Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0772G203 Amborella trichopoda HOM05D003896 ORTHO05D004517 8.9e-49 196.4 87 100.0
Haze_10788 Corylus avellana HOM05D003896 ORTHO05D004517 1.2e-34 149.4 69 94.2
Potri.002G069200 Populus trichocarpa HOM05D003896 ORTHO05D004517 8.0e-34 146.7 69 94.2
C08p17020 Brassica napus HOM05D003896 ORTHO05D004517 1.8e-33 145.6 79 78.5
BolC8t49327H Brassica oleracea HOM05D003896 ORTHO05D004517 1.8e-33 145.6 79 78.5
Aa31LG1G40 Aethionema arabicum HOM05D003702 ORTHO05D004653 2.3e-33 145.2 71 87.3
Actinidia38960 Actinidia chinensis HOM05D003896 ORTHO05D004517 4.0e-33 144.4 69 91.3
BolC5t30061H Brassica oleracea HOM05D003896 ORTHO05D004517 4.0e-33 144.4 72 84.7
Nn1g06112 Nelumbo nucifera HOM05D003896 ORTHO05D004517 4.0e-33 144.4 71 90.1
Aa31LG2G8780 Aethionema arabicum HOM05D003896 ORTHO05D004517 5.2e-33 144.1 70 87.1
Prupe.1G560700 Prunus persica HOM05D003896 ORTHO05D004517 5.2e-33 144.1 79 82.3
BcaC05g25441 Brassica carinata HOM05D003896 ORTHO05D004517 6.8e-33 143.7 69 88.4
Actinidia00232 Actinidia chinensis HOM05D003896 ORTHO05D004517 8.9e-33 143.3 69 91.3
AT1G15120 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 1.2e-32 142.9 69 87.0
Sp1g13460 Schrenkiella parvula HOM05D003896 ORTHO05D004517 1.2e-32 142.9 71 85.9
Aqoxy2G00844 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.5e-32 142.5 71 87.3
AL1G27180 Arabidopsis lyrata HOM05D003896 ORTHO05D004517 1.5e-32 142.5 69 87.0
CARHR015640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 1.5e-32 142.5 69 87.0
Nn5g28709 Nelumbo nucifera HOM05D003896 ORTHO05D004517 1.5e-32 142.5 69 91.3
THA.LOC109116537 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.5e-32 142.5 69 89.9
A08p31730 Brassica napus HOM05D003896 ORTHO05D004517 2.0e-32 142.1 77 79.2
CANSAT11G1560 Cannabis sativa HOM05D003896 ORTHO05D004517 2.0e-32 142.1 69 89.9
MELO3C019495.2 Cucumis melo HOM05D003896 ORTHO05D004517 3.4e-32 141.4 75 81.3
MBI13_g20498_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 3.4e-32 141.4 69 89.9
PGR142G1796 Punica granatum HOM05D003896 ORTHO05D004517 3.4e-32 141.4 69 91.3
BcaB03g14560 Brassica carinata HOM05D003896 ORTHO05D004517 4.4e-32 141.0 69 85.5
BcaC07g38769 Brassica carinata HOM05D003896 ORTHO05D004517 4.4e-32 141.0 69 85.5
BraA08t35095Z Brassica rapa HOM05D003896 ORTHO05D004517 4.4e-32 141.0 69 85.5
CiPaw.05G040300 Carya illinoinensis HOM05D003896 ORTHO05D004517 4.4e-32 141.0 69 89.9
MBI13_g29655_MAGBIO Magnolia biondii HOM05D003896 ORTHO05D004517 4.4e-32 141.0 68 89.7
Sed0019459 Sechium edule HOM05D003896 ORTHO05D004517 4.4e-32 141.0 69 88.4
