Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0772G099 Amborella trichopoda HOM05D006872 ORTHO05D006261 7.9e-90 334.0 194 100.0
TAR268G0003 Trochodendron aralioides HOM05D006872 ORTHO05D006261 5.2e-25 118.6 190 41.6
TAR633G1261 Trochodendron aralioides HOM05D006872 ORTHO05D006261 4.9e-23 112.1 190 41.1
ATR0124G041 Amborella trichopoda HOM05D006872 ORTHO05D006261 3.2e-22 109.4 97 63.9
Nn6g34756 Nelumbo nucifera HOM05D006872 ORTHO05D006261 7.1e-22 108.2 187 39.0
MBI17_g00990_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 1.1e-19 100.9 191 39.8
Nn2g14262 Nelumbo nucifera HOM05D006872 ORTHO05D006261 1.9e-19 100.1 188 38.3
COL.COLO4_29613 Corchorus olitorius HOM05D006872 ORTHO05D006261 2.8e-18 96.3 184 38.6
Gohir.D01G192400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 1.1e-17 94.4 188 34.0
Gohir.A01G202400 Gossypium hirsutum HOM05D006872 ORTHO05D006261 5.2e-17 92.0 188 33.5
Gorai.002G236200 Gossypium raimondii HOM05D006872 ORTHO05D006261 6.9e-17 91.7 120 42.5
Thecc.05G100900 Theobroma cacao HOM05D006872 ORTHO05D006261 6.9e-17 91.7 138 42.8
Manes.08G031500 Manihot esculenta HOM05D006872 ORTHO05D006261 8.9e-17 91.3 193 34.2
Aqoxy4G02683 Aquilegia oxysepala HOM05D006872 ORTHO05D006261 4.4e-16 89.0 188 36.2
Duzib106G0826 Durio zibethinus HOM05D006872 ORTHO05D006261 5.8e-16 88.6 189 33.3
Actinidia07935 Actinidia chinensis HOM05D006872 ORTHO05D006261 4.9e-15 85.5 141 42.6
Ciclev10013044m.g Citrus clementina HOM05D006872 ORTHO05D006261 6.4e-15 85.1 136 42.6
Duzib128G0031 Durio zibethinus HOM05D006872 ORTHO05D006261 6.4e-15 85.1 190 34.7
CANSAT64G1977 Cannabis sativa HOM05D006872 ORTHO05D006261 8.4e-15 84.7 205 35.1
PSO384G3916 Papaver somniferum HOM05D006872 ORTHO05D006261 8.4e-15 84.7 184 35.9
Atru.chr8.1395 Acer truncatum HOM05D006872 ORTHO05D006261 2.4e-14 83.2 143 39.2
Hma1.2p1_1442F.1_g283790 Hydrangea macrophylla HOM05D006872 ORTHO05D006261 2.4e-14 83.2 179 38.0
Potri.016G072500 Populus trichocarpa HOM05D006872 ORTHO05D006261 2.4e-14 83.2 186 32.3
ECA238G4730 Erigeron canadensis HOM05D006872 ORTHO05D006261 3.2e-14 82.8 65 60.0
PSO339G3041 Papaver somniferum HOM05D006872 ORTHO05D006261 4.2e-14 82.4 184 35.3
ClCG10G018510 Citrullus lanatus HOM05D006872 ORTHO05D006261 5.4e-14 82.0 143 40.6
Sabra06G0158200 Salix brachista HOM05D006872 ORTHO05D006261 5.4e-14 82.0 185 33.0
Sopen01g003310 Solanum pennellii HOM05D006872 ORTHO05D006261 7.1e-14 81.6 129 38.8
MBI01_g17601_MAGBIO Magnolia biondii HOM05D006872 ORTHO05D006261 9.3e-14 81.3 114 48.2
Sabra16G0075400 Salix brachista HOM05D006872 ORTHO05D006261 9.3e-14 81.3 186 32.3
Lsat_1_v5_gn_2_55301 Lactuca sativa HOM05D006872 ORTHO05D006261 2.1e-13 80.1 142 37.3
HanXRQChr15g0494731 Helianthus annuus HOM05D006872 ORTHO05D006261 2.7e-13 79.7 146 37.7
Solyc01g007770.2 Solanum lycopersicum HOM05D006872 ORTHO05D006261 2.7e-13 79.7 129 38.0
PGSC0003DMG400016417 Solanum tuberosum HOM05D006872 ORTHO05D006261 2.7e-13 79.7 129 38.8
MELO3C009518.2 Cucumis melo HOM05D006872 ORTHO05D006261 6.0e-13 78.6 141 42.6
