Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 3.9e-301 1037.3 525 100.0
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 9.3e-210 733.8 529 72.4
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 1.4e-205 719.9 534 69.7
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 9.0e-205 717.2 529 69.0
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.1e-201 706.1 538 68.2
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.7e-201 705.7 450 76.2
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 1.1e-199 700.3 534 68.2
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 5.7e-199 698.0 536 67.7
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 7.4e-199 697.6 530 66.8
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 9.6e-199 697.2 531 67.6
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 6.3e-198 694.5 526 68.1
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 4.1e-197 691.8 529 66.7
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 6.9e-197 691.0 535 66.0
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 2.0e-196 689.5 530 66.6
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 2.0e-196 689.5 433 77.6
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 1.3e-195 686.8 529 66.9
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.4e-194 683.3 531 66.1
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 2.5e-194 682.6 530 66.8
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 3.2e-194 682.2 531 65.9
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 3.2e-194 682.2 533 66.2
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 5.5e-194 681.4 529 66.4
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 1.6e-193 679.9 529 66.9
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 1.6e-193 679.9 529 66.9
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 3.5e-193 678.7 534 65.7
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 6.1e-193 677.9 531 65.7
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 1.0e-192 677.2 533 66.4
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.8e-192 676.4 530 67.4
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 1.5e-191 673.3 532 64.3
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.5e-191 672.5 531 65.2
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.3e-191 672.2 530 67.0
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 4.3e-191 671.8 528 66.9
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 2.8e-190 669.1 529 64.8
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 6.3e-190 667.9 536 64.9
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 8.2e-190 667.5 455 73.0
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 1.8e-189 666.4 527 66.2
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 2.4e-189 666.0 529 65.4
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 2.4e-189 666.0 453 73.5
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 4.1e-189 665.2 527 66.0
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 4.1e-189 665.2 433 75.1
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 2.0e-188 662.9 597 59.1
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 3.8e-187 658.7 453 71.7
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.1e-186 657.1 522 65.7
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 2.5e-186 656.0 557 63.2
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 2.5e-186 656.0 526 64.8
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 2.5e-186 656.0 542 62.9
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 4.2e-186 655.2 557 63.2
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 9.4e-186 654.1 542 63.1
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 9.4e-186 654.1 463 71.3
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-185 653.7 532 64.3
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.3e-184 649.4 470 70.9
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 3.0e-184 649.0 534 61.8
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 3.0e-184 649.0 539 63.5
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.1e-183 647.1 451 70.1
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.5e-183 646.7 537 63.5
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 3.3e-183 645.6 456 71.3
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 4.3e-183 645.2 531 63.1
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.7e-183 644.0 534 63.9
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.7e-182 642.1 527 63.9
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 4.8e-182 641.7 409 76.5
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-181 640.2 548 62.8
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 4.1e-181 638.6 536 63.8
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.2e-180 637.1 433 72.5
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.5e-180 636.7 532 63.7
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 4.5e-180 635.2 409 77.3
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.9e-178 629.8 543 59.9
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 4.7e-177 625.2 489 65.2
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.5e-175 620.2 534 59.4
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 4.4e-175 618.6 532 62.4
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 6.3e-174 614.8 527 61.1
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 2.0e-172 609.8 538 60.8
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 4.5e-172 608.6 531 60.6
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 5.0e-171 605.1 805 45.5
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 1.1e-170 604.0 455 65.3
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.5e-170 603.6 532 58.8
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.6e-169 600.1 533 58.3
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 3.0e-168 595.9 533 58.0
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 3.0e-168 595.9 533 58.0
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 8.8e-168 594.3 530 60.0
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.1e-167 594.0 540 58.0
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 2.6e-167 592.8 456 63.8
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 7.5e-167 591.3 536 57.6
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 3.7e-166 589.0 549 56.5
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 6.3e-166 588.2 527 58.1
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 6.3e-166 588.2 403 72.5
