Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0776G079 Amborella trichopoda HOM05D004173 ORTHO05D004885 7.2e-142 507.3 266 100.0
ATR0124G034 Amborella trichopoda HOM05D004173 ORTHO05D004885 3.7e-114 415.2 261 85.1
TAR365G1150 Trochodendron aralioides HOM05D004173 ORTHO05D004885 1.5e-35 154.1 186 46.8
TAR365G0355 Trochodendron aralioides HOM05D004173 ORTHO05D004885 2.0e-35 153.7 186 46.8
MBI18_g38876_MAGBIO Magnolia biondii HOM05D004173 ORTHO05D004885 1.0e-34 151.4 173 48.6
PSO675G3687 Papaver somniferum HOM05D004173 ORTHO05D004885 1.0e-31 141.4 189 41.3
Aqoxy5G02899 Aquilegia oxysepala HOM05D004173 ORTHO05D004885 3.9e-31 139.4 187 41.7
PSO421G0661 Papaver somniferum HOM05D004173 ORTHO05D004885 6.7e-31 138.7 183 41.5
PSO104G0082 Papaver somniferum HOM05D004173 ORTHO05D004885 1.3e-29 134.4 184 40.2
Nn2g10306 Nelumbo nucifera HOM05D004173 ORTHO05D004885 2.8e-29 133.3 169 45.0
HPP92_012755 Vanilla planifolia HOM05D004173 ORTHO05D004885 2.4e-28 130.2 181 42.0
PSO063G2850 Papaver somniferum HOM05D004173 ORTHO05D004885 4.1e-28 129.4 181 38.7
Zm00001eb056440 Zea mays HOM05D004173 ORTHO05D004885 5.3e-28 129.0 161 41.0
CDE02G3998 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 1.5e-27 127.5 158 44.3
Zm00001eb215400 Zea mays HOM05D004173 ORTHO05D004885 2.0e-27 127.1 159 40.3
CSS0041127 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.5e-27 125.9 188 39.4
CSS0049649 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 4.5e-27 125.9 188 39.4
Nn5g26849 Nelumbo nucifera HOM05D004173 ORTHO05D004885 4.5e-27 125.9 184 42.9
PSO266G0063 Papaver somniferum HOM05D004173 ORTHO05D004885 7.7e-27 125.2 176 40.9
PSO478G3294 Papaver somniferum HOM05D004173 ORTHO05D004885 1.7e-26 124.0 174 41.4
CDE04G1376 Ceratophyllum demersum HOM05D004173 ORTHO05D004885 2.5e-25 120.2 176 40.3
Os03g0736900 Oryza sativa ssp. japonica HOM05D004173 ORTHO05D004885 9.4e-25 118.2 156 41.0
Cc10_g16360 Coffea canephora HOM05D004173 ORTHO05D004885 7.9e-24 115.2 193 35.8
SalBow3G3840 Salvia bowleyana HOM05D004173 ORTHO05D004885 7.9e-24 115.2 165 39.4
vmacro09960 Vaccinium macrocarpon HOM05D004173 ORTHO05D004885 1.4e-23 114.4 165 40.0
Pp3c2_14400 Physcomitrium patens HOM05D004173 ORTHO05D004885 5.1e-23 112.5 169 37.9
AL5G37690 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 6.7e-23 112.1 164 42.7
Migut.F00606 Erythranthe guttata HOM05D004173 ORTHO05D004885 6.7e-23 112.1 177 35.6
SEGI_33270 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 8.8e-23 111.7 167 38.3
MSTRG.18054 Avicennia marina HOM05D004173 ORTHO05D004885 1.5e-22 110.9 177 37.9
Carub.0005s2314 Capsella rubella HOM05D004173 ORTHO05D004885 2.6e-22 110.2 178 38.2
Duzib114G0418 Durio zibethinus HOM05D004173 ORTHO05D004885 3.3e-22 109.8 164 37.2
