Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0772G147 Amborella trichopoda HOM05D002789 ORTHO05D003185 1.9e-26 121.7 59 100.0
ATR0772G120 Amborella trichopoda HOM05D002789 ORTHO05D003185 5.9e-20 100.1 52 94.2
ATR0081G064 Amborella trichopoda HOM05D002789 ORTHO05D003185 7.7e-20 99.8 52 90.4
MBI17_g34508_MAGBIO Magnolia biondii HOM05D002789 ORTHO05D003185 6.9e-13 76.6 50 70.0
Aqoxy4G02708 Aquilegia oxysepala HOM05D002789 ORTHO05D003185 1.0e-11 72.8 47 74.5
SGA_v2.0_scaffold7G03993 Striga asiatica HOM05D002789 ORTHO05D003185 1.0e-11 72.8 56 64.3
arahy.Tifrunner.gnm1.ann1.FY23RQ Arachis hypogaea HOM05D002789 ORTHO05D003185 1.7e-11 72.0 50 64.0
Oeu031467.1 Olea europaea HOM05D002789 ORTHO05D003185 3.8e-11 70.9 49 69.4
PGSC0003DMG400026329 Solanum tuberosum HOM05D002789 ORTHO05D003185 3.8e-11 70.9 52 67.3
Eucgr.B01705 Eucalyptus grandis HOM05D002789 ORTHO05D003185 5.0e-11 70.5 50 68.0
Eucgr.L02100 Eucalyptus grandis HOM05D002789 ORTHO05D003185 5.0e-11 70.5 50 68.0
Lsat_1_v5_gn_3_117240 Lactuca sativa HOM05D002789 ORTHO05D003185 5.0e-11 70.5 49 73.5
TAR633G2341 Trochodendron aralioides HOM05D002789 ORTHO05D003185 5.0e-11 70.5 50 68.0
Migut.D02426 Erythranthe guttata HOM05D002789 ORTHO05D003185 6.5e-11 70.1 50 70.0
Cpa.g.sc195.34 Carica papaya HOM05D002789 ORTHO05D003185 8.5e-11 69.7 50 66.0
MELO3C025585.2 Cucumis melo HOM05D002789 ORTHO05D003185 8.5e-11 69.7 46 71.7
SEGI_37198 Sequoiadendron giganteum HOM05D002789 ORTHO05D003185 8.5e-11 69.7 44 75.0
CAN.G745.22 Capsicum annuum HOM05D002789 ORTHO05D003185 1.1e-10 69.3 52 69.2
Eucgr.J00529 Eucalyptus grandis HOM05D002789 ORTHO05D003185 1.1e-10 69.3 50 68.0
SalBow6G4975 Salvia bowleyana HOM05D002789 ORTHO05D003185 1.1e-10 69.3 40 75.0
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 1.1e-10 69.3 47 72.3
arahy.Tifrunner.gnm1.ann1.JG5ZXS Arachis hypogaea HOM05D002789 ORTHO05D003185 1.4e-10 68.9 50 62.0
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 1.4e-10 68.9 49 67.3
ClCG01G011750 Citrullus lanatus HOM05D002789 ORTHO05D003185 1.9e-10 68.6 46 71.7
Lj3g0013127 Lotus japonicus HOM05D002789 ORTHO05D003185 1.9e-10 68.6 50 68.0
Medtr4g052390 Medicago truncatula HOM05D002789 ORTHO05D003185 1.9e-10 68.6 50 70.0
Solyc11g068730.2 Solanum lycopersicum HOM05D002789 ORTHO05D003185 1.9e-10 68.6 42 73.8
Sopen11g027440 Solanum pennellii HOM05D002789 ORTHO05D003185 1.9e-10 68.6 42 73.8
Atru.chr3.3159 Acer truncatum HOM05D002789 ORTHO05D003185 2.5e-10 68.2 50 66.0
ECA240G0368 Erigeron canadensis HOM05D002789 ORTHO05D003185 2.5e-10 68.2 48 64.6
