Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0776G086 Amborella trichopoda HOM05D006601 ORTHO05D008281 4.7e-96 354.8 209 100.0
GSVIVG01010682001 Vitis vinifera HOM05D006601 ORTHO05D008281 5.1e-50 201.8 149 68.5
Phvul.002G091600 Phaseolus vulgaris HOM05D006601 ORTHO05D008281 6.6e-50 201.4 172 64.5
PSO339G2358 Papaver somniferum HOM05D006601 ORTHO05D008281 1.9e-49 199.9 172 64.0
CSS0000414 Camellia sinensis var. sinensis HOM05D006601 ORTHO05D008281 5.6e-49 198.4 153 68.6
CiPaw.13G041000 Carya illinoinensis HOM05D006601 ORTHO05D008281 4.7e-48 195.3 147 67.3
Duzib114G0052 Durio zibethinus HOM05D006601 ORTHO05D008281 4.7e-48 195.3 174 58.0
Nitab4.5_0009484g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 4.7e-48 195.3 139 69.8
Rhsim09G0141800 Rhododendron simsii HOM05D006601 ORTHO05D008281 4.7e-48 195.3 175 62.3
Cfa010329 Carpinus fangiana HOM05D006601 ORTHO05D008281 6.2e-48 194.9 147 66.7
Nn6g34864 Nelumbo nucifera HOM05D006601 ORTHO05D008281 8.1e-48 194.5 130 74.6
Oeu026608.1 Olea europaea HOM05D006601 ORTHO05D008281 1.4e-47 193.7 149 67.1
Prupe.5G030400 Prunus persica HOM05D006601 ORTHO05D008281 1.8e-47 193.4 165 62.4
Glyma.02G110700 Glycine max HOM05D006601 ORTHO05D008281 3.1e-47 192.6 156 66.7
QL04p046797 Quercus lobata HOM05D006601 ORTHO05D008281 3.1e-47 192.6 140 67.9
QL04p047245 Quercus lobata HOM05D006601 ORTHO05D008281 3.1e-47 192.6 140 67.9
CAN.G1417.5 Capsicum annuum HOM05D006601 ORTHO05D008281 6.8e-47 191.4 169 60.4
Glyma.01G052400 Glycine max HOM05D006601 ORTHO05D008281 6.8e-47 191.4 147 68.7
Lj3A925T73 Lonicera japonica HOM05D006601 ORTHO05D008281 6.8e-47 191.4 141 65.2
TAR633G2162 Trochodendron aralioides HOM05D006601 ORTHO05D008281 6.8e-47 191.4 167 60.5
Peaxi162Scf00125g00234 Petunia axillaris HOM05D006601 ORTHO05D008281 8.9e-47 191.0 163 58.9
arahy.Tifrunner.gnm1.ann1.VBS9AQ Arachis hypogaea HOM05D006601 ORTHO05D008281 1.5e-46 190.3 168 62.5
Oeu030223.2 Olea europaea HOM05D006601 ORTHO05D008281 1.5e-46 190.3 171 60.2
Hund22273 Selenicereus undatus HOM05D006601 ORTHO05D008281 1.5e-46 190.3 140 69.3
Dinv12840 Davidia involucrata HOM05D006601 ORTHO05D008281 2.0e-46 189.9 165 60.6
MD06G1038200 Malus domestica HOM05D006601 ORTHO05D008281 2.0e-46 189.9 165 60.6
Solyc11g006760.3 Solanum lycopersicum HOM05D006601 ORTHO05D008281 2.6e-46 189.5 183 58.5
Sopen11g002690 Solanum pennellii HOM05D006601 ORTHO05D008281 2.6e-46 189.5 183 58.5
ECA232G0968 Erigeron canadensis HOM05D006601 ORTHO05D008281 3.4e-46 189.1 132 68.9
MBI17_g13115_MAGBIO Magnolia biondii HOM05D006601 ORTHO05D008281 3.4e-46 189.1 168 61.9
RcHm_v2.0_Chr2g0160691 Rosa chinensis HOM05D006601 ORTHO05D008281 3.4e-46 189.1 159 62.3
Gohir.A05G287400 Gossypium hirsutum HOM05D006601 ORTHO05D008281 4.4e-46 188.7 172 57.0
Gorai.009G303600 Gossypium raimondii HOM05D006601 ORTHO05D008281 5.8e-46 188.3 173 56.1
RcHm_v2.0_Chr6g0269151 Rosa chinensis HOM05D006601 ORTHO05D008281 5.8e-46 188.3 153 64.1
TPR.G31604 Trifolium pratense HOM05D006601 ORTHO05D008281 7.6e-46 188.0 119 75.6
Lalb_Chr10g0098441 Lupinus albus HOM05D006601 ORTHO05D008281 9.9e-46 187.6 160 62.5
Potri.008G019100 Populus trichocarpa HOM05D006601 ORTHO05D008281 9.9e-46 187.6 170 61.2
DCAR_006335 Daucus carota HOM05D006601 ORTHO05D008281 1.3e-45 187.2 171 56.7
