Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0782G192 Amborella trichopoda HOM05D003550 ORTHO05D004336 5.7e-132 474.2 226 100.0
Prupe.2G040800 Prunus persica HOM05D003550 ORTHO05D004336 2.8e-54 216.1 230 50.4
GSVIVG01036651001 Vitis vinifera HOM05D003550 ORTHO05D004336 1.1e-53 214.2 233 50.6
PGR031G1017 Punica granatum HOM05D003550 ORTHO05D004336 4.1e-53 212.2 227 53.3
HPP92_003596 Vanilla planifolia HOM05D003550 ORTHO05D004336 6.9e-53 211.5 266 45.9
FAN03G0411 Fragaria x ananassa HOM05D003550 ORTHO05D004336 9.0e-53 211.1 237 49.8
TAR369G1080 Trochodendron aralioides HOM05D003550 ORTHO05D004336 9.0e-53 211.1 246 48.0
TAR623G1672 Trochodendron aralioides HOM05D003550 ORTHO05D004336 1.2e-52 210.7 243 49.0
MD07G1048200 Malus domestica HOM05D003550 ORTHO05D004336 2.0e-52 209.9 230 48.3
FAN01G2608 Fragaria x ananassa HOM05D003550 ORTHO05D004336 2.6e-52 209.5 238 49.2
FAN10G1007 Fragaria x ananassa HOM05D003550 ORTHO05D004336 5.8e-52 208.4 238 50.0
Nn7g36747 Nelumbo nucifera HOM05D003550 ORTHO05D004336 7.6e-52 208.0 238 47.9
Peaxi162Scf00082g00122 Petunia axillaris HOM05D003550 ORTHO05D004336 1.3e-51 207.2 233 50.6
CDE09G1076 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 1.7e-51 206.8 237 48.5
Dinv44694 Davidia involucrata HOM05D003550 ORTHO05D004336 2.9e-51 206.1 237 47.7
Ca_12963_v3 Cicer arietinum L. HOM05D003550 ORTHO05D004336 3.8e-51 205.7 232 50.9
TWI15G0170 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 5.0e-51 205.3 235 47.2
CiPaw.14G008600 Carya illinoinensis HOM05D003550 ORTHO05D004336 6.5e-51 204.9 233 48.9
FvH4_7g03470 Fragaria vesca HOM05D003550 ORTHO05D004336 6.5e-51 204.9 238 48.7
FAN06G0346 Fragaria x ananassa HOM05D003550 ORTHO05D004336 6.5e-51 204.9 238 48.7
SEGI_17265 Sequoiadendron giganteum HOM05D003550 ORTHO05D004336 8.4e-51 204.5 231 44.2
BraA03t09941Z Brassica rapa HOM05D003550 ORTHO05D004336 1.1e-50 204.1 221 47.1
Hund13381 Selenicereus undatus HOM05D003550 ORTHO05D004336 1.1e-50 204.1 215 51.2
A03p06030 Brassica napus HOM05D003550 ORTHO05D004336 1.4e-50 203.8 221 47.1
MD02G1282000 Malus domestica HOM05D003550 ORTHO05D004336 1.9e-50 203.4 230 48.7
SGA_v2.0_scaffold232G43498 Striga asiatica HOM05D003550 ORTHO05D004336 1.9e-50 203.4 254 47.2
Mapoly0002s0111 Marchantia polymorpha HOM05D003550 ORTHO05D004336 2.5e-50 203.0 235 47.2
Zm00001eb350870 Zea mays HOM05D003550 ORTHO05D004336 2.5e-50 203.0 231 50.6
Actinidia06226 Actinidia chinensis HOM05D003550 ORTHO05D004336 3.2e-50 202.6 228 48.7
Lj3g0007376 Lotus japonicus HOM05D003550 ORTHO05D004336 3.2e-50 202.6 243 47.3
Actinidia10150 Actinidia chinensis HOM05D003550 ORTHO05D004336 5.5e-50 201.8 229 48.5
C03p07080 Brassica napus HOM05D003550 ORTHO05D004336 7.2e-50 201.4 221 47.1
BolC3t13205H Brassica oleracea HOM05D003550 ORTHO05D004336 7.2e-50 201.4 221 47.1
Lalb_Chr01g0015821 Lupinus albus HOM05D003550 ORTHO05D004336 7.2e-50 201.4 233 47.2