Sc02g0004100 Simmondsia chinensis HOM05D003896 ORTHO05D004517 4.4e-32 141.0 69 89.9
Atru.chr6.939 Acer truncatum HOM05D003896 ORTHO05D004517 7.5e-32 140.2 71 84.5
Potri.002G069301 Populus trichocarpa HOM05D003896 ORTHO05D004517 7.5e-32 140.2 77 79.2
arahy.Tifrunner.gnm1.ann1.MYBE61 Arachis hypogaea HOM05D003896 ORTHO05D004517 9.8e-32 139.8 71 88.7
Lj6g0000311 Lotus japonicus HOM05D003896 ORTHO05D004517 9.8e-32 139.8 69 89.9
arahy.Tifrunner.gnm1.ann1.Q4HF2T Arachis hypogaea HOM05D003896 ORTHO05D004517 1.3e-31 139.4 69 89.9
Carub.0001s1488 Capsella rubella HOM05D003896 ORTHO05D004517 1.3e-31 139.4 69 84.1
Dinv24242 Davidia involucrata HOM05D003896 ORTHO05D004517 1.3e-31 139.4 75 80.0
Cpa.g.sc2.46 Carica papaya HOM05D003896 ORTHO05D004517 1.7e-31 139.0 77 76.6
TWI14G0008 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.2e-31 138.7 69 87.0
TAR381G0439 Trochodendron aralioides HOM05D003896 ORTHO05D004517 2.2e-31 138.7 69 85.5
BcaB03g13075 Brassica carinata HOM05D003896 ORTHO05D004517 3.7e-31 137.9 69 84.1
CDE04G2322 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 3.7e-31 137.9 69 87.0
FAN13G2961 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.7e-31 137.9 69 87.0
BolC8t52063H Brassica oleracea HOM05D003896 ORTHO05D004517 4.9e-31 137.5 69 82.6
CsaV3_3G018780 Cucumis sativus L. HOM05D003896 ORTHO05D004517 4.9e-31 137.5 69 85.5
RcHm_v2.0_Chr7g0225181 Rosa chinensis HOM05D003896 ORTHO05D004517 4.9e-31 137.5 69 85.5
A02p31670 Brassica napus HOM05D003896 ORTHO05D004517 8.3e-31 136.7 82 74.4
BolC2t10995H Brassica oleracea HOM05D003896 ORTHO05D004517 8.3e-31 136.7 72 81.9
BraA02t08170Z Brassica rapa HOM05D003896 ORTHO05D004517 8.3e-31 136.7 72 80.6
Glyma.08G181800 Glycine max HOM05D003896 ORTHO05D004517 8.3e-31 136.7 69 85.5
Manes.02G178600 Manihot esculenta HOM05D003896 ORTHO05D004517 8.3e-31 136.7 69 87.0
Manes.18G091100 Manihot esculenta HOM05D003896 ORTHO05D004517 8.3e-31 136.7 69 85.5
Sed0011383 Sechium edule HOM05D003896 ORTHO05D004517 8.3e-31 136.7 69 85.5
C02p49010 Brassica napus HOM05D003896 ORTHO05D004517 1.1e-30 136.3 81 74.1
CDE04G0116 Ceratophyllum demersum HOM05D003896 ORTHO05D004517 1.1e-30 136.3 69 87.0
TWI23G0468 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 1.1e-30 136.3 69 84.1
FAN04G1676 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.4e-30 136.0 71 83.1
arahy.Tifrunner.gnm1.ann1.D7TB4J Arachis hypogaea HOM05D003896 ORTHO05D004517 1.9e-30 135.6 69 82.6
arahy.Tifrunner.gnm1.ann1.EN81KK Arachis hypogaea HOM05D003896 ORTHO05D004517 1.9e-30 135.6 69 82.6
FvH4_5g30500 Fragaria vesca HOM05D003896 ORTHO05D004517 1.9e-30 135.6 69 85.5
