Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0782G043 Amborella trichopoda HOM05D000165 ORTHO05D004914 4.4e-49 198.0 97 100.0
Cpa.g.sc26.307 Carica papaya HOM05D000165 ORTHO05D004914 6.8e-10 67.8 49 55.1
Nn1g04948 Nelumbo nucifera HOM05D000165 ORTHO05D004914 1.2e-09 67.0 47 61.7
Cc02_g17420 Coffea canephora HOM05D000165 ORTHO05D004914 1.5e-09 66.6 69 46.4
Duzib248G1507 Durio zibethinus HOM05D000165 ORTHO05D004914 1.5e-09 66.6 69 44.9
CANSAT54G2594 Cannabis sativa HOM05D000165 ORTHO05D004914 2.6e-09 65.9 46 60.9
Nn5g29646 Nelumbo nucifera HOM05D000165 ORTHO05D004914 2.6e-09 65.9 74 45.9
Potri.004G156300 Populus trichocarpa HOM05D000165 ORTHO05D004914 2.6e-09 65.9 70 47.1
QL11p044663 Quercus lobata HOM05D000165 ORTHO05D004914 2.6e-09 65.9 51 58.8
Gohir.A03G195200 Gossypium hirsutum HOM05D000165 ORTHO05D004914 3.4e-09 65.5 72 45.8
Gohir.D02G216200 Gossypium hirsutum HOM05D000165 ORTHO05D004914 3.4e-09 65.5 72 47.2
CiPaw.05G066000 Carya illinoinensis HOM05D000165 ORTHO05D004914 4.4e-09 65.1 77 44.2
Haze_17930 Corylus avellana HOM05D000165 ORTHO05D004914 4.4e-09 65.1 72 48.6
Gorai.005G244300 Gossypium raimondii HOM05D000165 ORTHO05D004914 4.4e-09 65.1 72 47.2
Peaxi162Scf00016g00624 Petunia axillaris HOM05D000165 ORTHO05D004914 4.4e-09 65.1 47 57.4
Sabra04G0104400 Salix brachista HOM05D000165 ORTHO05D004914 4.4e-09 65.1 72 41.7
Manes.11G086400 Manihot esculenta HOM05D000165 ORTHO05D004914 5.8e-09 64.7 49 57.1
Cfa004986 Carpinus fangiana HOM05D000165 ORTHO05D004914 7.5e-09 64.3 71 45.1
Lj9C374T7 Lonicera japonica HOM05D000165 ORTHO05D004914 7.5e-09 64.3 47 59.6
Manes.04G088900 Manihot esculenta HOM05D000165 ORTHO05D004914 7.5e-09 64.3 49 57.1
COL.COLO4_25947 Corchorus olitorius HOM05D000080 ORTHO05D000053 9.9e-09 63.9 48 58.3
GSVIVG01023786001 Vitis vinifera HOM05D000165 ORTHO05D004914 9.9e-09 63.9 47 57.4
CAN.G1058.3 Capsicum annuum HOM05D000165 ORTHO05D004914 1.3e-08 63.5 47 57.4
Solyc01g109740.3 Solanum lycopersicum HOM05D000165 ORTHO05D004914 1.3e-08 63.5 47 55.3
Sopen01g051930 Solanum pennellii HOM05D000165 ORTHO05D004914 1.3e-08 63.5 47 55.3
Thecc.09G258200 Theobroma cacao HOM05D000165 ORTHO05D407641 1.3e-08 63.5 100 34.0
Ciclev10029966m.g Citrus clementina HOM05D000165 ORTHO05D004914 1.7e-08 63.2 49 55.1
QL02p009002 Quercus lobata HOM05D000165 ORTHO05D004914 1.7e-08 63.2 71 46.5
TWI75G0763 Tripterygium wilfordii HOM05D000165 ORTHO05D004914 1.7e-08 63.2 51 52.9
Thecc.08G029400 Theobroma cacao HOM05D000165 ORTHO05D004914 2.2e-08 62.8 45 57.8
Cfa018173 Carpinus fangiana HOM05D000165 ORTHO05D004914 2.9e-08 62.4 70 47.1
DCAR_022981 Daucus carota HOM05D000165 ORTHO05D004914 2.9e-08 62.4 47 55.3
Sc08g0000570 Simmondsia chinensis HOM05D000165 ORTHO05D004914 2.9e-08 62.4 49 51.0
Thhalv10000702m.g Eutrema salsugineum HOM05D000165 ORTHO05D004914 3.7e-08 62.0 67 43.3
Manes.11G086200 Manihot esculenta HOM05D000165 ORTHO05D004914 3.7e-08 62.0 49 57.1
CANSAT25G0984 Cannabis sativa HOM05D000165 ORTHO05D004914 4.9e-08 61.6 74 41.9
CANSAT25G1217 Cannabis sativa HOM05D000165 ORTHO05D004914 4.9e-08 61.6 74 41.9
