Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0782G041 Amborella trichopoda HOM05D002925 ORTHO05D003247 2.4e-53 211.8 101 100.0
Aqoxy6G00762 Aquilegia oxysepala HOM05D002925 ORTHO05D003247 1.3e-19 99.8 100 49.0
MBI02_g36599_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 6.5e-19 97.4 94 53.2
MBI02_g35745_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 1.4e-18 96.3 96 51.0
TAR625G1540 Trochodendron aralioides HOM05D002925 ORTHO05D003247 5.5e-18 94.4 89 57.3
vmacro01830 Vaccinium macrocarpon HOM05D002925 ORTHO05D003247 7.2e-18 94.0 91 52.7
Dinv24181 Davidia involucrata HOM05D002925 ORTHO05D003247 1.2e-17 93.2 96 53.1
Nn1g05384 Nelumbo nucifera HOM05D002925 ORTHO05D003247 1.2e-17 93.2 97 47.4
CSS0037093 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 1.6e-17 92.8 91 50.5
CDE10G0644 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 1.6e-17 92.8 97 48.5
CDE10G0684 Ceratophyllum demersum HOM05D002925 ORTHO05D003247 4.7e-17 91.3 97 47.4
MBI02_g05741_MAGBIO Magnolia biondii HOM05D002925 ORTHO05D003247 6.1e-17 90.9 95 49.5
QL11p021491 Quercus lobata HOM05D002925 ORTHO05D003247 6.1e-17 90.9 87 54.0
Actinidia24000 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.4e-16 89.7 98 51.0
Haze_10615 Corylus avellana HOM05D002925 ORTHO05D003247 1.5e-15 86.3 96 49.0
TAR076G0002 Trochodendron aralioides HOM05D002925 ORTHO05D003247 1.5e-15 86.3 89 46.1
Cfa005642 Carpinus fangiana HOM05D002925 ORTHO05D003247 5.7e-15 84.3 96 47.9
Glyma.08G178400 Glycine max HOM05D002925 ORTHO05D003247 9.7e-15 83.6 78 51.3
Cpa.g.sc42.38 Carica papaya HOM05D002925 ORTHO05D003247 1.3e-14 83.2 75 54.7
Hma1.2p1_0522F.1_g171730 Hydrangea macrophylla HOM05D002925 ORTHO05D003247 2.8e-14 82.0 88 50.0
CiPaw.06G154400 Carya illinoinensis HOM05D002925 ORTHO05D003247 3.7e-14 81.6 79 53.2
Phvul.006G205800 Phaseolus vulgaris HOM05D002925 ORTHO05D003247 3.7e-14 81.6 80 50.0
Atru.chr6.1160 Acer truncatum HOM05D002925 ORTHO05D003247 4.8e-14 81.3 82 50.0
Actinidia00275 Actinidia chinensis HOM05D002925 ORTHO05D003247 1.1e-13 80.1 90 50.0
Ca_00141_v3 Cicer arietinum L. HOM05D002925 ORTHO05D003247 1.4e-13 79.7 47 72.3
MD05G1043400 Malus domestica HOM05D002925 ORTHO05D003247 1.8e-13 79.3 75 52.0
Medtr2g009040 Medicago truncatula HOM05D002925 ORTHO05D003247 4.1e-13 78.2 47 72.3
TPR.G14997 Trifolium pratense HOM05D002925 ORTHO05D003247 5.3e-13 77.8 47 72.3
TPR.G25224 Trifolium pratense HOM05D002925 ORTHO05D003247 5.3e-13 77.8 47 72.3
arahy.Tifrunner.gnm1.ann1.M5A3LZ Arachis hypogaea HOM05D002925 ORTHO05D003247 1.2e-12 76.6 46 71.7
arahy.Tifrunner.gnm1.ann1.VGLF4N Arachis hypogaea HOM05D002925 ORTHO05D003247 1.2e-12 76.6 46 71.7
Rhsim11G0137200 Rhododendron simsii HOM05D002925 ORTHO05D003247 2.0e-12 75.9 41 73.2
