Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 5.5e-267 923.7 459 100.0
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 1.1e-187 660.2 462 72.5
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 6.5e-183 644.4 464 71.3
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 1.1e-179 633.6 464 69.0
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 5.7e-179 631.3 461 68.5
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 1.7e-178 629.8 461 68.3
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 2.8e-178 629.0 459 68.6
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 6.3e-178 627.9 459 69.3
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 6.3e-178 627.9 463 69.8
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 6.9e-177 624.4 461 69.0
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 1.3e-175 620.2 461 67.9
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 1.7e-175 619.8 462 68.4
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 2.9e-175 619.0 459 69.1
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 6.5e-175 617.8 460 68.7
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 6.5e-175 617.8 461 66.2
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 8.5e-175 617.5 464 68.1
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 8.5e-175 617.5 464 69.0
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 8.5e-175 617.5 459 68.4
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 7.2e-174 614.4 461 68.1
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 7.2e-174 614.4 461 67.9
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 1.2e-173 613.6 461 67.5
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 1.2e-173 613.6 460 67.8
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 1.6e-173 613.2 462 67.7
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 6.1e-173 611.3 461 66.8
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 6.1e-173 611.3 463 68.5
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.0e-172 610.5 462 66.9
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 1.0e-172 610.5 460 67.2
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.0e-172 610.5 462 67.5
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 3.9e-172 608.6 459 68.0
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 8.8e-172 607.4 464 67.0
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 1.5e-171 606.7 462 66.2
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 4.4e-171 605.1 460 66.3
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 5.7e-171 604.7 459 66.0
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 7.4e-171 604.4 464 66.8
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 7.4e-171 604.4 464 67.7
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 1.3e-170 603.6 457 67.6
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 1.3e-170 603.6 461 66.8
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 1.7e-170 603.2 459 66.0
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.7e-170 603.2 460 66.1
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 6.3e-170 601.3 460 65.9
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 6.3e-170 601.3 459 67.5
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 1.1e-169 600.5 460 66.3
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 4.1e-169 598.6 461 66.6
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 9.1e-169 597.4 460 65.4
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 1.6e-168 596.7 459 66.4
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 3.5e-168 595.5 461 66.6
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 4.5e-168 595.1 460 65.7
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 4.5e-168 595.1 460 65.7
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 4.5e-168 595.1 462 66.5
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 7.7e-168 594.3 462 66.2
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 2.9e-167 592.4 462 66.0
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 2.9e-167 592.4 462 66.0
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 6.5e-167 591.3 460 65.2
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.1e-166 590.5 461 64.6
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 1.5e-166 590.1 402 71.6
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 2.5e-166 589.3 465 65.2
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 3.2e-166 589.0 471 64.8
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.1e-165 586.3 462 65.4
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 2.1e-165 586.3 461 65.7
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 2.1e-165 586.3 462 64.9
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 3.6e-165 585.5 461 64.9
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 6.1e-165 584.7 462 64.9
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.4e-164 583.6 462 64.5
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 4.0e-164 582.0 461 64.2
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 4.0e-164 582.0 461 65.1
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 2.0e-163 579.7 461 64.4
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 2.6e-163 579.3 462 64.7
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 2.6e-163 579.3 461 64.6
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 2.6e-163 579.3 461 63.8
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 3.3e-163 578.9 461 64.9
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 1.3e-162 577.0 461 64.4
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 1.7e-162 576.6 461 63.3
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 2.8e-162 575.9 430 68.1
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 2.8e-162 575.9 462 64.9
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 2.8e-162 575.9 468 63.7
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.8e-161 573.2 461 63.1
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 9.1e-161 570.9 475 62.7
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 1.3e-159 567.0 471 63.1
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 1.3e-159 567.0 460 62.8
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 1.7e-159 566.6 461 62.7
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 6.5e-159 564.7 460 62.6
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 8.5e-159 564.3 459 63.8
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.2e-158 562.4 399 68.9
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.5e-158 561.6 462 64.3
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 9.4e-158 560.8 456 62.9
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 9.4e-158 560.8 462 64.1
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 2.7e-157 559.3 461 62.0
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 3.6e-157 558.9 465 62.2
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 6.1e-157 558.1 462 63.0
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 8.8e-156 554.3 466 62.4
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 7.5e-155 551.2 462 62.8
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 9.8e-155 550.8 461 61.2
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 4.8e-154 548.5 461 60.3
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 1.1e-153 547.4 461 60.5
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 1.8e-153 546.6 461 61.0
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 2.4e-153 546.2 461 60.7
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 7.7e-152 541.2 463 60.0
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 1.3e-151 540.4 462 61.0
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 1.7e-151 540.0 461 60.7
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 3.8e-151 538.9 463 58.7
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 6.5e-151 538.1 461 59.4
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 8.5e-151 537.7 463 60.3
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 1.2e-149 533.9 461 59.2
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 1.2e-149 533.9 363 71.6
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 2.8e-149 532.7 461 59.4
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 4.7e-149 531.9 462 60.6
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 2.3e-148 529.6 461 59.0
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 2.3e-148 529.6 461 59.0
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 3.0e-148 529.3 462 61.9
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 4.0e-148 528.9 461 58.6
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 6.8e-148 528.1 461 59.4
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 3.4e-147 525.8 462 59.7
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 6.3e-146 521.5 363 70.8
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 3.1e-145 519.2 467 59.3
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 2.7e-144 516.2 463 57.0
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 5.4e-137 491.9 316 75.3
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 2.7e-136 489.6 464 56.0
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 1.9e-134 483.4 427 56.2
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 3.6e-133 479.2 381 64.8
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 1.4e-132 477.2 313 73.2
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 6.4e-130 468.4 465 52.0
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 2.4e-129 466.5 301 74.1
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 3.2e-129 466.1 302 73.5
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 3.2e-129 466.1 300 73.7
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 1.9e-126 456.8 314 70.4
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 1.6e-125 453.8 472 54.7
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 3.6e-125 452.6 461 51.4
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 1.1e-124 451.1 473 50.5
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 4.0e-124 449.1 461 51.4
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 7.5e-123 444.9 301 70.1
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 3.5e-104 382.9 496 43.3
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 8.7e-103 378.3 258 69.4
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 8.7e-103 378.3 258 69.4
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 1.8e-100 370.5 297 65.3
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.7e-64 249.6 230 60.9
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 1.3e-61 241.5 396 36.9
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 9.8e-30 135.6 193 44.6
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 9.5e-25 119.0 150 42.7
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.0e-23 113.6 87 60.9
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 9.8e-22 109.0 92 69.6
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 2.7e-19 100.9 129 44.2


User provided reference genes

Program Settings