TWI38G1858 Tripterygium wilfordii HOM05D003550 ORTHO05D004336 7.2e-50 201.4 235 46.8
CsaV3_5G036850 Cucumis sativus L. HOM05D003550 ORTHO05D004336 9.3e-50 201.1 237 48.1
Aa31LG11G7760 Aethionema arabicum HOM05D003550 ORTHO05D004336 1.2e-49 200.7 232 47.8
CARHR199910 Cardamine hirsuta HOM05D003550 ORTHO05D004336 1.2e-49 200.7 232 46.6
Rhsim07G0068000 Rhododendron simsii HOM05D003550 ORTHO05D004336 1.2e-49 200.7 248 48.4
Sc10g0004490 Simmondsia chinensis HOM05D003550 ORTHO05D004336 1.6e-49 200.3 238 48.3
CAN.G1045.18 Capsicum annuum HOM05D003550 ORTHO05D004336 2.1e-49 199.9 231 48.5
AT5G13530 Arabidopsis thaliana HOM05D003550 ORTHO05D004336 2.7e-49 199.5 232 45.3
Manes.04G157700 Manihot esculenta HOM05D003550 ORTHO05D004336 2.7e-49 199.5 230 50.9
AL6G24150 Arabidopsis lyrata HOM05D003550 ORTHO05D004336 3.5e-49 199.1 231 45.5
RcHm_v2.0_Chr1g0325801 Rosa chinensis HOM05D003550 ORTHO05D004336 3.5e-49 199.1 241 47.3
Aqoxy1G00373 Aquilegia oxysepala HOM05D003550 ORTHO05D004336 4.6e-49 198.7 257 44.7
Dinv32016 Davidia involucrata HOM05D003550 ORTHO05D004336 6.1e-49 198.4 237 46.0
Medtr3g014090 Medicago truncatula HOM05D003550 ORTHO05D004336 6.1e-49 198.4 238 47.9
Potri.001G029600 Populus trichocarpa HOM05D003550 ORTHO05D004336 6.1e-49 198.4 231 48.5
Zm00001eb287260 Zea mays HOM05D003550 ORTHO05D004336 6.1e-49 198.4 230 50.4
CDE02G3571 Ceratophyllum demersum HOM05D003550 ORTHO05D004336 7.9e-49 198.0 236 47.0
HPP92_001023 Vanilla planifolia HOM05D003550 ORTHO05D004336 7.9e-49 198.0 265 43.8
MELO3C012481.2 Cucumis melo HOM05D003550 ORTHO05D004336 1.0e-48 197.6 237 47.7
Sp6g30490 Schrenkiella parvula HOM05D003550 ORTHO05D004336 1.0e-48 197.6 232 45.3
arahy.Tifrunner.gnm1.ann1.LJ5CCV Arachis hypogaea HOM05D003550 ORTHO05D004336 1.3e-48 197.2 247 44.5
arahy.Tifrunner.gnm1.ann1.VF4M4N Arachis hypogaea HOM05D003550 ORTHO05D004336 1.3e-48 197.2 244 44.7
SMO271G0056 Selaginella moellendorffii HOM05D003550 ORTHO05D004336 1.3e-48 197.2 232 47.0
QL04p017759 Quercus lobata HOM05D003550 ORTHO05D004336 1.8e-48 196.8 239 46.4
AUR62044058 Chenopodium quinoa HOM05D003550 ORTHO05D004336 2.3e-48 196.4 229 48.0
DCAR_001913 Daucus carota HOM05D003550 ORTHO05D004336 2.3e-48 196.4 215 50.2
Migut.N01852 Erythranthe guttata HOM05D003550 ORTHO05D004336 2.3e-48 196.4 252 46.4
Sopen01g040220 Solanum pennellii HOM05D003550 ORTHO05D004336 2.3e-48 196.4 233 49.4
Carub.0006s1169 Capsella rubella HOM05D003550 ORTHO05D004336 5.1e-48 195.3 233 45.1
CSS0018240 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 1.1e-47 194.1 242 45.5
CSS0021926 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 1.1e-47 194.1 242 45.5
CANSAT56G1944 Cannabis sativa HOM05D003550 ORTHO05D004336 1.1e-47 194.1 246 46.7
Sabra01G0021200 Salix brachista HOM05D003550 ORTHO05D004336 1.1e-47 194.1 229 47.2
Cc00_g09560 Coffea canephora HOM05D003550 ORTHO05D004336 1.5e-47 193.7 242 45.5
Oeu013090.1 Olea europaea HOM05D003550 ORTHO05D004336 1.5e-47 193.7 222 49.1