VMungo0540G1175 Vigna mungo HOM05D002925 ORTHO05D003247 4.5e-12 74.7 41 73.2
Nitab4.5_0000863g0180 Nicotiana tabacum HOM05D002925 ORTHO05D003247 5.9e-12 74.3 97 41.2
SalBow5G0297 Salvia bowleyana HOM05D002925 ORTHO05D003247 5.9e-12 74.3 88 44.3
SalBow5G2582 Salvia bowleyana HOM05D002925 ORTHO05D003247 5.9e-12 74.3 88 44.3
Lalb_Chr15g0090391 Lupinus albus HOM05D002925 ORTHO05D003247 7.7e-12 73.9 93 43.0
Lalb_Chr18g0060531 Lupinus albus HOM05D002925 ORTHO05D003247 1.3e-11 73.2 71 49.3
Manes.07G032600 Manihot esculenta HOM05D002925 ORTHO05D003247 1.7e-11 72.8 40 72.5
TWI59G1115 Tripterygium wilfordii HOM05D002925 ORTHO05D003247 2.2e-11 72.4 48 66.7
Eucgr.I02657 Eucalyptus grandis HOM05D002925 ORTHO05D003247 3.8e-11 71.6 89 42.7
Potri.001G312900 Populus trichocarpa HOM05D002925 ORTHO05D003247 3.8e-11 71.6 41 70.7
Ciclev10027826m.g Citrus clementina HOM05D002925 ORTHO05D003247 5.0e-11 71.2 63 54.0
Prupe.8G062800 Prunus persica HOM05D002925 ORTHO05D003247 5.0e-11 71.2 73 49.3
Nitab4.5_0001619g0030 Nicotiana tabacum HOM05D002925 ORTHO05D003247 6.5e-11 70.9 88 40.9
SGA_v2.0_scaffold83G26306 Striga asiatica HOM05D002925 ORTHO05D003247 6.5e-11 70.9 82 43.9
unitig_22.g6065 Utricularia gibba HOM05D002925 ORTHO05D003247 6.5e-11 70.9 47 61.7
PGSC0003DMG400012552 Solanum tuberosum HOM05D002925 ORTHO05D003247 1.1e-10 70.1 84 42.9
RcHm_v2.0_Chr6g0271781 Rosa chinensis HOM05D002925 ORTHO05D003247 1.9e-10 69.3 76 43.4
AUR62013144 Chenopodium quinoa HOM05D002925 ORTHO05D003247 2.5e-10 68.9 47 61.7
RcHm_v2.0_Chr6g0271751 Rosa chinensis HOM05D002925 ORTHO05D003247 2.5e-10 68.9 76 43.4
Solyc01g105330.3 Solanum lycopersicum HOM05D002925 ORTHO05D003247 2.5e-10 68.9 84 42.9
Sopen01g047830 Solanum pennellii HOM05D002925 ORTHO05D003247 2.5e-10 68.9 84 42.9
Oeu036916.1 Olea europaea HOM05D002925 ORTHO05D003247 3.2e-10 68.6 52 57.7
MSTRG.20293 Avicennia marina HOM05D002925 ORTHO05D003247 4.2e-10 68.2 41 63.4
AUR62010148 Chenopodium quinoa HOM05D002925 ORTHO05D003247 4.2e-10 68.2 47 61.7
Ciclev10000205m.g Citrus clementina HOM05D002925 ORTHO05D003247 4.2e-10 68.2 68 44.1
Peaxi162Scf00001g00002 Petunia axillaris HOM05D002925 ORTHO05D003247 4.2e-10 68.2 49 61.2
Gohir.A03G174900 Gossypium hirsutum HOM05D002925 ORTHO05D003247 5.5e-10 67.8 77 46.8
Gohir.D02G198200 Gossypium hirsutum HOM05D002925 ORTHO05D003247 5.5e-10 67.8 77 46.8
Gorai.005G221500 Gossypium raimondii HOM05D002925 ORTHO05D003247 5.5e-10 67.8 77 46.8
PSO447G0391 Papaver somniferum HOM05D002925 ORTHO05D003247 5.5e-10 67.8 76 42.1
RcHm_v2.0_Chr6g0271621 Rosa chinensis HOM05D002925 ORTHO05D003247 7.2e-10 67.4 76 43.4
Cc02_g21380 Coffea canephora HOM05D002925 ORTHO05D003247 9.4e-10 67.0 43 62.8