FAN18G4256 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.9e-30 135.6 69 85.5
Glyma.15G050500 Glycine max HOM05D003896 ORTHO05D004517 1.9e-30 135.6 69 84.1
Thecc.02G044000 Theobroma cacao HOM05D003896 ORTHO05D004517 1.9e-30 135.6 69 85.5
CSS0003096 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 2.4e-30 135.2 69 87.0
CSS0009103 Camellia sinensis var. sinensis HOM05D003896 ORTHO05D004517 2.4e-30 135.2 69 87.0
QL11p018723 Quercus lobata HOM05D003896 ORTHO05D004517 2.4e-30 135.2 68 85.3
Dinv19332 Davidia involucrata HOM05D003896 ORTHO05D004517 3.2e-30 134.8 68 85.3
Eucgr.I02701 Eucalyptus grandis HOM05D003896 ORTHO05D004517 3.2e-30 134.8 69 84.1
Dinv05188 Davidia involucrata HOM05D003896 ORTHO05D004517 4.1e-30 134.4 71 80.3
MD08G1223400 Malus domestica HOM05D003896 ORTHO05D004517 4.1e-30 134.4 69 84.1
Medtr2g008070 Medicago truncatula HOM05D003896 ORTHO05D004517 4.1e-30 134.4 69 84.1
TAR628G1659 Trochodendron aralioides HOM05D003896 ORTHO05D004517 4.1e-30 134.4 69 85.5
vmacro22914 Vaccinium macrocarpon HOM05D003896 ORTHO05D004517 5.4e-30 134.0 69 84.1
EL10Ac1g01528 Beta vulgaris HOM05D003896 ORTHO05D004517 7.0e-30 133.7 71 80.3
CiPaw.06G150500 Carya illinoinensis HOM05D003896 ORTHO05D004517 7.0e-30 133.7 69 85.5
VMungo0540G0553 Vigna mungo HOM05D000025 ORTHO05D000136 7.0e-30 133.7 69 84.1
MD05G1023300 Malus domestica HOM05D003896 ORTHO05D004517 9.2e-30 133.3 72 80.6
BcaB02g06577 Brassica carinata HOM05D003896 ORTHO05D004517 1.2e-29 132.9 65 87.7
A06p11120 Brassica napus HOM05D003896 ORTHO05D004517 1.2e-29 132.9 61 90.2
BraA06t24292Z Brassica rapa HOM05D003896 ORTHO05D004517 1.2e-29 132.9 69 79.7
C05p13240 Brassica napus HOM05D003896 ORTHO05D004517 1.6e-29 132.5 64 84.4
Thhalv10001040m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 1.6e-29 132.5 68 85.3
Potri.005G190901 Populus trichocarpa HOM05D003896 ORTHO05D004517 1.6e-29 132.5 69 81.2
Phvul.006G209400 Phaseolus vulgaris HOM05D003896 ORTHO05D004517 2.1e-29 132.1 69 81.2
Atru.chr13.2169 Acer truncatum HOM05D003896 ORTHO05D004517 2.7e-29 131.7 69 79.7
A09p61560 Brassica napus HOM05D003896 ORTHO05D004517 2.7e-29 131.7 71 76.1
BraA09t41529Z Brassica rapa HOM05D003896 ORTHO05D004517 2.7e-29 131.7 71 76.1
Dinv01060 Davidia involucrata HOM05D003896 ORTHO05D004517 3.5e-29 131.3 69 82.6
FAN17G0735 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.6e-29 131.0 69 81.2
Duzib052G0314 Durio zibethinus HOM05D003896 ORTHO05D004517 6.0e-29 130.6 69 81.2
Sc26g0002640 Simmondsia chinensis HOM05D003896 ORTHO05D004517 7.8e-29 130.2 69 82.6