Aqoxy2G01120 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.7e-45 186.8 171 59.6
Cc02_g09570 Coffea canephora HOM05D006601 ORTHO05D008281 1.7e-45 186.8 152 64.5
Gohir.D05G288500 Gossypium hirsutum HOM05D006601 ORTHO05D008281 2.2e-45 186.4 172 55.8
PGSC0003DMG400023966 Solanum tuberosum HOM05D006601 ORTHO05D008281 2.2e-45 186.4 171 60.2
Thecc.10G114200 Theobroma cacao HOM05D006601 ORTHO05D008281 2.2e-45 186.4 174 58.0
HPP92_000012 Vanilla planifolia HOM05D006601 ORTHO05D008281 2.9e-45 186.0 158 63.3
FvH4_2g10940 Fragaria vesca HOM05D006601 ORTHO05D008281 6.4e-45 184.9 150 63.3
FAN24G1745 Fragaria x ananassa HOM05D006601 ORTHO05D008281 6.4e-45 184.9 150 63.3
Eucgr.J00269 Eucalyptus grandis HOM05D006601 ORTHO05D008281 8.4e-45 184.5 158 60.8
Lsat_1_v5_gn_0_8161 Lactuca sativa HOM05D006601 ORTHO05D008281 1.1e-44 184.1 160 58.8
HanXRQChr11g0321661 Helianthus annuus HOM05D006601 ORTHO05D008281 1.4e-44 183.7 168 58.9
Potri.010G240300 Populus trichocarpa HOM05D006601 ORTHO05D008281 1.4e-44 183.7 157 62.4
SGA_v2.0_scaffold62G21313 Striga asiatica HOM05D006601 ORTHO05D008281 2.4e-44 183.0 148 66.2
Lj2g0012177 Lotus japonicus HOM05D006601 ORTHO05D008281 3.2e-44 182.6 167 59.3
vmacro10311 Vaccinium macrocarpon HOM05D006601 ORTHO05D008281 3.2e-44 182.6 170 57.1
MELO3C019900.2 Cucumis melo HOM05D006601 ORTHO05D008281 4.2e-44 182.2 132 70.5
Psat2g116120 Pisum sativum HOM05D006601 ORTHO05D008281 5.4e-44 181.8 156 62.2
PGR044G2546 Punica granatum HOM05D006601 ORTHO05D008281 9.2e-44 181.0 167 58.7
Atru.chr12.1047 Acer truncatum HOM05D006601 ORTHO05D008281 1.2e-43 180.6 168 58.9
Ca_04833_v3 Cicer arietinum L. HOM05D006601 ORTHO05D008281 1.2e-43 180.6 156 62.2
Manes.10G062700 Manihot esculenta HOM05D006601 ORTHO05D008281 1.2e-43 180.6 169 58.6
Medtr5g042160 Medicago truncatula HOM05D006601 ORTHO05D008281 2.1e-43 179.9 167 58.7
TWI63G1188 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 2.1e-43 179.9 121 69.4
SalBow3G0796 Salvia bowleyana HOM05D006601 ORTHO05D008281 2.7e-43 179.5 182 57.7
MSTRG.9054 Avicennia marina HOM05D006601 ORTHO05D008281 4.6e-43 178.7 153 62.7
COL.COLO4_03655 Corchorus olitorius HOM05D006601 ORTHO05D008281 4.6e-43 178.7 174 59.2
AUR62041519 Chenopodium quinoa HOM05D006601 ORTHO05D008281 6.0e-43 178.3 156 59.6
TWI38G1517 Tripterygium wilfordii HOM05D006601 ORTHO05D008281 6.0e-43 178.3 176 56.8
CsaV3_6G004290 Cucumis sativus L. HOM05D006601 ORTHO05D008281 2.3e-42 176.4 158 61.4
Migut.F00866 Erythranthe guttata HOM05D006601 ORTHO05D008281 5.1e-42 175.3 170 58.2
FAN20G1775 Fragaria x ananassa HOM05D006601 ORTHO05D008281 5.1e-42 175.3 115 73.0
ClCG08G008320 Citrullus lanatus HOM05D006601 ORTHO05D008281 6.6e-42 174.9 147 63.3
Os08g0558700 Oryza sativa ssp. japonica HOM05D006601 ORTHO05D008281 1.5e-41 173.7 129 65.9
unitig_899.g14469 Utricularia gibba HOM05D006601 ORTHO05D008281 1.5e-41 173.7 174 59.8
Sed0022988 Sechium edule HOM05D006601 ORTHO05D008281 2.5e-41 172.9 145 62.8
SEGI_26123 Sequoiadendron giganteum HOM05D006601 ORTHO05D008281 3.3e-41 172.6 185 51.9
Ciclev10016593m.g Citrus clementina HOM05D006601 ORTHO05D008281 7.3e-41 171.4 149 60.4
AT3G52220 Arabidopsis thaliana HOM05D006601 ORTHO05D008281 1.3e-40 170.6 171 55.0
AL5G32810 Arabidopsis lyrata HOM05D006601 ORTHO05D008281 2.8e-40 169.5 171 54.4