QL11p044619 Quercus lobata HOM05D000165 ORTHO05D004914 4.9e-08 61.6 51 56.9
PGSC0003DMG400000712 Solanum tuberosum HOM05D000165 ORTHO05D004914 4.9e-08 61.6 47 53.2
CiPaw.16G060100 Carya illinoinensis HOM05D000165 ORTHO05D004914 6.4e-08 61.2 71 47.9
Dinv35409 Davidia involucrata HOM05D000165 ORTHO05D004914 6.4e-08 61.2 45 57.8
Dinv35410 Davidia involucrata HOM05D000165 ORTHO05D004914 6.4e-08 61.2 45 57.8
Dinv35412 Davidia involucrata HOM05D000165 ORTHO05D004914 6.4e-08 61.2 45 57.8
Nitab4.5_0001759g0070 Nicotiana tabacum HOM05D000165 ORTHO05D004914 6.4e-08 61.2 69 43.5
TWI79G0014 Tripterygium wilfordii HOM05D000165 ORTHO05D004914 6.4e-08 61.2 51 51.0
MD15G1025000 Malus domestica HOM05D000165 ORTHO05D004914 1.1e-07 60.5 72 44.4
Nitab4.5_0002224g0130 Nicotiana tabacum HOM05D000165 ORTHO05D004914 1.1e-07 60.5 71 39.4
PSO541G1908 Papaver somniferum HOM05D000165 ORTHO05D004914 1.1e-07 60.5 47 53.2
GSVIVG01009729001 Vitis vinifera HOM05D000165 ORTHO05D004914 1.1e-07 60.5 71 40.8
Atru.chr5.3035 Acer truncatum HOM05D000165 ORTHO05D004914 1.4e-07 60.1 47 55.3
EL10Ac9g21711 Beta vulgaris HOM05D000165 ORTHO05D004914 1.4e-07 60.1 47 53.2
Dinv05180 Davidia involucrata HOM05D000165 ORTHO05D004914 1.4e-07 60.1 44 59.1
Dinv23509 Davidia involucrata HOM05D000165 ORTHO05D004914 1.4e-07 60.1 44 59.1
BcaB06g27777 Brassica carinata HOM05D000165 ORTHO05D004914 1.9e-07 59.7 51 51.0
BraA09t41197Z Brassica rapa HOM05D000165 ORTHO05D004914 1.9e-07 59.7 72 41.7
CAN.G1226.36 Capsicum annuum HOM05D000165 ORTHO05D004914 1.9e-07 59.7 46 54.3
CAN.G6839.1 Capsicum annuum HOM05D000165 ORTHO05D004914 1.9e-07 59.7 46 54.3
Ciclev10030015m.g Citrus clementina HOM05D000165 ORTHO05D004914 1.9e-07 59.7 47 51.1
Ciclev10030318m.g Citrus clementina HOM05D000165 ORTHO05D004914 1.9e-07 59.7 47 53.2
Dinv05181 Davidia involucrata HOM05D000165 ORTHO05D004914 1.9e-07 59.7 44 59.1
PSO675G8971 Papaver somniferum HOM05D000165 ORTHO05D004914 1.9e-07 59.7 47 51.1
CANSAT01G0347 Cannabis sativa HOM05D000165 ORTHO05D004914 2.4e-07 59.3 71 40.8
Ciclev10029855m.g Citrus clementina HOM05D000165 ORTHO05D004914 2.4e-07 59.3 47 53.2
Duzib093G1939 Durio zibethinus HOM05D000165 ORTHO05D004914 2.4e-07 59.3 45 55.6
Eucgr.F01580 Eucalyptus grandis HOM05D000165 ORTHO05D004914 2.4e-07 59.3 72 47.2
SEGI_25478 Sequoiadendron giganteum HOM05D000165 ORTHO05D004914 2.4e-07 59.3 49 59.2
Gohir.D05G260800 Gossypium hirsutum HOM05D000165 ORTHO05D004914 3.2e-07 58.9 71 40.8
C08p41340 Brassica napus HOM05D000165 ORTHO05D004914 4.1e-07 58.5 67 43.3
Eucgr.F01581 Eucalyptus grandis HOM05D000165 ORTHO05D004914 4.1e-07 58.5 72 47.2
Gorai.009G272700 Gossypium raimondii HOM05D000165 ORTHO05D004914 4.1e-07 58.5 43 58.1
Sed0023124 Sechium edule HOM05D000165 ORTHO05D004914 4.1e-07 58.5 47 53.2
TWI31G0493 Tripterygium wilfordii HOM05D000165 ORTHO05D004914 4.1e-07 58.5 51 49.0
AT2G21610 Arabidopsis thaliana HOM05D000165 ORTHO05D004914 5.4e-07 58.2 51 49.0
BcaC02g08778 Brassica carinata HOM05D000165 ORTHO05D004914 5.4e-07 58.2 51 49.0
C04p50760 Brassica napus HOM05D000165 ORTHO05D004914 5.4e-07 58.2 51 49.0