Aqoxy5G02118 Aquilegia oxysepala HOM05D003896 ORTHO05D004517 1.0e-28 129.8 68 85.3
Os11g0162200 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 1.0e-28 129.8 69 78.3
Gohir.D01G001100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 1.3e-28 129.4 69 81.2
Psat1g218920 Pisum sativum HOM05D003896 ORTHO05D004517 1.3e-28 129.4 69 81.2
THA.LOC109117087 Tarenaya hassleriana HOM05D003896 ORTHO05D004517 1.7e-28 129.0 69 81.2
AUR62035137 Chenopodium quinoa HOM05D003896 ORTHO05D004517 2.3e-28 128.6 70 80.0
AUR62042907 Chenopodium quinoa HOM05D003896 ORTHO05D004517 2.3e-28 128.6 70 80.0
ECA236G2466 Erigeron canadensis HOM05D003896 ORTHO05D004517 2.3e-28 128.6 74 73.0
Gohir.A12G033300 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.3e-28 128.6 69 79.7
Gohir.D12G039500 Gossypium hirsutum HOM05D003896 ORTHO05D004517 2.3e-28 128.6 69 79.7
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 2.3e-28 128.6 60 91.7
Sabra05G0145900 Salix brachista HOM05D003896 ORTHO05D004517 2.3e-28 128.6 61 88.5
CARHR143640 Cardamine hirsuta HOM05D003896 ORTHO05D004517 3.9e-28 127.9 69 79.7
FAN12G2386 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.9e-28 127.9 69 79.7
Thhalv10009667m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 5.1e-28 127.5 62 82.3
TPR.G19749 Trifolium pratense HOM05D003896 ORTHO05D004517 5.1e-28 127.5 67 79.1
FAN03G2302 Fragaria x ananassa HOM05D003896 ORTHO05D004517 6.6e-28 127.1 69 78.3
HanXRQChr11g0337591 Helianthus annuus HOM05D003896 ORTHO05D004517 6.6e-28 127.1 69 78.3
Ciclev10002923m.g Citrus clementina HOM05D003896 ORTHO05D004517 8.6e-28 126.7 72 76.4
Duzib132G0061 Durio zibethinus HOM05D003896 ORTHO05D004517 8.6e-28 126.7 69 81.2
Duzib248G1617 Durio zibethinus HOM05D003896 ORTHO05D004517 1.5e-27 125.9 69 78.3
Peaxi162Scf00067g02527 Petunia axillaris HOM05D003896 ORTHO05D004517 1.5e-27 125.9 69 78.3
Solyc09g074870.4 Solanum lycopersicum HOM05D003896 ORTHO05D004517 1.5e-27 125.9 74 73.0
GSVIVG01034509001 Vitis vinifera HOM05D003896 ORTHO05D004517 1.5e-27 125.9 69 78.3
Sopen09g029690 Solanum pennellii HOM05D003896 ORTHO05D004517 1.9e-27 125.6 69 76.8
C08p45150 Brassica napus HOM05D003896 ORTHO05D004517 2.5e-27 125.2 60 83.3
Manes.18G073709 Manihot esculenta HOM05D003896 ORTHO05D004517 2.5e-27 125.2 69 78.3
Manes.18G090900 Manihot esculenta HOM05D003896 ORTHO05D004517 2.5e-27 125.2 69 78.3
TWI34G0745 Tripterygium wilfordii HOM05D003896 ORTHO05D004517 2.5e-27 125.2 69 78.3
Nitab4.5_0000078g0350 Nicotiana tabacum HOM05D003896 ORTHO05D004517 3.3e-27 124.8 69 75.4
Nitab4.5_0004027g0040 Nicotiana tabacum HOM05D003896 ORTHO05D004517 3.3e-27 124.8 69 75.4