Glyma.12G092300 Glycine max HOM05D002789 ORTHO05D003185 2.5e-10 68.2 50 68.0
MBI17_g11951_MAGBIO Magnolia biondii HOM05D002789 ORTHO05D003185 2.5e-10 68.2 50 64.0
Psat7g186680 Pisum sativum HOM05D002789 ORTHO05D003185 2.5e-10 68.2 50 70.0
QL01p011767 Quercus lobata HOM05D002789 ORTHO05D003185 2.5e-10 68.2 50 64.0
QL01p011774 Quercus lobata HOM05D002789 ORTHO05D003185 2.5e-10 68.2 50 64.0
VMungo1127G1590 Vigna mungo HOM05D002789 ORTHO05D003185 2.5e-10 68.2 43 72.1
TPR.G17206 Trifolium pratense HOM05D002789 ORTHO05D003185 3.2e-10 67.8 50 66.0
Ciclev10028755m.g Citrus clementina HOM05D002789 ORTHO05D003185 4.2e-10 67.4 50 64.0
Eucgr.J00530 Eucalyptus grandis HOM05D002789 ORTHO05D003185 4.2e-10 67.4 47 66.0
PSO339G2912 Papaver somniferum HOM05D002789 ORTHO05D003185 4.2e-10 67.4 46 71.7
Cc01_g08760 Coffea canephora HOM05D002789 ORTHO05D003185 5.5e-10 67.0 50 64.0
CsaV3_1G015110 Cucumis sativus L. HOM05D002789 ORTHO05D003185 5.5e-10 67.0 46 69.6
Gohir.A07G111450 Gossypium hirsutum HOM05D002789 ORTHO05D003185 5.5e-10 67.0 53 64.2
Gohir.D07G115200 Gossypium hirsutum HOM05D002789 ORTHO05D003185 5.5e-10 67.0 53 64.2
PSO384G1444 Papaver somniferum HOM05D002789 ORTHO05D003185 5.5e-10 67.0 46 71.7
Peaxi162Scf00224g00516 Petunia axillaris HOM05D002789 ORTHO05D003185 5.5e-10 67.0 52 63.5
TAR633G2089 Trochodendron aralioides HOM05D002789 ORTHO05D003185 5.5e-10 67.0 40 77.5
Gorai.001G123400 Gossypium raimondii HOM05D002789 ORTHO05D003185 7.2e-10 66.6 53 64.2
Lalb_Chr03g0028301 Lupinus albus HOM05D002789 ORTHO05D003185 7.2e-10 66.6 50 66.0
Prupe.6G137600 Prunus persica HOM05D002789 ORTHO05D003185 7.2e-10 66.6 46 69.6
MSTRG.21025 Avicennia marina HOM05D002789 ORTHO05D003185 9.4e-10 66.2 46 67.4
CANSAT25G2714 Cannabis sativa HOM05D002789 ORTHO05D003185 9.4e-10 66.2 48 62.5
Lj2A971G34 Lonicera japonica HOM05D002789 ORTHO05D003185 9.4e-10 66.2 40 72.5
Lj3g0016839 Lotus japonicus HOM05D002789 ORTHO05D003185 9.4e-10 66.2 42 71.4
Lj3g0020064 Lotus japonicus HOM05D002789 ORTHO05D003185 9.4e-10 66.2 50 66.0
CDE04G3244 Ceratophyllum demersum HOM05D002789 ORTHO05D003185 1.2e-09 65.9 49 63.3
Ca_19445_v3 Cicer arietinum L. HOM05D002789 ORTHO05D003185 1.2e-09 65.9 50 66.0
Dinv22806 Davidia involucrata HOM05D002789 ORTHO05D003185 1.2e-09 65.9 40 72.5
Duzib150G0663 Durio zibethinus HOM05D002789 ORTHO05D003185 1.2e-09 65.9 50 66.0
Glyma.11G180900 Glycine max HOM05D002789 ORTHO05D003185 1.2e-09 65.9 50 66.0
Nitab4.5_0001135g0040 Nicotiana tabacum HOM05D002789 ORTHO05D003185 1.2e-09 65.9 50 66.0
Nitab4.5_0003516g0030 Nicotiana tabacum HOM05D002789 ORTHO05D003185 1.2e-09 65.9 50 66.0