BolC4t26672H Brassica oleracea HOM05D000165 ORTHO05D004914 5.4e-07 58.2 51 49.0
A09p58090 Brassica napus HOM05D000165 ORTHO05D004914 7.1e-07 57.8 72 40.3
MD08G1029800 Malus domestica HOM05D000165 ORTHO05D004914 7.1e-07 57.8 72 41.7
AL4G10810 Arabidopsis lyrata HOM05D000165 ORTHO05D004914 9.2e-07 57.4 55 43.6
A04p16260 Brassica napus HOM05D000165 ORTHO05D004914 9.2e-07 57.4 50 50.0
BraA04t17265Z Brassica rapa HOM05D000165 ORTHO05D004914 9.2e-07 57.4 50 50.0
AUR62016752 Chenopodium quinoa HOM05D000165 ORTHO05D004914 9.2e-07 57.4 47 48.9
ClCG11G004340 Citrullus lanatus HOM05D000165 ORTHO05D004914 9.2e-07 57.4 47 51.1
HanXRQChr12g0376171 Helianthus annuus HOM05D000165 ORTHO05D004914 9.2e-07 57.4 69 46.4
BolC8t51696H Brassica oleracea HOM05D000165 ORTHO05D004914 1.2e-06 57.0 67 41.8
Peaxi162Scf00020g01818 Petunia axillaris HOM05D000165 ORTHO05D004914 1.2e-06 57.0 45 55.6
Solyc04g080530.3 Solanum lycopersicum HOM05D000165 ORTHO05D004914 1.2e-06 57.0 45 53.3
Thecc.09G258300 Theobroma cacao HOM05D000165 ORTHO05D004914 1.2e-06 57.0 69 42.0
Carub.0004s0064 Capsella rubella HOM05D000165 ORTHO05D004914 1.6e-06 56.6 72 40.3
CARHR112560 Cardamine hirsuta HOM05D000165 ORTHO05D004914 1.6e-06 56.6 51 47.1
Ciclev10030026m.g Citrus clementina HOM05D000165 ORTHO05D004914 1.6e-06 56.6 47 51.1
Sp4g00770 Schrenkiella parvula HOM05D000165 ORTHO05D004914 1.6e-06 56.6 50 48.0
Sopen04g034120 Solanum pennellii HOM05D000165 ORTHO05D004914 2.1e-06 56.2 45 53.3
BcaC07g41132 Brassica carinata HOM05D000165 ORTHO05D004914 2.7e-06 55.8 50 46.0
COL.COLO4_26290 Corchorus olitorius HOM05D000165 ORTHO05D004914 2.7e-06 55.8 45 51.1
Gohir.D05G196100 Gossypium hirsutum HOM05D000165 ORTHO05D004914 2.7e-06 55.8 77 36.4
Gohir.D05G260900 Gossypium hirsutum HOM05D000165 ORTHO05D004914 2.7e-06 55.8 44 52.3
Gorai.009G201000 Gossypium raimondii HOM05D000165 ORTHO05D004914 2.7e-06 55.8 77 36.4
THA.LOC104804131 Tarenaya hassleriana HOM05D000165 ORTHO05D004914 2.7e-06 55.8 51 49.0
Aqoxy6G01138 Aquilegia oxysepala HOM05D000165 ORTHO05D004914 3.5e-06 55.5 45 53.3
CsaV3_2G014800 Cucumis sativus L. HOM05D000165 ORTHO05D004914 3.5e-06 55.5 47 51.1
Gohir.A05G192900 Gossypium hirsutum HOM05D000165 ORTHO05D004914 3.5e-06 55.5 45 51.1
Hund17191 Selenicereus undatus HOM05D000165 ORTHO05D004914 3.5e-06 55.5 44 52.3
Ah.01g006320 Amaranthus hybridus HOM05D000165 ORTHO05D004914 4.6e-06 55.1 47 51.1
BcaB08g34987 Brassica carinata HOM05D000165 ORTHO05D004914 4.6e-06 55.1 51 47.1
AUR62011305 Chenopodium quinoa HOM05D000165 ORTHO05D004914 4.6e-06 55.1 47 46.8
AUR62016952 Chenopodium quinoa HOM05D000165 ORTHO05D004914 4.6e-06 55.1 47 46.8
MELO3C023302.2 Cucumis melo HOM05D000165 ORTHO05D004914 4.6e-06 55.1 47 51.1
Gohir.A12G123600 Gossypium hirsutum HOM05D000165 ORTHO05D001328 6.0e-06 54.7 73 38.4
FAN27G0485 Fragaria x ananassa HOM05D000165 ORTHO05D025524 7.8e-06 54.3 43 48.8
Gohir.D05G260950 Gossypium hirsutum HOM05D000165 ORTHO05D004914 7.8e-06 54.3 43 55.8
Sed0003986 Sechium edule HOM05D000165 ORTHO05D004914 7.8e-06 54.3 44 54.5


User provided reference genes

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