Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0782G186 Amborella trichopoda HOM05D002984 ORTHO05D003561 1.2e-36 156.0 77 100.0
ATR0681G393 Amborella trichopoda HOM05D002984 ORTHO05D003561 3.0e-32 141.4 69 100.0
CsaV3_5G034050 Cucumis sativus L. HOM05D002984 ORTHO05D003561 5.7e-15 84.0 70 64.3
vmacro10537 Vaccinium macrocarpon HOM05D002984 ORTHO05D003561 1.3e-14 82.8 70 60.0
GSVIVG01011939001 Vitis vinifera HOM05D002984 ORTHO05D003561 1.6e-14 82.4 70 58.6
MELO3C012221.2 Cucumis melo HOM05D002984 ORTHO05D003561 2.2e-14 82.0 70 62.9
Sed0009737 Sechium edule HOM05D002984 ORTHO05D003561 2.2e-14 82.0 70 61.4
ClCG05G022960 Citrullus lanatus HOM05D002984 ORTHO05D000550 3.7e-14 81.3 70 62.9
Migut.E00313 Erythranthe guttata HOM05D002984 ORTHO05D003561 1.1e-13 79.7 70 51.4
Potri.008G117700 Populus trichocarpa HOM05D002984 ORTHO05D003561 1.1e-13 79.7 70 58.6
Manes.14G098600 Manihot esculenta HOM05D002984 ORTHO05D003561 1.8e-13 79.0 70 54.3
Aqoxy3G00352 Aquilegia oxysepala HOM05D002984 ORTHO05D003561 2.4e-13 78.6 70 54.3
MD16G1046800 Malus domestica HOM05D002984 ORTHO05D003561 3.1e-13 78.2 70 57.1
MD16G1047200 Malus domestica HOM05D002984 ORTHO05D003561 4.1e-13 77.8 70 57.1
TWI31G1103 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 4.1e-13 77.8 70 52.9
HanXRQChr16g0529571 Helianthus annuus HOM05D002984 ORTHO05D003561 6.9e-13 77.0 75 56.0
Lj6C764G13 Lonicera japonica HOM05D002984 ORTHO05D003561 6.9e-13 77.0 71 56.3
Prupe.1G306600 Prunus persica HOM05D002984 ORTHO05D003561 9.1e-13 76.6 70 55.7
RcHm_v2.0_Chr4g0435671 Rosa chinensis HOM05D002984 ORTHO05D003561 9.1e-13 76.6 70 55.7
Ciclev10030710m.g Citrus clementina HOM05D002984 ORTHO05D003561 1.2e-12 76.3 70 54.3
FvH4_4g27961 Fragaria vesca HOM05D002984 ORTHO05D003561 1.2e-12 76.3 70 55.7
FAN12G2547 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.2e-12 76.3 70 55.7
TWI79G1384 Tripterygium wilfordii HOM05D002984 ORTHO05D003561 1.2e-12 76.3 70 52.9
Haze_17450 Corylus avellana HOM05D002984 ORTHO05D003561 1.5e-12 75.9 70 55.7
Sabra10G0097800 Salix brachista HOM05D002984 ORTHO05D003561 1.5e-12 75.9 70 52.9
Hma1.2p1_0030F.1_g018360 Hydrangea macrophylla HOM05D002984 ORTHO05D003561 2.0e-12 75.5 70 54.3
Sabra02G0035000 Salix brachista HOM05D002984 ORTHO05D003561 2.0e-12 75.5 70 55.7
Sabra08G0089300 Salix brachista HOM05D002984 ORTHO05D003561 2.0e-12 75.5 70 55.7
FAN22G1846 Fragaria x ananassa HOM05D002984 ORTHO05D003561 4.5e-12 74.3 70 55.7
COL.COLO4_07881 Corchorus olitorius HOM05D002984 ORTHO05D003561 7.7e-12 73.6 70 50.0
Potri.010G128600 Populus trichocarpa HOM05D002984 ORTHO05D003561 7.7e-12 73.6 70 52.9
CiPaw.16G003700 Carya illinoinensis HOM05D002984 ORTHO05D003561 1.0e-11 73.2 71 49.3
TAR622G0040 Trochodendron aralioides HOM05D002984 ORTHO05D003561 1.0e-11 73.2 70 55.7
CSS0018296 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 1.3e-11 72.8 64 57.8
CSS0023076 Camellia sinensis var. sinensis HOM05D002984 ORTHO05D003561 1.3e-11 72.8 64 57.8
MBI01_g09372_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 1.7e-11 72.4 70 55.7