A09p49310 Brassica napus HOM05D004173 ORTHO05D004885 4.4e-22 109.4 162 39.5
BraA09t40385Z Brassica rapa HOM05D004173 ORTHO05D004885 4.4e-22 109.4 162 39.5
SEGI_03811 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 4.4e-22 109.4 167 38.3
AT3G56360 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 5.7e-22 109.0 166 42.2
Dinv34482 Davidia involucrata HOM05D004173 ORTHO05D004885 5.7e-22 109.0 159 40.3
MD01G1167600 Malus domestica HOM05D004173 ORTHO05D004885 9.7e-22 108.2 167 40.1
Nitab4.5_0002279g0040 Nicotiana tabacum HOM05D004173 ORTHO05D004885 9.7e-22 108.2 175 34.3
Sp6g37580 Schrenkiella parvula HOM05D004173 ORTHO05D004885 1.3e-21 107.8 175 37.1
Oeu025786.2 Olea europaea HOM05D004173 ORTHO05D004885 1.7e-21 107.5 167 37.1
Thecc.10G181100 Theobroma cacao HOM05D004173 ORTHO05D004885 1.7e-21 107.5 172 34.3
DCAR_014665 Daucus carota HOM05D004173 ORTHO05D004885 2.2e-21 107.1 179 36.9
Prupe.2G264000 Prunus persica HOM05D004173 ORTHO05D004885 2.2e-21 107.1 164 42.1
RcHm_v2.0_Chr1g0372231 Rosa chinensis HOM05D004173 ORTHO05D004885 2.8e-21 106.7 185 34.1
Eucgr.J00114 Eucalyptus grandis HOM05D004173 ORTHO05D004885 3.7e-21 106.3 178 37.1
Thhalv10006215m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 3.7e-21 106.3 164 40.2
MD07G1233600 Malus domestica HOM05D004173 ORTHO05D004885 8.2e-21 105.1 162 36.4
FAN03G3439 Fragaria x ananassa HOM05D004173 ORTHO05D004885 1.1e-20 104.8 177 36.7
CARHR166510 Cardamine hirsuta HOM05D004173 ORTHO05D004885 1.4e-20 104.4 170 38.8
BcaC07g39948 Brassica carinata HOM05D004173 ORTHO05D004885 1.8e-20 104.0 162 40.1
C08p31680 Brassica napus HOM05D004173 ORTHO05D004885 1.8e-20 104.0 162 40.1
BolC8t50789H Brassica oleracea HOM05D004173 ORTHO05D004885 1.8e-20 104.0 162 39.5
HanXRQChr08g0221561 Helianthus annuus HOM05D004173 ORTHO05D004885 1.8e-20 104.0 153 37.3
FAN10G3668 Fragaria x ananassa HOM05D004173 ORTHO05D004885 2.4e-20 103.6 177 36.7
C09p71450 Brassica napus HOM05D004173 ORTHO05D004885 3.1e-20 103.2 165 38.8
BolC9t59908H Brassica oleracea HOM05D004173 ORTHO05D004885 3.1e-20 103.2 165 38.8
FvH4_7g25910 Fragaria vesca HOM05D004173 ORTHO05D004885 3.1e-20 103.2 176 35.2
FAN06G1323 Fragaria x ananassa HOM05D004173 ORTHO05D004885 3.1e-20 103.2 176 35.2
Rhsim09G0185800 Rhododendron simsii HOM05D004173 ORTHO05D004885 3.1e-20 103.2 154 41.6
Actinidia00999 Actinidia chinensis HOM05D004173 ORTHO05D004885 4.1e-20 102.8 166 34.9
Medtr3g093970 Medicago truncatula HOM05D004173 ORTHO05D004885 4.1e-20 102.8 157 38.9
QL08p064831 Quercus lobata HOM05D004173 ORTHO05D004885 5.3e-20 102.4 155 37.4
Sp5g06150 Schrenkiella parvula HOM05D004173 ORTHO05D004885 5.3e-20 102.4 172 37.2
Sc10g0002990 Simmondsia chinensis HOM05D004173 ORTHO05D004885 5.3e-20 102.4 154 39.0
PGSC0003DMG400016638 Solanum tuberosum HOM05D004173 ORTHO05D004885 5.3e-20 102.4 169 35.5
