Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0787G077 Amborella trichopoda HOM05D007706 ORTHO05D009593 4.3e-142 508.4 353 100.0
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 9.8e-30 135.2 286 39.9
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 6.4e-29 132.5 292 40.8
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 5.0e-26 122.9 270 36.7
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 8.9e-23 112.1 300 37.0
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.0e-22 110.9 302 35.8
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 5.4e-20 102.8 295 32.2
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 5.4e-20 102.8 303 37.3
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 1.3e-18 98.2 283 34.6
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 1.3e-18 98.2 298 32.6
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 3.9e-18 96.7 286 31.8
Manes.03G158500 Manihot esculenta HOM05D006910 ORTHO05D008937 8.6e-18 95.5 274 32.8
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 1.9e-17 94.4 311 33.8
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 2.5e-17 94.0 291 30.2
Sabra08G0131500 Salix brachista HOM05D006910 ORTHO05D008937 5.6e-17 92.8 313 31.3
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.2e-16 91.7 225 33.3
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 1.2e-16 91.7 301 31.6
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 8.1e-16 89.0 292 31.2
Ciclev10004771m.g Citrus clementina HOM05D006910 ORTHO05D008937 1.4e-15 88.2 289 33.6
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 2.4e-15 87.4 298 30.2
MD16G1226800 Malus domestica HOM05D006910 ORTHO05D008937 4.0e-15 86.7 289 31.5
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 5.2e-15 86.3 312 30.1
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 6.8e-15 85.9 291 32.6
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 6.8e-15 85.9 316 35.4
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 8.9e-15 85.5 296 30.1
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 1.2e-14 85.1 289 32.2
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 1.2e-14 85.1 312 34.6
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 1.5e-14 84.7 284 29.6
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 2.0e-14 84.3 343 29.4
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 2.0e-14 84.3 292 36.0
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 2.6e-14 84.0 306 33.3
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 2.6e-14 84.0 312 31.1
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 3.4e-14 83.6 303 30.7
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 4.4e-14 83.2 291 32.6
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 5.8e-14 82.8 304 32.2
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 5.8e-14 82.8 298 29.9
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 9.9e-14 82.0 304 29.3
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 1.3e-13 81.6 294 36.7
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 1.3e-13 81.6 308 33.1
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 1.3e-13 81.6 312 30.4
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.7e-13 81.3 307 28.3
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 2.2e-13 80.9 300 36.3
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 2.2e-13 80.9 287 30.0
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 4.9e-13 79.7 297 31.0
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 4.9e-13 79.7 284 30.3
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 6.4e-13 79.3 305 30.8
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 6.4e-13 79.3 295 29.8
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 8.4e-13 79.0 320 30.9
Thecc.04G265400 Theobroma cacao HOM05D006910 ORTHO05D008937 1.1e-12 78.6 180 31.7
CANSAT78G1020 Cannabis sativa HOM05D006910 ORTHO05D008937 1.4e-12 78.2 267 32.2
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 1.9e-12 77.8 296 30.1
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 1.9e-12 77.8 306 30.4
RcHm_v2.0_Chr4g0395481 Rosa chinensis HOM05D006910 ORTHO05D008937 1.9e-12 77.8 189 35.4
CAN.G638.37 Capsicum annuum HOM05D006910 ORTHO05D008937 2.4e-12 77.4 145 40.7
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 2.4e-12 77.4 290 35.2
FAN22G1859 Fragaria x ananassa HOM05D006910 ORTHO05D008937 2.4e-12 77.4 185 36.2
FAN12G3461 Fragaria x ananassa HOM05D006910 ORTHO05D008937 4.1e-12 76.6 176 37.5
TWI53G1612 Tripterygium wilfordii HOM05D006910 ORTHO05D008937 5.4e-12 76.3 178 33.7
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 7.1e-12 75.9 282 34.4
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 1.6e-11 74.7 312 31.7
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 1.6e-11 74.7 293 29.0
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 1.6e-11 74.7 293 33.1
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 2.1e-11 74.3 297 31.6
FvH4_4g04670 Fragaria vesca HOM05D006910 ORTHO05D008937 2.7e-11 73.9 176 36.9
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 3.5e-11 73.6 300 29.3
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 4.6e-11 73.2 315 34.9
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 4.6e-11 73.2 287 32.1
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 6.0e-11 72.8 300 35.7
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 6.0e-11 72.8 187 33.7
PGSC0003DMG400013458 Solanum tuberosum HOM05D006910 ORTHO05D008937 6.0e-11 72.8 184 34.2
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 1.0e-10 72.0 309 29.8
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 1.0e-10 72.0 290 33.8
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.0e-10 72.0 290 33.8
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 1.0e-10 72.0 299 30.8