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 8.2e-166 587.8 528 58.1
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 3.1e-165 585.9 527 58.1
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 1.2e-164 583.9 541 57.1
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 1.0e-163 580.9 527 57.9
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 8.5e-163 577.8 467 65.1
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 2.7e-161 572.8 458 64.0
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 4.0e-160 568.9 459 64.9
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 9.8e-159 564.3 392 70.7
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 2.8e-158 562.8 558 56.5
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 3.5e-156 555.8 434 65.4
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 4.5e-156 555.4 453 64.7
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 1.3e-155 553.9 516 58.1
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 7.2e-154 548.1 392 69.9
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.0e-152 542.7 486 58.8
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.5e-151 540.4 607 51.7
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.3e-150 537.3 560 54.3
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 1.7e-147 526.9 419 64.9
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 3.3e-146 522.7 487 56.3
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 7.3e-146 521.5 420 64.5
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 3.0e-144 516.2 411 67.4
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 5.2e-144 515.4 457 58.4
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 7.3e-138 495.0 558 48.4
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 9.5e-138 494.6 454 57.7
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.2e-132 477.6 523 53.0
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 6.2e-129 465.3 437 55.1
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 2.7e-124 449.9 546 48.4
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 9.5e-122 441.4 476 51.1
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 3.4e-119 433.0 467 50.5
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 5.6e-114 415.6 451 54.5
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 1.4e-109 401.0 539 45.5
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 4.6e-108 396.0 357 57.7
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 2.8e-89 333.6 438 45.4
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 5.8e-87 325.9 440 42.3
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 6.5e-86 322.4 287 61.0
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 1.5e-82 311.2 216 71.3
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 1.9e-82 310.8 300 54.3
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 5.0e-78 296.2 406 44.6
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 8.5e-78 295.4 455 40.4
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 1.5e-74 284.6 367 46.0
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 6.3e-65 252.7 244 58.2
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.0e-51 208.8 158 66.5
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 2.3e-51 207.6 187 58.3
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 5.7e-50 203.0 252 46.0
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.6e-47 194.9 159 59.7
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 1.6e-47 194.9 258 45.3
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.7e-47 192.6 258 45.3
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.7e-38 164.9 451 32.6
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.8e-38 163.7 257 42.0
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 3.2e-37 160.6 246 44.7
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.5e-37 159.8 353 33.1
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 8.8e-35 152.5 116 63.8
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 1.5e-34 151.8 242 41.7
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 2.2e-33 147.9 131 61.8
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 2.8e-33 147.5 121 62.8
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 4.1e-32 143.7 97 73.2
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-31 142.1 176 47.7
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.5e-31 140.2 113 63.7
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.5e-31 140.2 104 66.3
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 5.0e-30 136.7 101 67.3
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.1e-29 135.6 101 67.3
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 2.5e-29 134.4 100 62.0
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 3.3e-29 134.0 96 69.8
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 1.1e-24 119.0 116 54.3
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.1e-21 109.0 79 67.1
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 4.7e-20 103.6 248 33.5
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 2.3e-19 101.3 142 45.8
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 1.2e-18 99.0 225 34.2
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 2.6e-18 97.8 225 33.8
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.4e-16 92.0 62 71.0
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 3.2e-16 90.9 153 32.7
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 5.4e-16 90.1 65 67.7
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 7.0e-16 89.7 67 65.7
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 7.0e-16 89.7 94 47.9
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 4.6e-15 87.0 137 41.6
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 4.6e-15 87.0 84 53.6
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 5.8e-10 70.1 121 36.4
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 1.6e-07 62.0 256 30.1
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 2.3e-06 58.2 45 62.2
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 2.3e-06 58.2 45 62.2
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 2.3e-06 58.2 45 62.2
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 3.9e-06 57.4 38 68.4
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 3.9e-06 57.4 38 68.4
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 3.9e-06 57.4 38 68.4
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 3.9e-06 57.4 38 68.4


User provided reference genes

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