CsaV3_3G037750 Cucumis sativus L. HOM05D006872 ORTHO05D006261 6.0e-13 78.6 129 39.5
Potri.006G205200 Populus trichocarpa HOM05D006872 ORTHO05D006261 6.0e-13 78.6 185 33.0
ECA233G2821 Erigeron canadensis HOM05D001423 ORTHO05D001412 7.8e-13 78.2 68 54.4
Sed0018559 Sechium edule HOM05D006872 ORTHO05D006261 1.3e-12 77.4 139 39.6
PGR004G0970 Punica granatum HOM05D006872 ORTHO05D006261 1.7e-12 77.0 140 40.7
Sed0000741 Sechium edule HOM05D006872 ORTHO05D006261 2.3e-12 76.6 191 36.1
Rhsim04G0129900 Rhododendron simsii HOM05D006872 ORTHO05D006261 5.1e-12 75.5 150 39.3
CiPaw.09G018900 Carya illinoinensis HOM05D006872 ORTHO05D006261 6.6e-12 75.1 135 39.3
THA.LOC104816611 Tarenaya hassleriana HOM05D006872 ORTHO05D006261 1.1e-11 74.3 135 38.5
Manes.09G048400 Manihot esculenta HOM05D006872 ORTHO05D006261 1.5e-11 73.9 197 31.5
MELO3C024577.2 Cucumis melo HOM05D006872 ORTHO05D006261 4.3e-11 72.4 75 57.3
CsaV3_6G040990 Cucumis sativus L. HOM05D006872 ORTHO05D006261 7.3e-11 71.6 77 55.8
Glyma.19G198100 Glycine max HOM05D006872 ORTHO05D006261 7.3e-11 71.6 126 40.5
Lsat_1_v5_gn_6_35120 Lactuca sativa HOM05D006872 ORTHO05D006261 7.3e-11 71.6 65 52.3
TWI53G1355 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 7.3e-11 71.6 64 57.8
CDE02G4309 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 1.3e-10 70.9 61 62.3
QL07p037475 Quercus lobata HOM05D006872 ORTHO05D006261 1.3e-10 70.9 68 54.4
TWI77G0288 Tripterygium wilfordii HOM05D006872 ORTHO05D006261 2.1e-10 70.1 136 39.0
Sed0014477 Sechium edule HOM05D006872 ORTHO05D006261 4.8e-10 68.9 183 34.4
CiPaw.10G015400 Carya illinoinensis HOM05D006872 ORTHO05D006261 6.2e-10 68.6 64 54.7
Lj1g0011262 Lotus japonicus HOM05D006872 ORTHO05D006261 8.1e-10 68.2 130 41.5
MSTRG.26609 Avicennia marina HOM05D006872 ORTHO05D006261 1.1e-09 67.8 138 37.0
Glyma.03G200500 Glycine max HOM05D006872 ORTHO05D006261 1.1e-09 67.8 135 39.3
Psat3g030200 Pisum sativum HOM05D006872 ORTHO05D006261 1.1e-09 67.8 132 36.4
Nitab4.5_0011425g0030 Nicotiana tabacum HOM05D006872 ORTHO05D006261 1.8e-09 67.0 130 35.4
Lalb_Chr20g0111461 Lupinus albus HOM05D006872 ORTHO05D006261 2.4e-09 66.6 98 48.0
Ca_09043_v3 Cicer arietinum L. HOM05D006872 ORTHO05D006261 4.0e-09 65.9 131 37.4
MD14G1036000 Malus domestica HOM05D006872 ORTHO05D006261 4.0e-09 65.9 64 54.7
MD12G1037000 Malus domestica HOM05D006872 ORTHO05D006261 5.3e-09 65.5 59 57.6
FvH4_6g19940 Fragaria vesca HOM05D006872 ORTHO05D006261 9.0e-09 64.7 61 57.4
FAN05G3358 Fragaria x ananassa HOM05D006872 ORTHO05D006261 9.0e-09 64.7 61 57.4
FAN14G4576 Fragaria x ananassa HOM05D006872 ORTHO05D006261 9.0e-09 64.7 61 57.4
FAN05G2500 Fragaria x ananassa HOM05D006872 ORTHO05D006261 1.2e-08 64.3 149 36.2
Medtr7g105820 Medicago truncatula HOM05D006872 ORTHO05D006261 1.2e-08 64.3 137 38.0
HanXRQChr13g0398221 Helianthus annuus HOM05D006872 ORTHO05D006261 2.0e-08 63.5 68 48.5
Migut.L01821 Erythranthe guttata HOM05D006872 ORTHO05D006261 3.4e-08 62.8 59 54.2
Ah.08g210170 Amaranthus hybridus HOM05D006872 ORTHO05D006261 4.5e-08 62.4 174 31.6