Solyc09g150155.1 Solanum lycopersicum HOM05D003896 ORTHO05D004517 3.3e-27 124.8 82 62.2
Oeu012724.1 Olea europaea HOM05D003896 ORTHO05D004517 4.3e-27 124.4 69 76.8
AagrBONN_evm.TU.Sc2ySwM_228.2620 Anthoceros agrestis HOM05D003896 ORTHO05D004517 5.6e-27 124.0 68 77.9
ECA240G1941 Erigeron canadensis HOM05D003620 ORTHO05D004261 5.6e-27 124.0 73 69.9
Migut.B00649 Erythranthe guttata HOM05D003896 ORTHO05D004517 5.6e-27 124.0 71 73.2
FvH4_7g02900 Fragaria vesca HOM05D003896 ORTHO05D004517 5.6e-27 124.0 69 79.7
Gohir.A01G001400 Gossypium hirsutum HOM05D003896 ORTHO05D004517 5.6e-27 124.0 69 76.8
Hma1.2p1_1800F.1_g302950 Hydrangea macrophylla HOM05D003896 ORTHO05D004517 5.6e-27 124.0 68 77.9
PSO210G7830 Papaver somniferum HOM05D003896 ORTHO05D004517 7.3e-27 123.6 69 79.7
PSO238G0030 Papaver somniferum HOM05D003896 ORTHO05D004517 7.3e-27 123.6 69 79.7
Prupe.8G028000 Prunus persica HOM05D003896 ORTHO05D004517 9.5e-27 123.2 69 78.3
Lsat_1_v5_gn_9_116680 Lactuca sativa HOM05D003896 ORTHO05D004517 1.2e-26 122.9 68 73.5
TAR625G1245 Trochodendron aralioides HOM05D003896 ORTHO05D004517 1.2e-26 122.9 59 88.1
PGSC0003DMG400011391 Solanum tuberosum HOM05D003896 ORTHO05D004517 2.1e-26 122.1 69 72.5
FAN06G4594 Fragaria x ananassa HOM05D003896 ORTHO05D004517 4.7e-26 120.9 69 78.3
unitig_578.g15948 Utricularia gibba HOM05D003896 ORTHO05D004517 6.2e-26 120.6 69 75.4
AT2G01090 Arabidopsis thaliana HOM05D003896 ORTHO05D004517 8.1e-26 120.2 59 83.1
CAN.G339.37 Capsicum annuum HOM05D003896 ORTHO05D004517 1.1e-25 119.8 69 71.0
FAN08G0225 Fragaria x ananassa HOM05D003896 ORTHO05D004517 1.1e-25 119.8 58 86.2
HanXRQChr11g0337581 Helianthus annuus HOM05D003896 ORTHO05D004517 1.4e-25 119.4 72 72.2
Migut.N01017 Erythranthe guttata HOM05D003896 ORTHO05D004517 1.8e-25 119.0 74 68.9
FAN07G2777 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.1e-25 118.2 61 78.7
Mapoly0020s0072 Marchantia polymorpha HOM05D003896 ORTHO05D004517 3.1e-25 118.2 67 71.6
Gorai.002G001600 Gossypium raimondii HOM05D003896 ORTHO05D004517 4.0e-25 117.9 60 81.7
CBR_g10999 Chara braunii HOM05D003896 ORTHO05D004517 8.9e-25 116.7 67 74.6
Gorai.008G041200 Gossypium raimondii HOM05D003896 ORTHO05D004517 3.4e-24 114.8 63 73.0
Zm00001eb202390 Zea mays HOM05D003896 ORTHO05D004517 3.4e-24 114.8 64 71.9
Thecc.08G150500 Theobroma cacao HOM05D003896 ORTHO05D004517 7.5e-24 113.6 69 68.1
Nitab4.5_0005474g0030 Nicotiana tabacum HOM05D003896 ORTHO05D004517 1.7e-23 112.5 61 72.1
SalBow6G5306 Salvia bowleyana HOM05D003896 ORTHO05D004517 2.2e-23 112.1 67 70.1
CAN.G339.36 Capsicum annuum HOM05D000541 ORTHO05D000137 4.9e-23 110.9 61 75.4