PSO210G0747 Papaver somniferum HOM05D002925 ORTHO05D003247 9.4e-10 67.0 76 42.1
PSO829G0001 Papaver somniferum HOM05D002925 ORTHO05D003247 9.4e-10 67.0 76 42.1
Migut.B00599 Erythranthe guttata HOM05D002925 ORTHO05D003247 1.2e-09 66.6 40 65.0
Thecc.02G136300 Theobroma cacao HOM05D002925 ORTHO05D003247 1.6e-09 66.2 70 47.1
COL.COLO4_29615 Corchorus olitorius HOM05D002925 ORTHO05D003247 2.7e-09 65.5 38 68.4
Cfa013644 Carpinus fangiana HOM05D002925 ORTHO05D003247 3.6e-09 65.1 84 42.9
SGA_v2.0_scaffold14G07129 Striga asiatica HOM05D002925 ORTHO05D003247 3.6e-09 65.1 37 67.6
Ah.01g022240 Amaranthus hybridus HOM05D002925 ORTHO05D003247 4.7e-09 64.7 43 62.8
AUR62018927 Chenopodium quinoa HOM05D002925 ORTHO05D003247 8.0e-09 63.9 57 45.6
AUR62027772 Chenopodium quinoa HOM05D002925 ORTHO05D003247 8.0e-09 63.9 57 45.6
CSS0008363 Camellia sinensis var. sinensis HOM05D002925 ORTHO05D003247 1.0e-08 63.5 36 80.6
GSVIVG01009040001 Vitis vinifera HOM05D002925 ORTHO05D003247 1.0e-08 63.5 39 56.4
EL10Ac1g01207 Beta vulgaris HOM05D002925 ORTHO05D003247 2.3e-08 62.4 56 44.6
FAN20G1033 Fragaria x ananassa HOM05D002925 ORTHO05D003247 2.3e-08 62.4 99 39.4
Sc23g0000240 Simmondsia chinensis HOM05D002925 ORTHO05D003247 2.3e-08 62.4 36 61.1
Ah.05g169890 Amaranthus hybridus HOM05D002925 ORTHO05D003247 6.7e-08 60.8 39 56.4
CAN.G193.33 Capsicum annuum HOM05D002925 ORTHO05D000105 8.8e-08 60.5 81 37.0
DCAR_021864 Daucus carota HOM05D002925 ORTHO05D003247 8.8e-08 60.5 42 59.5
Os09g0473300 Oryza sativa ssp. japonica HOM05D036816 ORTHO05D003247 8.8e-08 60.5 74 36.5
QL12p036977 Quercus lobata HOM05D002925 ORTHO05D003247 8.8e-08 60.5 66 47.0
THA.LOC104807164 Tarenaya hassleriana HOM05D002925 ORTHO05D003247 2.0e-07 59.3 40 62.5
FAN15G3696 Fragaria x ananassa HOM05D002925 ORTHO05D003247 7.5e-07 57.4 37 64.9
Zm00001eb101320 Zea mays HOM05D002925 ORTHO05D003247 7.5e-07 57.4 74 35.1
CiPaw.07G178900 Carya illinoinensis HOM05D002925 ORTHO05D003247 9.7e-07 57.0 40 60.0
FvH4_2g11920 Fragaria vesca HOM05D002925 ORTHO05D003247 9.7e-07 57.0 90 40.0
Nitab4.5_0006616g0010 Nicotiana tabacum HOM05D002925 ORTHO05D003247 1.3e-06 56.6 67 40.3
Zm00001eb033590 Zea mays HOM05D036816 ORTHO05D003247 1.3e-06 56.6 82 36.6
Sabra02G0076700 Salix brachista HOM05D002925 ORTHO05D003247 1.7e-06 56.2 39 59.0
DCAR_008741 Daucus carota HOM05D002925 ORTHO05D003247 2.8e-06 55.5 41 53.7
Nitab4.5_0000232g0050 Nicotiana tabacum HOM05D002925 ORTHO05D003247 2.8e-06 55.5 67 38.8
Hund26967 Selenicereus undatus HOM05D002925 ORTHO05D003247 3.7e-06 55.1 36 50.0
Manes.18G066500 Manihot esculenta HOM05D002925 ORTHO05D003247 4.8e-06 54.7 44 54.5
MSTRG.24975 Avicennia marina HOM05D002925 ORTHO05D003247 8.2e-06 53.9 80 31.2


User provided reference genes

Program Settings