05D005505 ORTHO05D006974 1.7e-174 616.7 503 61.2
MD06G1096300 Malus domestica HOM05D005505 ORTHO05D006974 6.3e-174 614.8 512 61.3
Phvul.008G135500 Phaseolus vulgaris HOM05D005505 ORTHO05D006974 6.3e-174 614.8 498 61.2
Sopen09g034490 Solanum pennellii HOM05D005505 ORTHO05D006974 2.4e-173 612.8 474 63.7
Migut.G00632 Erythranthe guttata HOM05D005505 ORTHO05D006974 5.4e-173 611.7 480 64.6
Os03g0839100 Oryza sativa ssp. japonica HOM05D005505 ORTHO05D006974 5.4e-173 611.7 470 63.4
Solyc09g091570.2 Solanum lycopersicum HOM05D005505 ORTHO05D006974 7.0e-173 611.3 499 61.5
CANSAT21G2364 Cannabis sativa HOM05D005505 ORTHO05D006974 1.2e-172 610.5 503 62.6
Lj1g0020537 Lotus japonicus HOM05D005505 ORTHO05D006974 2.0e-172 609.8 501 60.5
Ca_07402_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 2.7e-172 609.4 480 62.9
Lsat_1_v5_gn_2_43080 Lactuca sativa HOM05D005505 ORTHO05D006974 3.5e-172 609.0 503 61.2
Medtr2g060550 Medicago truncatula HOM05D005505 ORTHO05D006974 4.5e-172 608.6 500 60.8
CAN.G500.70 Capsicum annuum HOM05D005505 ORTHO05D006974 1.3e-171 607.1 474 63.7
Glyma.08G345200 Glycine max HOM05D005505 ORTHO05D006974 1.3e-171 607.1 483 62.1
A07p08370 Brassica napus HOM05D005505 ORTHO05D006974 1.7e-171 606.7 529 58.2
SGA_v2.0_scaffold380G50374 Striga asiatica HOM05D005505 ORTHO05D006974 1.7e-171 606.7 475 64.0
C07p13070 Brassica napus HOM05D005505 ORTHO05D006974 2.9e-171 605.9 481 63.0
C09p75660 Brassica napus HOM05D005505 ORTHO05D006974 2.9e-171 605.9 481 63.0
BcaB06g26566 Brassica carinata HOM05D005505 ORTHO05D006974 5.0e-171 605.1 481 63.2
BcaC06g35602 Brassica carinata HOM05D005505 ORTHO05D006974 6.6e-171 604.7 481 63.0
BolC7t41801H Brassica oleracea HOM05D005505 ORTHO05D006974 6.6e-171 604.7 481 63.0
BraA07t28623Z Brassica rapa HOM05D005505 ORTHO05D006974 6.6e-171 604.7 528 58.5
Lj5g0018216 Lotus japonicus HOM05D005505 ORTHO05D006974 1.1e-170 604.0 499 60.5
Psat7g176120 Pisum sativum HOM05D005505 ORTHO05D006974 3.3e-170 602.4 488 61.9
FAN08G1440 Fragaria x ananassa HOM05D005505 ORTHO05D006974 2.1e-169 599.7 497 63.4
AT3G24200 Arabidopsis thaliana HOM05D005505 ORTHO05D006974 2.8e-169 599.4 470 63.8
Carub.0003s2430 Capsella rubella HOM05D005505 ORTHO05D006974 4.7e-169 598.6 490 62.0
Thhalv10002522m.g Eutrema salsugineum HOM05D005505 ORTHO05D006974 1.8e-168 596.7 469 63.8
Psat3g151840 Pisum sativum HOM05D005505 ORTHO05D006974 1.8e-168 596.7 500 59.6
Sc24g0002560 Simmondsia chinensis HOM05D005505 ORTHO05D006974 3.0e-168 595.9 522 58.2
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 5.2e-168 595.1 504 61.7
Nitab4.5_0000306g0020 Nicotiana tabacum HOM05D005505 ORTHO05D006974 6.8e-168 594.7 487 60.8