Pp3c26_10210 Physcomitrium patens HOM05D003896 ORTHO05D004517 6.4e-23 110.5 65 72.3
Pp3c26_10390 Physcomitrium patens HOM05D003896 ORTHO05D004517 6.4e-23 110.5 65 72.3
COL.COLO4_37834 Corchorus olitorius HOM05D004026 ORTHO05D004712 1.4e-22 109.4 67 70.1
Duzib116G0919 Durio zibethinus HOM05D003896 ORTHO05D004517 4.1e-22 107.8 69 68.1
Peaxi162Scf00152g01234 Petunia axillaris HOM05D003896 ORTHO05D004517 7.1e-22 107.1 98 53.1
CBR_g10998 Chara braunii HOM05D016306 ORTHO05D018315 2.7e-21 105.1 66 66.7
PRCOL_00005271 Prasinoderma coloniale HOM05D003896 ORTHO05D004517 3.5e-21 104.8 72 61.1
Lsat_1_v5_gn_7_79760 Lactuca sativa HOM05D003896 ORTHO05D004517 1.3e-20 102.8 56 71.4
Gorai.013G108600 Gossypium raimondii HOM05D003896 ORTHO05D004517 2.3e-20 102.1 69 66.7
Gohir.A02G111100 Gossypium hirsutum HOM05D003896 ORTHO05D004517 3.0e-20 101.7 69 65.2
Pp3c19_20470 Physcomitrium patens HOM05D003896 ORTHO05D004517 3.0e-20 101.7 62 62.9
Gohir.D03G062900 Gossypium hirsutum HOM05D003896 ORTHO05D004517 6.6e-20 100.5 69 65.2
Nitab4.5_0013344g0010 Nicotiana tabacum HOM05D003896 ORTHO05D004517 3.3e-19 98.2 50 72.0
Zm00001eb139450 Zea mays HOM05D003896 ORTHO05D004517 3.3e-19 98.2 57 70.2
SMO117G0126 Selaginella moellendorffii HOM05D003896 ORTHO05D004517 4.3e-19 97.8 58 67.2
MCO16G078 Micromonas commoda HOM05D003896 ORTHO05D004517 2.4e-17 92.0 68 60.3
Duzib132G0328 Durio zibethinus HOM05D003896 ORTHO05D004517 4.0e-17 91.3 42 90.5
ClCG05G009840 Citrullus lanatus HOM05D003896 ORTHO05D004517 1.5e-16 89.4 41 87.8
Atru.chr6.943 Acer truncatum HOM05D003896 ORTHO05D004517 3.4e-16 88.2 41 87.8
Thhalv10028069m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 2.9e-15 85.1 43 83.7
Thhalv10029056m.g Eutrema salsugineum HOM05D003896 ORTHO05D004517 2.9e-15 85.1 43 83.7
PGSC0003DMG400011392 Solanum tuberosum HOM05D003896 ORTHO05D004517 1.9e-14 82.4 61 59.0
Zm00001eb181710 Zea mays HOM05D003896 ORTHO05D004517 1.6e-13 79.3 69 56.5
Zm00001eb243140 Zea mays HOM05D003896 ORTHO05D004517 3.0e-12 75.1 69 53.6
FAN22G1408 Fragaria x ananassa HOM05D003896 ORTHO05D004517 3.9e-12 74.7 42 73.8
Os02g0541700 Oryza sativa ssp. japonica HOM05D003896 ORTHO05D004517 5.6e-11 70.9 69 52.2
unitig_8.g2965 Utricularia gibba HOM05D003896 ORTHO05D004517 9.6e-11 70.1 35 71.4
COL.COLO4_17923 Corchorus olitorius HOM05D003896 ORTHO05D004517 4.8e-10 67.8 39 74.4
Cfa005572 Carpinus fangiana HOM05D003896 ORTHO05D004517 9.0e-09 63.5 29 96.6
arahy.Tifrunner.gnm1.ann1.13ME4F Arachis hypogaea HOM05D000724 ORTHO05D015426 2.9e-07 58.5 48 56.2


User provided reference genes

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