TWI75G0194 Tripterygium wilfordii HOM05D002789 ORTHO05D003185 1.2e-09 65.9 43 67.4
CDE07G0890 Ceratophyllum demersum HOM05D002789 ORTHO05D003185 1.6e-09 65.5 49 63.3
Medtr4g052380 Medicago truncatula HOM05D002789 ORTHO05D003185 1.6e-09 65.5 50 68.0
Os02g0635200 Oryza sativa ssp. japonica HOM05D002789 ORTHO05D003185 1.6e-09 65.5 40 77.5
AL5G22430 Arabidopsis lyrata HOM05D002789 ORTHO05D003185 2.1e-09 65.1 46 65.2
Phvul.011G096700 Phaseolus vulgaris HOM05D002789 ORTHO05D003185 2.1e-09 65.1 43 69.8
QL01p011757 Quercus lobata HOM05D002789 ORTHO05D003185 2.1e-09 65.1 49 61.2
EL10Ac7g16327 Beta vulgaris HOM05D002789 ORTHO05D003185 2.7e-09 64.7 43 62.8
Sed0027695 Sechium edule HOM05D002789 ORTHO05D003185 2.7e-09 64.7 47 63.8
THA.LOC104810929 Tarenaya hassleriana HOM05D002789 ORTHO05D003185 2.7e-09 64.7 53 62.3
TWI79G0289 Tripterygium wilfordii HOM05D002789 ORTHO05D003185 2.7e-09 64.7 43 65.1
HanXRQChr13g0420411 Helianthus annuus HOM05D002789 ORTHO05D003185 3.6e-09 64.3 41 73.2
Ciclev10020864m.g Citrus clementina HOM05D002789 ORTHO05D003185 4.7e-09 63.9 47 61.7
Eucgr.J01565 Eucalyptus grandis HOM05D002789 ORTHO05D003185 4.7e-09 63.9 50 66.0
Sp2g02540 Schrenkiella parvula HOM05D002789 ORTHO05D003185 4.7e-09 63.9 48 60.4
BcaC01g06421 Brassica carinata HOM05D002789 ORTHO05D003185 6.1e-09 63.5 46 63.0
A03p13490 Brassica napus HOM05D002789 ORTHO05D003185 6.1e-09 63.5 46 63.0
C03p15790 Brassica napus HOM05D002789 ORTHO05D003185 6.1e-09 63.5 46 63.0
BolC3t14010H Brassica oleracea HOM05D002789 ORTHO05D003185 6.1e-09 63.5 46 63.0
BraA03t10656Z Brassica rapa HOM05D002789 ORTHO05D003185 6.1e-09 63.5 46 63.0
CiPaw.13G132500 Carya illinoinensis HOM05D002789 ORTHO05D003185 6.1e-09 63.5 50 62.0
MD03G1150700 Malus domestica HOM05D002789 ORTHO05D003185 6.1e-09 63.5 40 70.0
Manes.04G000700 Manihot esculenta HOM05D002789 ORTHO05D003185 6.1e-09 63.5 50 62.0
Nn2g15500 Nelumbo nucifera HOM05D002789 ORTHO05D003185 6.1e-09 63.5 41 70.7
Hund18781 Selenicereus undatus HOM05D002789 ORTHO05D003185 6.1e-09 63.5 43 60.5
unitig_0.g1471 Utricularia gibba HOM05D002789 ORTHO05D003185 6.1e-09 63.5 52 57.7
Thhalv10010504m.g Eutrema salsugineum HOM05D002789 ORTHO05D003185 7.9e-09 63.2 46 60.9
Potri.004G199600 Populus trichocarpa HOM05D002789 ORTHO05D003185 7.9e-09 63.2 50 62.0
Cfa009980 Carpinus fangiana HOM05D002789 ORTHO05D003185 1.0e-08 62.8 40 70.0
CiPaw.13G132600 Carya illinoinensis HOM05D002789 ORTHO05D003185 1.0e-08 62.8 40 70.0
HanXRQChr03g0091481 Helianthus annuus HOM05D002789 ORTHO05D003185 1.0e-08 62.8 41 70.7