SGA_v2.0_scaffold57G20149 Striga asiatica HOM05D005505 ORTHO05D006974 6.8e-168 594.7 480 61.2
GSVIVG01012536001 Vitis vinifera HOM05D005505 ORTHO05D006974 1.2e-167 594.0 462 64.9
CARHR099990 Cardamine hirsuta HOM05D005505 ORTHO05D006974 3.4e-167 592.4 487 61.0
FAN04G0744 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.5e-167 591.3 495 61.8
FAN04G1715 Fragaria x ananassa HOM05D005505 ORTHO05D006974 7.5e-167 591.3 495 61.8
Lj3C565G3 Lonicera japonica HOM05D005505 ORTHO05D006974 1.3e-166 590.5 446 66.8
Nitab4.5_0004881g0030 Nicotiana tabacum HOM05D005505 ORTHO05D006974 1.8e-165 586.6 480 60.8
Duzib151G0717 Durio zibethinus HOM05D005505 ORTHO05D006974 3.5e-164 582.4 499 59.7
EL10Ac7g18096 Beta vulgaris HOM05D005505 ORTHO05D006974 4.6e-164 582.0 487 60.0
Cpa.g.sc59.105 Carica papaya HOM05D005505 ORTHO05D006974 1.7e-163 580.1 582 55.0
AUR62025680 Chenopodium quinoa HOM05D005505 ORTHO05D006974 3.9e-163 578.9 480 61.0
Lj3A577G5 Lonicera japonica HOM05D005505 ORTHO05D006974 5.0e-163 578.6 556 55.9
AUR62001295 Chenopodium quinoa HOM05D005505 ORTHO05D006974 1.1e-162 577.4 498 59.6
unitig_32.g10868 Utricularia gibba HOM05D005505 ORTHO05D006974 2.5e-162 576.2 469 59.9
Peaxi162Scf00047g01039 Petunia axillaris HOM05D005505 ORTHO05D006974 1.2e-161 573.9 482 61.0
PGSC0003DMG400029626 Solanum tuberosum HOM05D005505 ORTHO05D006974 3.6e-161 572.4 442 63.6
Aa31LG8G10580 Aethionema arabicum HOM05D005505 ORTHO05D006974 8.0e-161 571.2 503 58.8
SEGI_35699 Sequoiadendron giganteum HOM05D005505 ORTHO05D006974 2.0e-159 566.6 470 59.8
Medtr7g051960 Medicago truncatula HOM05D005505 ORTHO05D006974 3.2e-157 559.3 440 61.8
Hund05658 Selenicereus undatus HOM05D005505 ORTHO05D006974 9.2e-157 557.8 547 54.5
Sp3g21750 Schrenkiella parvula HOM05D005505 ORTHO05D006974 4.6e-148 528.9 441 60.5
SHI00938 Sapria himalayana HOM05D005505 ORTHO05D006974 1.8e-144 516.9 468 56.0
Lj3A578G8 Lonicera japonica HOM05D005505 ORTHO05D006974 2.7e-140 503.1 378 67.2
MD14G1116500 Malus domestica HOM05D005505 ORTHO05D006974 1.0e-139 501.1 436 58.5
Haze_11578 Corylus avellana HOM05D005505 ORTHO05D006974 2.8e-137 493.0 364 67.9
Lj3A579T16 Lonicera japonica HOM05D005505 ORTHO05D006974 2.8e-137 493.0 422 60.9
CDE02G0375 Ceratophyllum demersum HOM05D005505 ORTHO05D006974 1.8e-136 490.3 384 63.8
BcaC05g30344 Brassica carinata HOM05D005505 ORTHO05D007330 7.3e-130 468.4 528 48.1
Dinv38263 Davidia involucrata HOM05D005505 ORTHO05D006974 1.4e-128 464.2 368 63.9
Mapoly0028s0013 Marchantia polymorpha HOM05D005505 ORTHO05D006974 1.4e-128 464.2 495 49.5
Pp3c26_12110 Physcomitrium patens HOM05D005505 ORTHO05D006974 1.5e-122 444.1 466 50.0
SpUn0001_0240 Schrenkiella parvula HOM05D005505 ORTHO05D006974 9.6e-122 441.4 456 52.2