Medtr0137s0080 Medicago truncatula HOM05D003550 ORTHO05D004336 1.9e-47 193.4 238 47.5
Sed0009251 Sechium edule HOM05D003550 ORTHO05D004336 3.3e-47 192.6 228 47.8
VMungo1080G0047 Vigna mungo HOM05D003550 ORTHO05D004336 4.3e-47 192.2 247 44.1
Solyc01g096490.3 Solanum lycopersicum HOM05D003550 ORTHO05D004336 9.7e-47 191.0 233 48.1
Thhalv10012422m.g Eutrema salsugineum HOM05D003550 ORTHO05D004336 1.3e-46 190.7 231 45.5
Cfa010939 Carpinus fangiana HOM05D003550 ORTHO05D004336 2.2e-46 189.9 241 44.8
Lalb_Chr04g0264171 Lupinus albus HOM05D003550 ORTHO05D004336 2.2e-46 189.9 220 47.7
Psat5g221640 Pisum sativum HOM05D003550 ORTHO05D004336 2.8e-46 189.5 243 44.4
Cpa.g.sc847.2 Carica papaya HOM05D003550 ORTHO05D004336 4.8e-46 188.7 234 45.3
PSO339G1124 Papaver somniferum HOM05D003550 ORTHO05D004336 4.8e-46 188.7 282 40.4
HanXRQChr15g0481051 Helianthus annuus HOM05D003550 ORTHO05D004336 6.3e-46 188.3 238 47.1
Lsat_1_v5_gn_7_31581 Lactuca sativa HOM05D003550 ORTHO05D004336 8.2e-46 188.0 224 46.0
MSTRG.28033 Avicennia marina HOM05D003550 ORTHO05D004336 1.1e-45 187.6 248 46.0
Glyma.11G157400 Glycine max HOM05D003550 ORTHO05D004336 1.1e-45 187.6 247 43.3
HanXRQChr04g0112901 Helianthus annuus HOM05D003550 ORTHO05D004336 1.1e-45 187.6 232 45.7
PSO384G0047 Papaver somniferum HOM05D003550 ORTHO05D004336 1.1e-45 187.6 286 40.6
MSTRG.5071 Avicennia marina HOM05D003550 ORTHO05D004336 1.4e-45 187.2 249 47.0
THA.LOC104819140 Tarenaya hassleriana HOM05D003550 ORTHO05D004336 2.4e-45 186.4 239 43.1
Nitab4.5_0005808g0030 Nicotiana tabacum HOM05D003550 ORTHO05D004336 3.1e-45 186.0 232 47.0
Phvul.005G025000 Phaseolus vulgaris HOM05D003550 ORTHO05D004336 3.1e-45 186.0 246 43.9
CiPaw.14G112000 Carya illinoinensis HOM05D003550 ORTHO05D004336 4.1e-45 185.7 227 48.0
Haze_03007 Corylus avellana HOM05D003550 ORTHO05D004336 5.3e-45 185.3 241 44.0
Nitab4.5_0003481g0090 Nicotiana tabacum HOM05D003550 ORTHO05D004336 1.2e-44 184.1 234 46.6
unitig_0.g2291 Utricularia gibba HOM05D003550 ORTHO05D004336 1.2e-44 184.1 242 45.0
vmacro04042 Vaccinium macrocarpon HOM05D003550 ORTHO05D004336 1.2e-44 184.1 220 46.4
CSS0027876 Camellia sinensis var. sinensis HOM05D003550 ORTHO05D004336 4.5e-44 182.2 227 47.6
Thecc.10G149700 Theobroma cacao HOM05D003550 ORTHO05D004336 4.5e-44 182.2 254 44.1
Os05g0392050 Oryza sativa ssp. japonica HOM05D003550 ORTHO05D004336 7.7e-44 181.4 243 46.1
Ciclev10000023m.g Citrus clementina HOM05D003550 ORTHO05D004336 3.8e-43 179.1 255 42.7
Glyma.04G134700 Glycine max HOM05D003550 ORTHO05D004336 5.0e-43 178.7 252 41.7
Gohir.A05G399700 Gossypium hirsutum HOM05D003550 ORTHO05D004336 5.0e-43 178.7 257 41.2
Duzib114G0877 Durio zibethinus HOM05D003550 ORTHO05D004336 1.1e-42 177.6 256 43.4
Glyma.13G195200 Glycine max HOM05D003550 ORTHO05D004336 1.1e-42 177.6 218 48.6
Gohir.D04G016100 Gossypium hirsutum HOM05D003550 ORTHO05D004336 2.5e-42 176.4 257 40.9