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 1.3e-10 71.6 305 30.2
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 1.3e-10 71.6 307 31.3
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 1.7e-10 71.2 290 31.0
FAN17G1396 Fragaria x ananassa HOM05D006910 ORTHO05D008937 2.3e-10 70.9 181 34.8
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 2.3e-10 70.9 284 31.0
Sc13g0003110 Simmondsia chinensis HOM05D006910 ORTHO05D008937 2.3e-10 70.9 145 38.6
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 3.0e-10 70.5 324 28.7
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 3.0e-10 70.5 300 28.7
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 3.9e-10 70.1 320 34.4
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 3.9e-10 70.1 311 28.3
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 3.9e-10 70.1 292 28.4
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 5.1e-10 69.7 296 30.7
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 8.7e-10 68.9 290 29.7
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 8.7e-10 68.9 302 34.8
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 8.7e-10 68.9 290 31.7
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 1.5e-09 68.2 294 33.0
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 1.5e-09 68.2 221 28.5
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 1.5e-09 68.2 221 28.5
Phvul.011G133545 Phaseolus vulgaris HOM05D006910 ORTHO05D008937 1.9e-09 67.8 189 29.6
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 1.9e-09 67.8 294 29.9
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 2.5e-09 67.4 318 33.6
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 2.5e-09 67.4 137 36.5
TAR622G1049 Trochodendron aralioides HOM05D027966 ORTHO05D025782 2.5e-09 67.4 272 28.3
BraA10t42564Z Brassica rapa HOM05D006910 ORTHO05D008937 3.3e-09 67.0 132 37.1
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 3.3e-09 67.0 315 31.1
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 3.3e-09 67.0 300 29.7
A10p02950 Brassica napus HOM05D006910 ORTHO05D008937 4.3e-09 66.6 132 37.1
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 5.6e-09 66.2 85 44.7
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 7.3e-09 65.9 246 31.7
Cc03_g06380 Coffea canephora HOM05D006910 ORTHO05D008937 9.6e-09 65.5 260 29.2
Nn4g24887 Nelumbo nucifera HOM05D027966 ORTHO05D025782 9.6e-09 65.5 285 26.7
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 9.6e-09 65.5 267 32.2
Solyc09g090930.3 Solanum lycopersicum HOM05D006910 ORTHO05D008937 9.6e-09 65.5 170 32.9
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 1.2e-08 65.1 296 30.4
VMungo0720G1174 Vigna mungo HOM05D006910 ORTHO05D008937 1.6e-08 64.7 194 28.9
MSTRG.4175 Avicennia marina HOM05D006910 ORTHO05D008937 2.1e-08 64.3 185 28.6
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 2.8e-08 63.9 296 28.7
Actinidia39932 Actinidia chinensis HOM05D006910 ORTHO05D008937 4.7e-08 63.2 53 50.9
C05p02700 Brassica napus HOM05D006910 ORTHO05D008937 4.7e-08 63.2 132 35.6
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 4.7e-08 63.2 284 32.0
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 4.7e-08 63.2 307 30.9
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 4.7e-08 63.2 315 26.7
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 4.7e-08 63.2 299 29.1
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 6.2e-08 62.8 294 27.9
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 8.1e-08 62.4 210 29.0
AT1G04530 Arabidopsis thaliana HOM05D006910 ORTHO05D008937 1.1e-07 62.0 147 35.4
Glyma.20G199800 Glycine max HOM05D006910 ORTHO05D008937 1.1e-07 62.0 191 28.8
Lj6C621T3 Lonicera japonica HOM05D006910 ORTHO05D008937 1.1e-07 62.0 74 50.0
Lj5g0027299 Lotus japonicus HOM05D006910 ORTHO05D008937 1.1e-07 62.0 201 29.4
MBI02_g19811_MAGBIO Magnolia biondii HOM05D006910 ORTHO05D025782 1.1e-07 62.0 297 27.3
PSO170G0940 Papaver somniferum HOM05D027966 ORTHO05D025782 1.1e-07 62.0 80 41.2
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.4e-07 61.6 296 28.0
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 1.8e-07 61.2 297 27.3
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.8e-07 61.2 300 31.0
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.4e-07 60.8 75 45.3
PGSC0003DMG400001551 Solanum tuberosum HOM05D006910 ORTHO05D008937 3.1e-07 60.5 109 38.5
Nitab4.5_0000592g0430 Nicotiana tabacum HOM05D006910 ORTHO05D008937 4.0e-07 60.1 182 32.4
PSO407G0040 Papaver somniferum HOM05D027966 ORTHO05D025782 4.0e-07 60.1 48 50.0
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 4.0e-07 60.1 301 28.2
Psat6g131280 Pisum sativum HOM05D006910 ORTHO05D008937 4.0e-07 60.1 189 34.4
PGR031G1691 Punica granatum HOM05D006910 ORTHO05D008937 4.0e-07 60.1 144 34.7
Medtr1g073230 Medicago truncatula HOM05D006910 ORTHO05D008937 6.9e-07 59.3 202 28.7
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 9.0e-07 58.9 308 34.1
BolC5t29051H Brassica oleracea HOM05D006910 ORTHO05D008937 1.2e-06 58.5 135 36.3
AL1G14180 Arabidopsis lyrata HOM05D006910 ORTHO05D008937 2.0e-06 57.8 150 34.7
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 2.6e-06 57.4 49 55.1
Oeu011215.1 Olea europaea HOM05D006910 ORTHO05D008937 2.6e-06 57.4 51 52.9
Aa31LG1G20340 Aethionema arabicum HOM05D006910 ORTHO05D008937 3.4e-06 57.0 144 35.4
QL05p029561 Quercus lobata HOM05D001903 ORTHO05D001847 4.4e-06 56.6 277 26.4
Nitab4.5_0006344g0050 Nicotiana tabacum HOM05D006910 ORTHO05D008937 5.8e-06 56.2 80 45.0
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 5.8e-06 56.2 70 40.0
CAN.G524.13 Capsicum annuum HOM05D006910 ORTHO05D008937 7.6e-06 55.8 73 43.8
Os04g0510600 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 7.6e-06 55.8 89 38.2


User provided reference genes

Program Settings