Cpa.g.sc104.60 Carica papaya HOM05D006872 ORTHO05D006261 4.5e-08 62.4 198 32.3
CDE11G0740 Ceratophyllum demersum HOM05D006872 ORTHO05D006261 4.5e-08 62.4 61 55.7
Glyma.10G078000 Glycine max HOM05D006872 ORTHO05D006261 4.5e-08 62.4 65 53.8
Lsat_1_v5_gn_5_87380 Lactuca sativa HOM05D006872 ORTHO05D006261 4.5e-08 62.4 61 52.5
Nitab4.5_0000020g0340 Nicotiana tabacum HOM05D006872 ORTHO05D006261 4.5e-08 62.4 64 51.6
Oeu009304.1 Olea europaea HOM05D006872 ORTHO05D006261 4.5e-08 62.4 68 51.5
EL10Ac7g16814 Beta vulgaris HOM05D006872 ORTHO05D006261 9.9e-08 61.2 75 48.0
Aa31sc52G100 Aethionema arabicum HOM05D010494 ORTHO05D006261 1.3e-07 60.8 150 36.0
SalBow5G3820 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.3e-07 60.8 67 49.3
SalBow6G0243 Salvia bowleyana HOM05D006872 ORTHO05D006261 2.9e-07 59.7 68 51.5
Sc20g0006630 Simmondsia chinensis HOM05D006872 ORTHO05D006261 2.9e-07 59.7 74 48.6
Carub.0006s0518 Capsella rubella HOM05D010494 ORTHO05D006261 3.8e-07 59.3 67 50.7
AUR62006268 Chenopodium quinoa HOM05D006872 ORTHO05D006261 4.9e-07 58.9 75 48.0
Phvul.007G269600 Phaseolus vulgaris HOM05D006872 ORTHO05D006261 4.9e-07 58.9 59 55.9
TAR376G1232 Trochodendron aralioides HOM05D007970 ORTHO05D009943 4.9e-07 58.9 140 35.7
AUR62037038 Chenopodium quinoa HOM05D006872 ORTHO05D006261 6.4e-07 58.5 160 35.0
Nn1g08119 Nelumbo nucifera HOM05D006872 ORTHO05D006261 6.4e-07 58.5 67 41.8
TWI31G1200 Tripterygium wilfordii HOM05D007970 ORTHO05D009943 1.1e-06 57.8 66 47.0
SalBow1G1487 Salvia bowleyana HOM05D001517 ORTHO05D001424 1.4e-06 57.4 48 54.2
SalBow1G5428 Salvia bowleyana HOM05D006872 ORTHO05D006261 1.9e-06 57.0 48 54.2
COL.COLO4_36729 Corchorus olitorius HOM05D007970 ORTHO05D009943 2.4e-06 56.6 66 50.0
Manes.11G099100 Manihot esculenta HOM05D007970 ORTHO05D009943 2.4e-06 56.6 67 49.3
Nn5g30844 Nelumbo nucifera HOM05D007970 ORTHO05D006261 3.2e-06 56.2 68 50.0
Thecc.02G055100 Theobroma cacao HOM05D007970 ORTHO05D009943 3.2e-06 56.2 66 50.0
Thhalv10014914m.g Eutrema salsugineum HOM05D010494 ORTHO05D006261 4.2e-06 55.8 140 35.0
Nn4g22751 Nelumbo nucifera HOM05D006872 ORTHO05D006261 4.2e-06 55.8 113 39.8
BolC3t12855H Brassica oleracea HOM05D010494 ORTHO05D006261 5.4e-06 55.5 135 37.0
AT3G52520 Arabidopsis thaliana HOM05D006872 ORTHO05D006261 7.1e-06 55.1 65 50.8
AT5G06280 Arabidopsis thaliana HOM05D010494 ORTHO05D006261 7.1e-06 55.1 66 47.0
Dinv41914 Davidia involucrata HOM05D007970 ORTHO05D009943 7.1e-06 55.1 68 50.0
Gohir.A04G131900 Gossypium hirsutum HOM05D007970 ORTHO05D009943 7.1e-06 55.1 59 50.8
A04p06870 Brassica napus HOM05D006872 ORTHO05D006261 9.3e-06 54.7 63 54.0
BraA04t16387Z Brassica rapa HOM05D006872 ORTHO05D006261 9.3e-06 54.7 63 54.0
FvH4_2g15690 Fragaria vesca HOM05D007970 ORTHO05D009943 9.3e-06 54.7 59 52.5
FAN09G3456 Fragaria x ananassa HOM05D006872 ORTHO05D006261 9.3e-06 54.7 60 48.3
FAN15G0059 Fragaria x ananassa HOM05D007970 ORTHO05D009943 9.3e-06 54.7 59 52.5
FAN24G2575 Fragaria x ananassa HOM05D007970 ORTHO05D009943 9.3e-06 54.7 59 52.5


User provided reference genes

Program Settings