Thecc.02G359700 Theobroma cacao HOM05D002984 ORTHO05D003561 2.2e-11 72.0 70 50.0
PSO017G4771 Papaver somniferum HOM05D002984 ORTHO05D003561 2.9e-11 71.6 69 58.0
PSO478G2088 Papaver somniferum HOM05D002984 ORTHO05D003561 2.9e-11 71.6 69 58.0
CiPaw.16G003900 Carya illinoinensis HOM05D002984 ORTHO05D003561 3.8e-11 71.2 71 49.3
Duzib251G0734 Durio zibethinus HOM05D002984 ORTHO05D003561 3.8e-11 71.2 70 52.9
Atru.chr11.1335 Acer truncatum HOM05D002984 ORTHO05D003561 5.0e-11 70.9 70 52.9
CANSAT64G2157 Cannabis sativa HOM05D002984 ORTHO05D003561 6.5e-11 70.5 71 52.1
Cc11_g10490 Coffea canephora HOM05D002984 ORTHO05D003561 6.5e-11 70.5 70 52.9
Rhsim09G0111200 Rhododendron simsii HOM05D002984 ORTHO05D000550 1.1e-10 69.7 63 57.1
C03p72840 Brassica napus HOM05D002984 ORTHO05D003561 1.4e-10 69.3 71 49.3
Nn4g23754 Nelumbo nucifera HOM05D002984 ORTHO05D003561 1.4e-10 69.3 57 59.6
QL01p044747 Quercus lobata HOM05D002984 ORTHO05D003561 1.4e-10 69.3 70 52.9
Atru.chr11.1338 Acer truncatum HOM05D002984 ORTHO05D003561 1.9e-10 68.9 70 50.0
Dinv21122 Davidia involucrata HOM05D002984 ORTHO05D003561 1.9e-10 68.9 70 48.6
Nitab4.5_0000597g0030 Nicotiana tabacum HOM05D002984 ORTHO05D003561 4.2e-10 67.8 64 54.7
ECA234G4415 Erigeron canadensis HOM05D002984 ORTHO05D003561 5.5e-10 67.4 70 55.7
Cpa.g.sc1.211 Carica papaya HOM05D002984 ORTHO05D003561 7.2e-10 67.0 70 54.3
Oeu010774.1 Olea europaea HOM05D002984 ORTHO05D003561 7.2e-10 67.0 63 54.0
Eucgr.D01061 Eucalyptus grandis HOM05D002984 ORTHO05D003561 9.4e-10 66.6 70 45.7
SGA_v2.0_scaffold124G33581 Striga asiatica HOM05D002984 ORTHO05D003561 9.4e-10 66.6 66 51.5
BcaC01g01711 Brassica carinata HOM05D002984 ORTHO05D003561 1.2e-09 66.2 71 47.9
BolC3t19582H Brassica oleracea HOM05D002984 ORTHO05D003561 1.2e-09 66.2 71 47.9
Lsat_1_v5_gn_4_19001 Lactuca sativa HOM05D002984 ORTHO05D003561 1.2e-09 66.2 57 59.6
Lj6A762T42 Lonicera japonica HOM05D002984 ORTHO05D003561 1.6e-09 65.9 62 56.5
PGR142G0084 Punica granatum HOM05D002984 ORTHO05D003561 1.6e-09 65.9 64 48.4
Ca_19808_v3 Cicer arietinum L. HOM05D002984 ORTHO05D003561 2.1e-09 65.5 70 52.9
Phvul.003G028300 Phaseolus vulgaris HOM05D002984 ORTHO05D003561 2.1e-09 65.5 70 51.4
PGR142G1725 Punica granatum HOM05D002984 ORTHO05D003561 2.1e-09 65.5 70 48.6
SHI14503 Sapria himalayana HOM05D002984 ORTHO05D003561 2.7e-09 65.1 70 51.4
Glyma.02G098300 Glycine max HOM05D002984 ORTHO05D003561 3.6e-09 64.7 69 52.2
arahy.Tifrunner.gnm1.ann1.IQF6NS Arachis hypogaea HOM05D002984 ORTHO05D003561 6.1e-09 63.9 71 49.3
arahy.Tifrunner.gnm1.ann1.X8TPQJ Arachis hypogaea HOM05D002984 ORTHO05D003561 7.9e-09 63.5 71 49.3
A08p27060 Brassica napus HOM05D002984 ORTHO05D003561 1.0e-08 63.2 71 49.3
BraA08t34651Z Brassica rapa HOM05D002984 ORTHO05D003561 1.0e-08 63.2 71 49.3
Nitab4.5_0000489g0040 Nicotiana tabacum HOM05D002984 ORTHO05D003561 1.8e-08 62.4 64 51.6
Thhalv10006778m.g Eutrema salsugineum HOM05D002984 ORTHO05D003561 2.3e-08 62.0 71 50.7
Gohir.D02G115800 Gossypium hirsutum HOM05D002984 ORTHO05D003561 3.0e-08 61.6 70 44.3
Gorai.005G138200 Gossypium raimondii HOM05D002984 ORTHO05D003561 3.0e-08 61.6 70 44.3
