Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 2.2e-263 911.8 459 100.0
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 2.8e-101 373.2 468 48.1
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 9.9e-99 364.8 463 47.7
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 4.9e-98 362.5 463 47.3
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 8.4e-98 361.7 469 47.5
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 6.7e-95 352.1 449 47.2
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 2.5e-94 350.1 493 44.8
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 3.3e-94 349.7 444 45.7
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 9.6e-94 348.2 448 45.1
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.6e-93 347.4 463 43.8
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 6.2e-93 345.5 450 47.3
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.4e-92 344.4 464 46.3
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 2.0e-91 340.5 444 44.8
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.0e-91 340.5 475 45.5
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 2.6e-91 340.1 449 44.5
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 3.4e-91 339.7 448 46.2
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 4.5e-91 339.3 473 45.7
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 4.5e-91 339.3 453 46.1
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 6.4e-90 335.5 468 44.2
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 3.2e-89 333.2 485 44.5
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 5.5e-89 332.4 469 46.3
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 7.1e-89 332.0 476 45.0
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 4.6e-88 329.3 474 43.5
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 4.6e-88 329.3 457 44.4
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 6.0e-88 328.9 480 45.6
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.9e-88 328.6 470 43.6
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 1.8e-87 327.4 477 43.6
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.8e-87 327.4 449 43.4
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 1.8e-87 327.4 449 43.4
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 3.0e-87 326.6 469 43.9
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 6.7e-87 325.5 437 46.2
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 1.9e-86 323.9 459 42.9
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 4.3e-86 322.8 454 44.7
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 4.3e-86 322.8 480 43.1
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 8.2e-85 318.5 459 44.0
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 1.5e-83 314.3 448 41.1
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 1.5e-83 314.3 444 44.8
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 1.5e-83 314.3 458 42.6
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 2.6e-83 313.5 473 43.3
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 3.8e-82 309.7 451 41.2
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 4.9e-82 309.3 461 41.2
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 9.3e-81 305.1 452 43.1
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.2e-80 304.7 452 40.3
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 2.1e-80 303.9 460 42.4
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 1.0e-79 301.6 436 42.9
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.8e-79 300.8 436 40.1
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.5e-78 297.7 450 43.3
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.9e-78 297.4 469 42.9
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 2.6e-75 287.0 476 41.0
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 5.9e-75 285.8 431 39.9
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 1.9e-73 280.8 482 41.7
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 4.2e-73 279.6 420 45.0
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 5.5e-73 279.3 435 38.6
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 2.1e-72 277.3 448 42.6
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.0e-71 275.0 392 44.4
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 5.7e-70 269.2 488 35.7
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.4e-70 268.9 427 40.3
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.4e-70 268.9 434 38.2
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 1.7e-69 267.7 499 36.7
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 1.4e-68 264.6 428 38.3
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 6.9e-68 262.3 420 43.3
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 7.7e-67 258.8 429 38.2
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.6e-64 251.1 391 39.1
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 2.3e-63 247.3 443 36.3
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 3.9e-63 246.5 453 35.3
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 3.3e-62 243.4 428 33.6
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 7.4e-62 242.3 433 36.3
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 1.3e-61 241.5 430 34.2
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 1.7e-61 241.1 437 33.4
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 1.7e-61 241.1 443 35.7
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 1.4e-60 238.0 425 40.5
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 1.8e-60 237.7 450 35.1
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 1.8e-60 237.7 476 34.2
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 5.3e-60 236.1 430 33.0
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 3.8e-58 229.9 438 35.8
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 5.5e-57 226.1 424 33.7
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 1.6e-56 224.6 430 33.5
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 1.6e-56 224.6 430 33.3
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 1.6e-56 224.6 430 33.5
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 2.1e-56 224.2 430 33.3
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 6.1e-56 222.6 435 33.6
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.4e-55 221.5 435 34.3
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 3.0e-55 220.3 222 51.8
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 1.5e-54 218.0 440 37.0
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 1.3e-53 214.9 439 33.5
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 2.8e-53 213.8 370 37.0
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 6.3e-53 212.6 386 37.0
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.3e-52 209.5 355 36.6
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 1.6e-51 208.0 419 34.6
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 3.8e-50 203.4 422 32.5
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 5.0e-50 203.0 441 31.7
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 2.1e-48 197.6 361 36.3
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 4.4e-46 189.9 445 31.9
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 1.7e-45 188.0 421 31.8
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 1.7e-45 188.0 336 37.5
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 6.3e-45 186.0 348 33.3
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.1e-44 185.3 328 36.0
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.6e-43 181.4 369 35.8
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 2.0e-43 181.0 358 35.2
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 1.9e-41 174.5 444 28.2
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 4.7e-40 169.9 394 31.7
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.4e-39 168.3 353 34.6
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 5.2e-39 166.4 383 32.9
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 1.2e-38 165.2 368 31.5
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 1.5e-38 164.9 379 31.9
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.5e-38 164.9 421 30.6
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 2.6e-38 164.1 369 31.7
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 3.4e-38 163.7 344 37.5
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.3e-37 161.8 153 52.9
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 2.2e-37 161.0 369 30.6
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 3.7e-37 160.2 374 32.4
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 2.0e-35 154.5 108 63.0
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 2.3e-34 151.0 140 57.9
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 6.5e-34 149.4 185 43.2
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 5.5e-33 146.4 145 52.4
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 1.6e-32 144.8 161 43.5
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.4e-31 141.7 381 30.7
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 1.4e-31 141.7 140 55.7
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 2.3e-31 141.0 147 51.0
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 2.3e-31 141.0 306 32.4
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 2.3e-31 141.0 306 32.4
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.0e-31 140.2 355 29.3
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 4.0e-31 140.2 140 55.0
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.5e-30 138.3 355 29.3
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.4e-30 137.1 398 29.4
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 5.7e-30 136.3 216 37.5
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 7.5e-30 136.0 390 28.5
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.4e-28 131.0 148 46.6
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 9.2e-28 129.0 400 28.8
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 4.3e-25 120.2 291 30.6
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 1.4e-23 115.2 216 35.2
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 5.8e-22 109.8 238 35.3
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 6.4e-21 106.3 171 36.8
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 9.2e-20 102.4 272 31.6
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 1.6e-19 101.7 292 27.7
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 2.7e-19 100.9 353 26.3
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 1.3e-18 98.6 145 35.9
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 8.6e-18 95.9 120 36.7
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 2.0e-14 84.7 70 55.7
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.3e-13 82.0 108 41.7
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.2e-13 81.3 115 42.6
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 8.3e-13 79.3 103 41.7
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 1.6e-11 75.1 67 56.7
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.7e-10 71.6 97 44.3
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 1.2e-06 58.9 59 50.8
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 5.8e-06 56.6 66 47.0
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 9.9e-06 55.8 40 60.0


User provided reference genes

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