BolC4t25192H Brassica oleracea HOM05D004173 ORTHO05D004885 6.9e-20 102.1 167 41.3
Pp3c14_17300 Physcomitrium patens HOM05D004173 ORTHO05D004885 6.9e-20 102.1 171 35.1
A10p30940 Brassica napus HOM05D004173 ORTHO05D004885 9.1e-20 101.7 165 38.2
BraA10t45139Z Brassica rapa HOM05D004173 ORTHO05D004885 9.1e-20 101.7 165 38.2
Ah.12g064380 Amaranthus hybridus HOM05D004173 ORTHO05D004885 1.2e-19 101.3 165 35.8
CAN.G24.14 Capsicum annuum HOM05D004173 ORTHO05D004885 1.2e-19 101.3 170 33.5
Lsat_1_v5_gn_8_11461 Lactuca sativa HOM05D004173 ORTHO05D004885 1.2e-19 101.3 165 37.0
Potri.019G058000 Populus trichocarpa HOM05D004173 ORTHO05D004885 1.2e-19 101.3 174 36.2
BcaC02g09832 Brassica carinata HOM05D004173 ORTHO05D004885 1.5e-19 100.9 167 40.7
BcaC07g39950 Brassica carinata HOM05D004173 ORTHO05D004885 1.5e-19 100.9 164 38.4
C04p36060 Brassica napus HOM05D004173 ORTHO05D004885 1.5e-19 100.9 167 40.7
Thhalv10014558m.g Eutrema salsugineum HOM05D004173 ORTHO05D004885 1.5e-19 100.9 167 36.5
SGA_v2.0_scaffold60G20889 Striga asiatica HOM05D004173 ORTHO05D004885 2.0e-19 100.5 162 37.7
A04p03290 Brassica napus HOM05D004173 ORTHO05D004885 2.6e-19 100.1 169 40.2
BraA04t16106Z Brassica rapa HOM05D004173 ORTHO05D004885 2.6e-19 100.1 169 40.2
Sopen06g015380 Solanum pennellii HOM05D004173 ORTHO05D004885 2.6e-19 100.1 183 35.0
THA.LOC104803208 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 2.6e-19 100.1 160 39.4
AL6G15090 Arabidopsis lyrata HOM05D004173 ORTHO05D004885 4.5e-19 99.4 161 36.6
CARHR207980 Cardamine hirsuta HOM05D004173 ORTHO05D004885 4.5e-19 99.4 157 36.9
Cfa001210 Carpinus fangiana HOM05D004173 ORTHO05D004885 4.5e-19 99.4 177 35.6
AUR62024933 Chenopodium quinoa HOM05D004173 ORTHO05D004885 4.5e-19 99.4 155 38.7
Nitab4.5_0000171g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 4.5e-19 99.4 162 33.3
CAN.G100.76 Capsicum annuum HOM05D004173 ORTHO05D004885 5.9e-19 99.0 168 35.7
Ciclev10032642m.g Citrus clementina HOM05D004173 ORTHO05D004885 5.9e-19 99.0 171 39.2
PGR044G2104 Punica granatum HOM05D004173 ORTHO05D004885 5.9e-19 99.0 162 36.4
TWI73G0681 Tripterygium wilfordii HOM05D004173 ORTHO05D004885 5.9e-19 99.0 169 36.1
CsaV3_6G002310 Cucumis sativus L. HOM05D004173 ORTHO05D004885 7.7e-19 98.6 164 31.7
Duzib128G1795 Durio zibethinus HOM05D004173 ORTHO05D004885 7.7e-19 98.6 156 35.9
ECA238G3313 Erigeron canadensis HOM05D004173 ORTHO05D004885 7.7e-19 98.6 152 38.8
Gohir.D05G280200 Gossypium hirsutum HOM05D004173 ORTHO05D004885 7.7e-19 98.6 157 36.9
Solyc06g049020.1 Solanum lycopersicum HOM05D004173 ORTHO05D004885 7.7e-19 98.6 169 34.9
THA.LOC104813511 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 7.7e-19 98.6 172 37.8
AT5G05250 Arabidopsis thaliana HOM05D004173 ORTHO05D004885 1.3e-18 97.8 159 36.5