Os02g0635000 Oryza sativa ssp. japonica HOM05D002789 ORTHO05D003185 1.0e-08 62.8 49 63.3
Sabra04G0134800 Salix brachista HOM05D002789 ORTHO05D003185 1.0e-08 62.8 50 62.0
GSVIVG01011519001 Vitis vinifera HOM05D002789 ORTHO05D003185 1.0e-08 62.8 39 71.8
GSVIVG01036075001 Vitis vinifera HOM05D002789 ORTHO05D003185 1.0e-08 62.8 40 72.5
Zm00001eb185550 Zea mays HOM05D002789 ORTHO05D003185 1.0e-08 62.8 40 72.5
FvH4_3g25810 Fragaria vesca HOM05D002789 ORTHO05D003185 1.4e-08 62.4 40 70.0
FAN11G3565 Fragaria x ananassa HOM05D002789 ORTHO05D003185 1.4e-08 62.4 40 70.0
FAN16G3412 Fragaria x ananassa HOM05D002789 ORTHO05D003185 1.4e-08 62.4 40 70.0
FAN21G3754 Fragaria x ananassa HOM05D002789 ORTHO05D003185 1.4e-08 62.4 40 70.0
FAN25G2876 Fragaria x ananassa HOM05D002789 ORTHO05D003185 1.4e-08 62.4 40 70.0
RcHm_v2.0_Chr5g0047031 Rosa chinensis HOM05D002789 ORTHO05D003185 1.4e-08 62.4 40 70.0
HPP92_012650 Vanilla planifolia HOM05D002789 ORTHO05D003185 1.4e-08 62.4 45 66.7
CSS0027967 Camellia sinensis var. sinensis HOM05D002789 ORTHO05D003185 1.8e-08 62.0 47 63.8
CSS0031098 Camellia sinensis var. sinensis HOM05D002789 ORTHO05D003185 1.8e-08 62.0 47 63.8
BcaB01g04397 Brassica carinata HOM05D002789 ORTHO05D003185 2.3e-08 61.6 46 60.9
BcaB01g04398 Brassica carinata HOM05D002789 ORTHO05D003185 2.3e-08 61.6 46 60.9
Thhalv10010499m.g Eutrema salsugineum HOM05D002789 ORTHO05D003185 2.3e-08 61.6 46 60.9
Thhalv10023557m.g Eutrema salsugineum HOM05D002789 ORTHO05D003185 2.3e-08 61.6 48 56.2
MD11G1170100 Malus domestica HOM05D002789 ORTHO05D003185 2.3e-08 61.6 40 67.5
Mapoly0069s0046 Marchantia polymorpha HOM05D002789 ORTHO05D003185 2.3e-08 61.6 40 70.0
PGR119G2521 Punica granatum HOM05D002789 ORTHO05D003185 2.3e-08 61.6 42 66.7
Thecc.09G277600 Theobroma cacao HOM05D002789 ORTHO05D003185 2.3e-08 61.6 40 67.5
Sc12g0004700 Simmondsia chinensis HOM05D002789 ORTHO05D003185 3.0e-08 61.2 43 62.8
Dinv22808 Davidia involucrata HOM05D002789 ORTHO05D003185 3.9e-08 60.8 40 67.5
AT3G44300 Arabidopsis thaliana HOM05D002789 ORTHO05D003185 5.1e-08 60.5 46 60.9
AUR62001530 Chenopodium quinoa HOM05D002789 ORTHO05D003185 5.1e-08 60.5 43 60.5
Pp3c21_15520 Physcomitrium patens HOM05D002789 ORTHO05D003185 5.1e-08 60.5 41 68.3
Actinidia37069 Actinidia chinensis HOM05D002789 ORTHO05D003185 6.7e-08 60.1 40 67.5
AL5G22460 Arabidopsis lyrata HOM05D002789 ORTHO05D003185 6.7e-08 60.1 46 56.5
Carub.0007s2680 Capsella rubella HOM05D002789 ORTHO05D003185 6.7e-08 60.1 46 65.2
CARHR059830 Cardamine hirsuta HOM05D002789 ORTHO05D003185 6.7e-08 60.1 46 65.2
