Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0772G060 Amborella trichopoda HOM05D000967 ORTHO05D000796 3.8e-54 214.5 105 100.0
ATR1128G057 Amborella trichopoda HOM05D000967 ORTHO05D000796 1.1e-32 143.3 86 80.2
MBI19_g03682_MAGBIO Magnolia biondii HOM05D000967 ORTHO05D000796 4.2e-13 78.2 90 45.6
RcHm_v2.0_Chr5g0041291 Rosa chinensis HOM05D000967 ORTHO05D000796 2.7e-12 75.5 74 51.4
TAR624G1268 Trochodendron aralioides HOM05D000967 ORTHO05D000796 6.1e-12 74.3 81 51.9
CiPaw.11G194200 Carya illinoinensis HOM05D000967 ORTHO05D000796 1.4e-11 73.2 84 50.0
Eucgr.F00658 Eucalyptus grandis HOM05D000967 ORTHO05D000796 4.0e-11 71.6 80 47.5
TAR627G0215 Trochodendron aralioides HOM05D000967 ORTHO05D000796 8.8e-11 70.5 70 50.0
Aa31LG8G7110 Aethionema arabicum HOM05D000967 ORTHO05D000796 3.4e-10 68.6 75 45.3
MBI16_g26177_MAGBIO Magnolia biondii HOM05D000967 ORTHO05D000796 3.4e-10 68.6 74 45.9
QL08p007346 Quercus lobata HOM05D000967 ORTHO05D000796 3.4e-10 68.6 73 50.7
HPP92_010554 Vanilla planifolia HOM05D000967 ORTHO05D000796 4.4e-10 68.2 84 52.4
CSS0022961 Camellia sinensis var. sinensis HOM05D000967 ORTHO05D000796 9.8e-10 67.0 71 50.7
Cfa020285 Carpinus fangiana HOM05D000967 ORTHO05D000796 9.8e-10 67.0 81 46.9
Aqoxy1G02873 Aquilegia oxysepala HOM05D000967 ORTHO05D000796 1.3e-09 66.6 70 48.6
A03p41670 Brassica napus HOM05D000967 ORTHO05D000796 1.3e-09 66.6 61 49.2
C03p51020 Brassica napus HOM05D000967 ORTHO05D000796 1.3e-09 66.6 61 49.2
BolC3t17386H Brassica oleracea HOM05D000967 ORTHO05D000796 1.3e-09 66.6 61 49.2
BraA03t13320Z Brassica rapa HOM05D000967 ORTHO05D000796 1.3e-09 66.6 61 49.2
CARHR095950 Cardamine hirsuta HOM05D000967 ORTHO05D000796 1.3e-09 66.6 77 48.1
MD11G1210400 Malus domestica HOM05D000967 ORTHO05D000796 1.7e-09 66.2 55 56.4
unitig_747.g21654 Utricularia gibba HOM05D000967 ORTHO05D000796 1.7e-09 66.2 88 44.3
Aqoxy1G02875 Aquilegia oxysepala HOM05D000967 ORTHO05D000796 2.2e-09 65.9 70 48.6
BcaC01g03569 Brassica carinata HOM05D000967 ORTHO05D000796 2.2e-09 65.9 75 45.3
FvH4_3g23460 Fragaria vesca HOM05D000967 ORTHO05D000796 2.2e-09 65.9 74 47.3
FAN11G3882 Fragaria x ananassa HOM05D000967 ORTHO05D000796 2.2e-09 65.9 74 47.3
Sp3g18330 Schrenkiella parvula HOM05D000967 ORTHO05D000796 2.8e-09 65.5 77 46.8
THA.LOC104817849 Tarenaya hassleriana HOM05D000967 ORTHO05D000796 2.8e-09 65.5 61 49.2
MSTRG.14460 Avicennia marina HOM05D000967 ORTHO05D000796 3.7e-09 65.1 88 44.3
Prupe.4G222600 Prunus persica HOM05D000967 ORTHO05D000796 3.7e-09 65.1 60 50.0
Sc16g0005790 Simmondsia chinensis HOM05D000967 ORTHO05D000796 3.7e-09 65.1 87 44.8
TAR629G1524 Trochodendron aralioides HOM05D000967 ORTHO05D000796 3.7e-09 65.1 82 47.6
BraA05t21738Z Brassica rapa HOM05D000967 ORTHO05D000796 4.9e-09 64.7 68 48.5
Cpa.g.sc12.247 Carica papaya HOM05D000967 ORTHO05D000796 4.9e-09 64.7 79 44.3