Lj2g0026621 Lotus japonicus HOM05D002984 ORTHO05D003561 3.0e-08 61.6 70 48.6
THA.LOC104808226 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 3.0e-08 61.6 70 48.6
CAN.G2.31 Capsicum annuum HOM05D002984 ORTHO05D003561 3.9e-08 61.2 63 52.4
Gohir.A13G053428 Gossypium hirsutum HOM05D002984 ORTHO05D003561 3.9e-08 61.2 68 45.6
Medtr5g054680 Medicago truncatula HOM05D002984 ORTHO05D003561 3.9e-08 61.2 70 50.0
Lsat_1_v5_gn_4_19021 Lactuca sativa HOM05D002984 ORTHO05D003561 5.1e-08 60.8 58 55.2
Gohir.D13G070100 Gossypium hirsutum HOM05D002984 ORTHO05D003561 8.8e-08 60.1 68 45.6
Lalb_Chr17g0341951 Lupinus albus HOM05D002984 ORTHO05D003561 8.8e-08 60.1 64 50.0
VMungo1215G2122 Vigna mungo HOM05D002984 ORTHO05D003561 8.8e-08 60.1 70 50.0
Carub.0001s2494 Capsella rubella HOM05D002984 ORTHO05D003561 1.1e-07 59.7 71 49.3
FAN18G2442 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.1e-07 59.7 86 44.2
FAN18G3612 Fragaria x ananassa HOM05D002984 ORTHO05D003561 1.1e-07 59.7 86 44.2
Lalb_Chr10g0099841 Lupinus albus HOM05D002984 ORTHO05D003561 1.1e-07 59.7 71 52.1
Sp1g22670 Schrenkiella parvula HOM05D002984 ORTHO05D003561 1.1e-07 59.7 71 49.3
Gorai.013G080300 Gossypium raimondii HOM05D002984 ORTHO05D003561 1.5e-07 59.3 68 45.6
Peaxi162Scf00004g01518 Petunia axillaris HOM05D002984 ORTHO05D003561 1.5e-07 59.3 70 47.1
TPR.G38317 Trifolium pratense HOM05D002984 ORTHO05D003561 1.5e-07 59.3 69 47.8
Gohir.A03G097900 Gossypium hirsutum HOM05D002984 ORTHO05D003561 2.0e-07 58.9 70 44.3
HPP92_024319 Vanilla planifolia HOM05D002984 ORTHO05D003561 2.0e-07 58.9 66 48.5
Oeu041887.1 Olea europaea HOM05D002984 ORTHO05D003561 2.6e-07 58.5 79 40.5
CARHR025920 Cardamine hirsuta HOM05D002984 ORTHO05D003561 3.3e-07 58.2 71 49.3
FvH4_5g05460 Fragaria vesca HOM05D002984 ORTHO05D003561 3.3e-07 58.2 86 43.0
Solyc12g070100.2 Solanum lycopersicum HOM05D002984 ORTHO05D003561 4.4e-07 57.8 56 50.0
Sopen12g027160 Solanum pennellii HOM05D002984 ORTHO05D003561 5.7e-07 57.4 56 50.0
SGA_v2.0_scaffold14G06838 Striga asiatica HOM05D002984 ORTHO05D003561 5.7e-07 57.4 69 40.6
AL1G39760 Arabidopsis lyrata HOM05D002984 ORTHO05D003561 9.7e-07 56.6 71 47.9
DCAR_026720 Daucus carota HOM05D002984 ORTHO05D003561 9.7e-07 56.6 54 51.9
Os09g0306700 Oryza sativa ssp. japonica HOM05D002984 ORTHO05D003561 9.7e-07 56.6 80 42.5
MBI01_g32855_MAGBIO Magnolia biondii HOM05D002984 ORTHO05D003561 1.7e-06 55.8 50 56.0
Glyma.01G086201 Glycine max HOM05D002984 ORTHO05D003561 2.2e-06 55.5 69 47.8
FAN13G2905 Fragaria x ananassa HOM05D002984 ORTHO05D003561 4.8e-06 54.3 84 42.9
Lj2g0024103 Lotus japonicus HOM05D002984 ORTHO05D003561 4.8e-06 54.3 71 47.9
AT1G25540 Arabidopsis thaliana HOM05D002984 ORTHO05D003561 6.3e-06 53.9 71 46.5
Lsat_1_v5_gn_3_60001 Lactuca sativa HOM05D002984 ORTHO05D003561 6.3e-06 53.9 67 47.8
THA.LOC104821957 Tarenaya hassleriana HOM05D002984 ORTHO05D003561 6.3e-06 53.9 70 42.9
Zm00001eb097890 Zea mays HOM05D002984 ORTHO05D003561 6.3e-06 53.9 69 44.9


User provided reference genes

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