Aa31LG10G7330 Aethionema arabicum HOM05D006601 ORTHO05D008281 3.6e-40 169.1 119 67.2
FAN15G0841 Fragaria x ananassa HOM05D006601 ORTHO05D008281 1.1e-39 167.5 170 54.7
THA.LOC104823558 Tarenaya hassleriana HOM05D006601 ORTHO05D008281 1.4e-39 167.2 173 55.5
Sp5g10040 Schrenkiella parvula HOM05D006601 ORTHO05D008281 2.4e-39 166.4 171 54.4
Carub.0005s1858 Capsella rubella HOM05D006601 ORTHO05D008281 4.0e-39 165.6 180 53.3
A09p45280 Brassica napus HOM05D006601 ORTHO05D008281 9.0e-39 164.5 178 48.9
BraA09t39991Z Brassica rapa HOM05D006601 ORTHO05D008281 9.0e-39 164.5 178 48.9
arahy.Tifrunner.gnm1.ann1.0XG3CD Arachis hypogaea HOM05D006601 ORTHO05D008281 2.0e-38 163.3 172 56.4
C08p27460 Brassica napus HOM05D006601 ORTHO05D008281 2.6e-38 162.9 178 51.1
BolC8t50363H Brassica oleracea HOM05D006601 ORTHO05D008281 2.6e-38 162.9 178 51.1
Thhalv10010678m.g Eutrema salsugineum HOM05D006601 ORTHO05D008281 3.4e-38 162.5 175 50.9
CARHR161980 Cardamine hirsuta HOM05D006601 ORTHO05D008281 4.4e-38 162.2 180 52.2
Pp3c1_22490 Physcomitrium patens HOM05D006601 ORTHO05D008281 4.6e-35 152.1 156 53.2
SMO367G0990 Selaginella moellendorffii HOM05D006601 ORTHO05D008281 4.6e-35 152.1 167 50.9
Mapoly0044s0087 Marchantia polymorpha HOM05D006601 ORTHO05D008281 1.7e-34 150.2 121 60.3
Sabra10G0188100 Salix brachista HOM05D006601 ORTHO05D008281 2.3e-34 149.8 221 43.0
CDE04G0959 Ceratophyllum demersum HOM05D006601 ORTHO05D008281 5.6e-33 145.2 176 51.7
Nitab4.5_0002586g0010 Nicotiana tabacum HOM05D006601 ORTHO05D008281 9.0e-31 137.9 148 54.7
Haze_03300 Corylus avellana HOM05D006601 ORTHO05D008281 3.4e-30 136.0 118 61.0
Actinidia31106 Actinidia chinensis HOM05D006601 ORTHO05D008281 4.5e-30 135.6 76 82.9
Sc09g0005300 Simmondsia chinensis HOM05D006601 ORTHO05D008281 5.4e-28 128.6 140 53.6
PSO692G0001 Papaver somniferum HOM05D006601 ORTHO05D008281 6.2e-24 115.2 129 55.8
PSO801G0555 Papaver somniferum HOM05D006601 ORTHO05D008281 6.2e-24 115.2 129 55.8
AUR62042084 Chenopodium quinoa HOM05D006601 ORTHO05D008281 8.1e-24 114.8 140 49.3
BcaC07g39592 Brassica carinata HOM05D006601 ORTHO05D008281 4.0e-23 112.5 198 38.9
MCO05G050 Micromonas commoda HOM05D006601 ORTHO05D008281 2.9e-21 106.3 121 50.4
Cre18.g749347 Chlamydomonas reinhardtii HOM05D006601 ORTHO05D008281 8.7e-18 94.7 136 41.9
Aqoxy2G01116 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 7.4e-17 91.7 86 59.3
Cfa024623 Carpinus fangiana HOM05D006601 ORTHO05D008281 1.5e-14 84.0 123 35.8
CiPaw.14G033700 Carya illinoinensis HOM05D006601 ORTHO05D008281 7.6e-14 81.6 71 60.6
Zm00001eb039400 Zea mays HOM05D006601 ORTHO05D008281 6.5e-13 78.6 106 47.2
Ah.06g186680 Amaranthus hybridus HOM05D006601 ORTHO05D008281 1.1e-12 77.8 109 44.0
Lsat_1_v5_gn_4_8660 Lactuca sativa HOM05D006601 ORTHO05D008281 5.1e-10 68.9 55 58.2
AagrBONN_evm.TU.Sc2ySwM_228.2727 Anthoceros agrestis HOM05D006601 ORTHO05D008281 1.3e-08 64.3 57 54.4
EL10Ac7g17292 Beta vulgaris HOM05D006601 ORTHO05D008281 8.2e-08 61.6 30 80.0
Aqoxy2G01117 Aquilegia oxysepala HOM05D006601 ORTHO05D008281 1.1e-07 61.2 30 80.0
Hma1.2p1_1491F.1_g286720 Hydrangea macrophylla HOM05D006601 ORTHO05D008281 9.0e-07 58.2 37 73.0


User provided reference genes

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