CARHR104570 Cardamine hirsuta HOM05D002789 ORTHO05D003185 6.7e-08 60.1 45 60.0
Sc12g0004710 Simmondsia chinensis HOM05D002789 ORTHO05D003185 6.7e-08 60.1 43 62.8
Aa31LG1G13250 Aethionema arabicum HOM05D002789 ORTHO05D003185 8.8e-08 59.7 50 58.0
AL5G22450 Arabidopsis lyrata HOM05D002789 ORTHO05D003185 8.8e-08 59.7 46 58.7
AT3G44320 Arabidopsis thaliana HOM05D002789 ORTHO05D003185 8.8e-08 59.7 46 56.5
Carub.0005s1003 Capsella rubella HOM05D002789 ORTHO05D003185 8.8e-08 59.7 46 56.5
Duzib170G0571 Durio zibethinus HOM05D002789 ORTHO05D003185 8.8e-08 59.7 40 65.0
PGR119G0094 Punica granatum HOM05D002789 ORTHO05D003185 8.8e-08 59.7 40 67.5
SMO114G0037 Selaginella moellendorffii HOM05D002789 ORTHO05D003185 8.8e-08 59.7 43 60.5
GSVIVG01022702001 Vitis vinifera HOM05D002789 ORTHO05D003185 8.8e-08 59.7 39 69.2
GSVIVG01022705001 Vitis vinifera HOM05D002789 ORTHO05D003185 8.8e-08 59.7 39 69.2
GSVIVG01022714001 Vitis vinifera HOM05D002789 ORTHO05D003185 8.8e-08 59.7 39 69.2
GSVIVG01022715001 Vitis vinifera HOM05D002789 ORTHO05D003185 8.8e-08 59.7 39 69.2
GSVIVG01022720001 Vitis vinifera HOM05D002789 ORTHO05D003185 8.8e-08 59.7 39 69.2
GSVIVG01022723001 Vitis vinifera HOM05D002789 ORTHO05D003185 8.8e-08 59.7 39 69.2
BcaB01g01174 Brassica carinata HOM05D002789 ORTHO05D003185 1.1e-07 59.3 46 60.9
BcaB06g28397 Brassica carinata HOM05D002789 ORTHO05D003185 1.1e-07 59.3 46 56.5
BcaB06g28467 Brassica carinata HOM05D002789 ORTHO05D003185 1.1e-07 59.3 46 56.5
BcaC07g40459 Brassica carinata HOM05D002789 ORTHO05D003185 1.1e-07 59.3 46 60.9
A04p23660 Brassica napus HOM05D002789 ORTHO05D003185 1.1e-07 59.3 46 56.5
C04p60110 Brassica napus HOM05D002789 ORTHO05D003185 1.1e-07 59.3 46 56.5
BolC4t27514H Brassica oleracea HOM05D002789 ORTHO05D003185 1.1e-07 59.3 46 56.5
BraA04t17891Z Brassica rapa HOM05D002789 ORTHO05D003185 1.1e-07 59.3 46 56.5
Sp5g16970 Schrenkiella parvula HOM05D002789 ORTHO05D003185 1.1e-07 59.3 46 56.5
Zm00001eb248290 Zea mays HOM05D002789 ORTHO05D003185 1.5e-07 58.9 40 72.5
BNapus_Darmor_BZH_scaffold_38p00740 Brassica napus HOM05D002789 ORTHO05D003185 2.0e-07 58.5 49 59.2
BraA02t05651Z Brassica rapa HOM05D002789 ORTHO05D003185 2.0e-07 58.5 49 59.2
Manes.11G164700 Manihot esculenta HOM05D002789 ORTHO05D003185 2.6e-07 58.2 40 67.5
vmacro14336 Vaccinium macrocarpon HOM05D002789 ORTHO05D003185 2.6e-07 58.2 49 57.1
AL6G33310 Arabidopsis lyrata HOM05D002789 ORTHO05D003185 3.3e-07 57.8 43 55.8
Duzib168G1289 Durio zibethinus HOM05D002789 ORTHO05D003185 3.3e-07 57.8 40 65.0
vmacro14337 Vaccinium macrocarpon HOM05D002789 ORTHO05D003185 3.3e-07 57.8 50 56.0