Gorai.012G018700 Gossypium raimondii HOM05D003550 ORTHO05D004336 2.5e-42 176.4 257 40.9
EL10Ac2g02773 Beta vulgaris HOM05D003550 ORTHO05D004336 7.2e-42 174.9 238 43.3
Rhsim13G0208400 Rhododendron simsii HOM05D003550 ORTHO05D004336 2.1e-41 173.3 224 46.0
SHI04015 Sapria himalayana HOM05D003550 ORTHO05D000023 2.1e-41 173.3 232 44.8
Duzib106G1351 Durio zibethinus HOM05D003550 ORTHO05D004336 2.7e-41 172.9 253 41.1
Gorai.011G216900 Gossypium raimondii HOM05D003550 ORTHO05D004336 1.4e-40 170.6 260 43.1
Gohir.D10G193900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 2.3e-40 169.9 258 41.9
ClCG02G022810 Citrullus lanatus HOM05D003550 ORTHO05D004336 3.0e-40 169.5 225 44.0
Gohir.A10G186900 Gossypium hirsutum HOM05D003550 ORTHO05D004336 5.1e-40 168.7 260 42.7
Lj9A657G27 Lonicera japonica HOM05D003550 ORTHO05D004336 5.1e-40 168.7 209 45.5
MELO3C014558.2 Cucumis melo HOM05D003550 ORTHO05D004336 1.1e-39 167.5 227 42.7
CsaV3_6G038940 Cucumis sativus L. HOM05D003550 ORTHO05D004336 1.1e-39 167.5 227 42.7
Sed0016122 Sechium edule HOM05D003550 ORTHO05D004336 2.8e-38 162.9 218 42.7
Haze_23247 Corylus avellana HOM05D003550 ORTHO05D004336 3.1e-37 159.5 215 44.7
Cfa009883 Carpinus fangiana HOM05D003550 ORTHO05D004336 4.1e-37 159.1 216 44.4
CBR_g16035 Chara braunii HOM05D003550 ORTHO05D004336 4.1e-37 159.1 269 35.3
Atru.chr12.1267 Acer truncatum HOM05D003550 ORTHO05D004336 1.5e-36 157.1 260 36.9
ATR0719G001 Amborella trichopoda HOM05D003550 ORTHO05D004336 5.9e-36 155.2 85 82.4
QL01p016949 Quercus lobata HOM05D003550 ORTHO05D004336 1.0e-35 154.5 214 42.1
AUR62032634 Chenopodium quinoa HOM05D003550 ORTHO05D004336 5.5e-34 148.7 205 44.4
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 1.2e-33 147.5 195 45.1
ECA236G1978 Erigeron canadensis HOM05D003550 ORTHO05D004336 2.7e-33 146.4 203 44.8
ATR0721G162 Amborella trichopoda HOM05D003550 ORTHO05D004336 7.4e-31 138.3 75 84.0
Sabra16G0169200 Salix brachista HOM05D003550 ORTHO05D004336 9.7e-31 137.9 225 40.9
BcaB01g05352 Brassica carinata HOM05D003550 ORTHO05D004336 1.1e-29 134.4 227 39.6
Potri.001G274900 Populus trichocarpa HOM05D003550 ORTHO05D004336 3.1e-29 132.9 224 38.8
BolC2t06570H Brassica oleracea HOM05D003550 ORTHO05D004336 3.8e-27 125.9 218 36.2
AUR62026885 Chenopodium quinoa HOM05D003550 ORTHO05D004336 2.8e-22 109.8 142 42.3
TPR.G1404 Trifolium pratense HOM05D003550 ORTHO05D004336 2.1e-17 93.6 91 53.8
CSS0028124 Camellia sinensis var. sinensis HOM05D031701 ORTHO05D004336 2.9e-11 73.2 110 37.3
CBR_g21745 Chara braunii HOM05D003550 ORTHO05D004336 4.2e-10 69.3 222 29.3
Actinidia06972 Actinidia chinensis HOM05D003550 ORTHO05D004336 3.6e-09 66.2 202 29.7
Lsat_1_v5_gn_5_49361 Lactuca sativa HOM05D000108 ORTHO05D001378 9.8e-07 58.2 108 38.0
Ca_13032_v3 Cicer arietinum L. HOM05D002526 ORTHO05D004039 3.7e-06 56.2 137 31.4


User provided reference genes

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