SMO351G0576 Selaginella moellendorffii HOM05D005505 ORTHO05D006974 3.5e-116 422.9 448 50.2
Lj3A580T64 Lonicera japonica HOM05D005505 ORTHO05D006974 1.6e-105 387.5 398 55.0
arahy.Tifrunner.gnm1.ann1.NU2AG4 Arachis hypogaea HOM05D005505 ORTHO05D006974 5.5e-101 372.5 358 53.6
SpUn0001_0260 Schrenkiella parvula HOM05D005505 ORTHO05D006974 9.7e-98 361.7 518 41.7
Gohir.D09G197033 Gossypium hirsutum HOM05D005505 ORTHO05D006974 1.3e-94 351.3 276 63.0
Lj3A565G17 Lonicera japonica HOM05D005505 ORTHO05D006974 1.4e-93 347.8 332 56.9
MCO15G051 Micromonas commoda HOM05D005505 ORTHO05D006974 7.7e-79 298.9 473 38.3
Cre02.g112850 Chlamydomonas reinhardtii HOM05D005505 ORTHO05D006974 9.4e-77 292.0 460 38.5
CAN.G220.36 Capsicum annuum HOM05D005505 ORTHO05D006974 5.3e-72 276.2 698 31.7
HPP92_019865 Vanilla planifolia HOM05D005505 ORTHO05D006974 1.1e-69 268.5 457 39.4
PRCOL_00000308 Prasinoderma coloniale HOM05D005505 ORTHO05D006974 5.2e-59 233.0 377 37.9
AL3G39020 Arabidopsis lyrata HOM05D005505 ORTHO05D006974 2.4e-56 224.2 201 59.2
BolC5t35086H Brassica oleracea HOM05D005505 ORTHO05D006974 3.6e-52 210.3 162 64.2
Lj3A566G16 Lonicera japonica HOM05D005505 ORTHO05D006974 6.1e-52 209.5 156 69.2
Cfa022008 Carpinus fangiana HOM05D005505 ORTHO05D006974 1.3e-49 201.8 485 31.1
CBR_g34017 Chara braunii HOM05D005505 ORTHO05D006974 9.2e-40 169.1 213 42.3
CBR_g34015 Chara braunii HOM05D005505 ORTHO05D006974 7.8e-39 166.0 249 41.0
SpUn0242_NC2199 Schrenkiella parvula HOM05D005505 ORTHO05D006974 8.3e-33 146.0 102 68.6
Lj3A578G7 Lonicera japonica HOM05D005505 ORTHO05D006974 2.3e-30 137.9 92 73.9
Ca_29365_v3 Cicer arietinum L. HOM05D005505 ORTHO05D006974 1.7e-25 121.7 355 26.8
Haze_11577 Corylus avellana HOM05D005505 ORTHO05D006974 1.0e-22 112.5 118 51.7
Actinidia34626 Actinidia chinensis HOM05D005505 ORTHO05D006974 1.9e-16 91.7 89 55.1
Lj3A579T17 Lonicera japonica HOM05D005505 ORTHO05D006974 5.3e-11 73.6 60 65.0
CDE09G0201 Ceratophyllum demersum HOM05D000090 ORTHO05D001584 1.3e-09 68.9 49 73.5
AL3G39220 Arabidopsis lyrata HOM05D005505 ORTHO05D000101 4.2e-08 63.9 38 68.4
Lj3A565T20 Lonicera japonica HOM05D005505 ORTHO05D006974 1.6e-07 62.0 64 59.4
Gohir.A04G131500 Gossypium hirsutum HOM05D000686 ORTHO05D000512 7.9e-07 59.7 273 24.5
Sed0022161 Sechium edule HOM05D000686 ORTHO05D000512 1.8e-06 58.5 272 26.1
AUR62013012 Chenopodium quinoa HOM05D000686 ORTHO05D000512 3.9e-06 57.4 277 26.0
MELO3C013343.2 Cucumis melo HOM05D000686 ORTHO05D000512 5.1e-06 57.0 277 26.4
CsaV3_7G001130 Cucumis sativus L. HOM05D000686 ORTHO05D000512 5.1e-06 57.0 277 24.5
ClCG02G003970 Citrullus lanatus HOM05D000686 ORTHO05D000512 6.7e-06 56.6 270 26.7


User provided reference genes

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