Thhalv10013949m.g Eutrema salsugineum HOM05D002789 ORTHO05D003185 4.4e-07 57.4 49 57.1
Sp6g22940 Schrenkiella parvula HOM05D002789 ORTHO05D003185 4.4e-07 57.4 50 56.0
AT3G44310 Arabidopsis thaliana HOM05D002789 ORTHO05D003185 5.7e-07 57.0 46 58.7
BcaB05g22734 Brassica carinata HOM05D002789 ORTHO05D003185 5.7e-07 57.0 46 58.7
BcaC03g13874 Brassica carinata HOM05D002789 ORTHO05D003185 5.7e-07 57.0 49 57.1
A02p03980 Brassica napus HOM05D002789 ORTHO05D003185 5.7e-07 57.0 46 58.7
C02p10810 Brassica napus HOM05D002789 ORTHO05D003185 5.7e-07 57.0 49 57.1
BolC2t07149H Brassica oleracea HOM05D002789 ORTHO05D003185 5.7e-07 57.0 49 57.1
BraA02t05362Z Brassica rapa HOM05D002789 ORTHO05D003185 5.7e-07 57.0 46 58.7
Carub.0005s1002 Capsella rubella HOM05D002789 ORTHO05D003185 5.7e-07 57.0 46 56.5
Carub.0006s2004 Capsella rubella HOM05D002789 ORTHO05D003185 5.7e-07 57.0 51 52.9
GSVIVG01022719001 Vitis vinifera HOM05D002789 ORTHO05D003185 5.7e-07 57.0 39 66.7
CARHR191250 Cardamine hirsuta HOM05D002789 ORTHO05D003185 9.7e-07 56.2 40 60.0
AT5G22300 Arabidopsis thaliana HOM05D002789 ORTHO05D003185 1.3e-06 55.8 45 53.3
Sc06g0007140 Simmondsia chinensis HOM05D002789 ORTHO05D003185 1.3e-06 55.8 43 58.1
BcaC03g18535 Brassica carinata HOM05D002789 ORTHO05D003185 1.7e-06 55.5 46 56.5
C02p08790 Brassica napus HOM05D002789 ORTHO05D003185 1.7e-06 55.5 46 56.5
BolC2t06793H Brassica oleracea HOM05D002789 ORTHO05D003185 1.7e-06 55.5 46 56.5
GSVIVG01022690001 Vitis vinifera HOM05D002789 ORTHO05D003185 1.7e-06 55.5 38 65.8
Aa31LG4G13810 Aethionema arabicum HOM05D002789 ORTHO05D003185 2.2e-06 55.1 40 55.0
SalBow3G2689 Salvia bowleyana HOM05D002789 ORTHO05D003185 2.2e-06 55.1 40 60.0
SalBow3G4101 Salvia bowleyana HOM05D002789 ORTHO05D003185 2.2e-06 55.1 40 60.0
Nitab4.5_0001135g0050 Nicotiana tabacum HOM05D002789 ORTHO05D003185 2.8e-06 54.7 40 67.5
BcaC01g02029 Brassica carinata HOM05D002789 ORTHO05D003185 3.7e-06 54.3 42 54.8
A06p22060 Brassica napus HOM05D002789 ORTHO05D003185 3.7e-06 54.3 42 54.8
C03p69350 Brassica napus HOM05D002789 ORTHO05D003185 3.7e-06 54.3 42 54.8
BolC3t19195H Brassica oleracea HOM05D002789 ORTHO05D003185 3.7e-06 54.3 42 54.8
BraA06t25296Z Brassica rapa HOM05D002789 ORTHO05D003185 3.7e-06 54.3 42 54.8
Sp5g16960 Schrenkiella parvula HOM05D002789 ORTHO05D003185 3.7e-06 54.3 40 60.0
CBR_g36715 Chara braunii HOM05D002789 ORTHO05D003185 6.3e-06 53.5 38 65.8
Rhsim01G0202900 Rhododendron simsii HOM05D002789 ORTHO05D003185 8.2e-06 53.1 42 57.1


User provided reference genes

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