BcaB02g08372 Brassica carinata HOM05D004173 ORTHO05D004885 1.3e-18 97.8 163 39.3
Psat5g068840 Pisum sativum HOM05D004173 ORTHO05D004885 1.3e-18 97.8 160 37.5
Carub.0006s0418 Capsella rubella HOM05D004173 ORTHO05D004885 1.7e-18 97.4 159 36.5
Ca_16866_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.7e-18 97.4 161 38.5
Ca_29953_v3 Cicer arietinum L. HOM05D004173 ORTHO05D004885 1.7e-18 97.4 161 38.5
Lalb_Chr23g0272221 Lupinus albus HOM05D004173 ORTHO05D004885 1.7e-18 97.4 162 38.3
Peaxi162Scf00739g00035 Petunia axillaris HOM05D004173 ORTHO05D004885 2.2e-18 97.1 165 33.9
Gorai.009G293700 Gossypium raimondii HOM05D004173 ORTHO05D004885 2.9e-18 96.7 157 36.3
Manes.10G001300 Manihot esculenta HOM05D004173 ORTHO05D004885 2.9e-18 96.7 159 36.5
Gohir.A05G278500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.0e-18 95.9 157 36.3
Oeu063983.1 Olea europaea HOM05D004173 ORTHO05D004885 5.0e-18 95.9 163 34.4
TPR.G1732 Trifolium pratense HOM05D004173 ORTHO05D004885 5.0e-18 95.9 160 40.0
HanXRQChr09g0252211 Helianthus annuus HOM05D004173 ORTHO05D004885 6.5e-18 95.5 178 36.0
Aa31LG10G11250 Aethionema arabicum HOM05D004173 ORTHO05D004885 8.5e-18 95.1 164 36.6
Hma1.2p1_0264F.1_g106180 Hydrangea macrophylla HOM05D004173 ORTHO05D004885 8.5e-18 95.1 167 35.9
PGSC0003DMG400011642 Solanum tuberosum HOM05D004173 ORTHO05D004885 8.5e-18 95.1 174 31.6
Lalb_Chr23g0272201 Lupinus albus HOM05D004173 ORTHO05D004885 1.1e-17 94.7 179 33.5
AUR62030611 Chenopodium quinoa HOM05D004173 ORTHO05D004885 1.9e-17 94.0 153 38.6
Peaxi162Scf00739g00036 Petunia axillaris HOM05D004173 ORTHO05D004885 2.5e-17 93.6 153 33.3
Atru.chr12.182 Acer truncatum HOM05D004173 ORTHO05D004885 3.2e-17 93.2 184 32.6
Manes.07G143600 Manihot esculenta HOM05D004173 ORTHO05D004885 4.2e-17 92.8 170 34.7
THA.LOC104824365 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 4.2e-17 92.8 168 36.3
Aa31LG11G6110 Aethionema arabicum HOM05D004173 ORTHO05D004885 5.5e-17 92.4 169 34.3
Sed0028126 Sechium edule HOM05D004173 ORTHO05D004885 5.5e-17 92.4 166 32.5
MELO3C020007.2 Cucumis melo HOM05D004173 ORTHO05D004885 7.2e-17 92.0 166 30.1
Manes.07G141000 Manihot esculenta HOM05D004173 ORTHO05D004885 9.4e-17 91.7 174 35.1
CANSAT25G2618 Cannabis sativa HOM05D004173 ORTHO05D004885 1.2e-16 91.3 165 35.2
Lj1g0005357 Lotus japonicus HOM05D004173 ORTHO05D004885 1.6e-16 90.9 157 35.7
Glyma.06G142900 Glycine max HOM05D004173 ORTHO05D004885 4.7e-16 89.4 164 35.4
VMungo1309G0457 Vigna mungo HOM05D004173 ORTHO05D004885 6.1e-16 89.0 159 35.8
Cpa.g.sc19.59 Carica papaya HOM05D004173 ORTHO05D004885 8.0e-16 88.6 186 33.3
arahy.Tifrunner.gnm1.ann1.7F477P Arachis hypogaea HOM05D004173 ORTHO05D004885 1.0e-15 88.2 161 34.2
Phvul.009G044100 Phaseolus vulgaris HOM05D004173 ORTHO05D004885 1.0e-15 88.2 158 38.0
Lsat_1_v5_gn_9_60020 Lactuca sativa HOM05D004173 ORTHO05D004885 3.0e-15 86.7 164 36.0
Glyma.04G222500 Glycine max HOM05D004173 ORTHO05D004885 3.9e-15 86.3 164 34.8
Sopen05g030770 Solanum pennellii HOM05D004173 ORTHO05D004885 3.9e-15 86.3 174 32.8
CSS0045557 Camellia sinensis var. sinensis HOM05D004173 ORTHO05D004885 5.2e-15 85.9 191 31.4
THA.LOC104826832 Tarenaya hassleriana HOM05D004173 ORTHO05D004885 5.2e-15 85.9 167 33.5
BcaC06g32235 Brassica carinata HOM05D004173 ORTHO05D004885 8.8e-15 85.1 162 35.2
Sc05g0006880 Simmondsia chinensis HOM05D004173 ORTHO05D004885 1.5e-14 84.3 146 37.7
CAN.G203.54 Capsicum annuum HOM05D004173 ORTHO05D004885 2.0e-14 84.0 171 28.7
Gohir.D13G006700 Gossypium hirsutum HOM05D004173 ORTHO05D004885 2.0e-14 84.0 163 35.0
Lsat_1_v5_gn_2_126200 Lactuca sativa HOM05D004173 ORTHO05D004885 2.6e-14 83.6 153 36.6
Gorai.013G006900 Gossypium raimondii HOM05D004173 ORTHO05D004885 4.4e-14 82.8 163 34.4
Gohir.A13G006500 Gossypium hirsutum HOM05D004173 ORTHO05D004885 5.7e-14 82.4 163 34.4
Ah.14g087000 Amaranthus hybridus HOM05D004173 ORTHO05D004885 8.2e-13 78.6 197 27.4
Peaxi162Scf00167g01213 Petunia axillaris HOM05D004173 ORTHO05D004885 1.8e-12 77.4 156 33.3
unitig_37.g11910 Utricularia gibba HOM05D004173 ORTHO05D004885 1.8e-12 77.4 160 31.2
ClCG11G005670 Citrullus lanatus HOM05D004173 ORTHO05D004885 1.2e-11 74.7 146 30.8
CiPaw.01G306500 Carya illinoinensis HOM05D004173 ORTHO05D004885 1.6e-11 74.3 151 31.8
Gohir.A05G403100 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.0e-10 71.6 161 28.6
Gohir.D04G012400 Gossypium hirsutum HOM05D004173 ORTHO05D004885 1.3e-10 71.2 157 27.4
Gorai.012G014700 Gossypium raimondii HOM05D004173 ORTHO05D004885 1.7e-10 70.9 158 29.1
Haze_17356 Corylus avellana HOM05D004173 ORTHO05D004885 5.0e-10 69.3 183 28.4
Mapoly0082s0027 Marchantia polymorpha HOM05D004173 ORTHO05D004885 8.5e-10 68.6 156 30.1
Dinv21845 Davidia involucrata HOM05D004173 ORTHO05D004885 1.5e-09 67.8 159 31.4
EL10Ac2g02643 Beta vulgaris HOM05D004173 ORTHO05D004885 4.2e-09 66.2 130 29.2
Pp3c10_16350 Physcomitrium patens HOM05D004173 ORTHO05D004885 5.5e-09 65.9 145 30.3
Actinidia07794 Actinidia chinensis HOM05D004173 ORTHO05D004885 4.7e-08 62.8 176 28.4
CBR_g24287 Chara braunii HOM05D004173 ORTHO05D004885 1.4e-07 61.2 98 32.7
Nitab4.5_0002846g0010 Nicotiana tabacum HOM05D004173 ORTHO05D004885 1.4e-07 61.2 115 29.6
Rhsim10G0215400 Rhododendron simsii HOM05D000820 ORTHO05D016785 4.0e-07 59.7 109 36.7
Dinv05055 Davidia involucrata HOM05D004173 ORTHO05D004885 5.7e-06 55.8 102 36.3
SEGI_40362 Sequoiadendron giganteum HOM05D004173 ORTHO05D004885 9.7e-06 55.1 77 36.4


User provided reference genes

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