FAN21G3703 Fragaria x ananassa HOM05D000967 ORTHO05D000796 4.9e-09 64.7 74 45.9
Sed0017625 Sechium edule HOM05D000967 ORTHO05D000796 4.9e-09 64.7 83 44.6
Haze_09737 Corylus avellana HOM05D000967 ORTHO05D000796 8.3e-09 63.9 71 47.9
Thhalv10011484m.g Eutrema salsugineum HOM05D000967 ORTHO05D000796 8.3e-09 63.9 84 36.9
Thhalv10020720m.g Eutrema salsugineum HOM05D000967 ORTHO05D000796 8.3e-09 63.9 77 42.9
PGR004G1054 Punica granatum HOM05D000967 ORTHO05D000796 8.3e-09 63.9 67 49.3
BcaB04g19100 Brassica carinata HOM05D000967 ORTHO05D000796 1.1e-08 63.5 75 44.0
Atru.chr2.3525 Acer truncatum HOM05D000967 ORTHO05D000796 1.4e-08 63.2 76 42.1
Actinidia32278 Actinidia chinensis HOM05D000967 ORTHO05D000796 1.4e-08 63.2 61 49.2
AL3G34020 Arabidopsis lyrata HOM05D000967 ORTHO05D000796 1.4e-08 63.2 81 44.4
A05p28620 Brassica napus HOM05D000967 ORTHO05D000796 1.4e-08 63.2 77 46.8
C05p44020 Brassica napus HOM05D000967 ORTHO05D000796 1.4e-08 63.2 77 46.8
BolC5t33125H Brassica oleracea HOM05D000967 ORTHO05D000796 1.4e-08 63.2 77 46.8
MD11G1210500 Malus domestica HOM05D000967 ORTHO05D000796 1.4e-08 63.2 69 49.3
MSTRG.15777 Avicennia marina HOM05D000967 ORTHO05D000796 1.8e-08 62.8 92 41.3
ClCG09G011030 Citrullus lanatus HOM05D000967 ORTHO05D000796 1.8e-08 62.8 78 43.6
TWI39G0216 Tripterygium wilfordii HOM05D000967 ORTHO05D000796 1.8e-08 62.8 71 46.5
CANSAT11G0627 Cannabis sativa HOM05D000967 ORTHO05D000796 3.1e-08 62.0 76 47.4
CsaV3_7G021170 Cucumis sativus L. HOM05D000967 ORTHO05D000796 3.1e-08 62.0 78 44.9
Migut.M01716 Erythranthe guttata HOM05D000967 ORTHO05D000796 3.1e-08 62.0 90 40.0
MSTRG.12995 Avicennia marina HOM05D000967 ORTHO05D000796 4.1e-08 61.6 70 47.1
Ah.06g182340 Amaranthus hybridus HOM05D000967 ORTHO05D000796 5.4e-08 61.2 84 40.5
Carub.0003s2025 Capsella rubella HOM05D000967 ORTHO05D000796 5.4e-08 61.2 68 47.1
Sed0016238 Sechium edule HOM05D000967 ORTHO05D000796 5.4e-08 61.2 75 42.7
TWI38G2271 Tripterygium wilfordii HOM05D000967 ORTHO05D000796 5.4e-08 61.2 71 45.1
AT3G20300 Arabidopsis thaliana HOM05D000967 ORTHO05D000796 7.0e-08 60.8 82 46.3
Manes.15G066600 Manihot esculenta HOM05D000967 ORTHO05D000796 7.0e-08 60.8 57 49.1
MELO3C013132.2 Cucumis melo HOM05D000967 ORTHO05D000796 9.2e-08 60.5 78 43.6
ECA240G3039 Erigeron canadensis HOM05D000967 ORTHO05D000796 9.2e-08 60.5 66 42.4
BcaB04g20661 Brassica carinata HOM05D000967 ORTHO05D000796 1.2e-07 60.1 83 43.4
A06p03000 Brassica napus HOM05D000967 ORTHO05D000796 1.2e-07 60.1 85 37.6
C06p05770 Brassica napus HOM05D000967 ORTHO05D000796 1.2e-07 60.1 85 37.6
BraA06t23513Z Brassica rapa HOM05D000967 ORTHO05D000796 1.2e-07 60.1 85 37.6
COL.COLO4_09717 Corchorus olitorius HOM05D000001 ORTHO05D000003 1.6e-07 59.7 60 51.7
Migut.M01718 Erythranthe guttata HOM05D000967 ORTHO05D000796 1.6e-07 59.7 90 38.9
Nn1g03355 Nelumbo nucifera HOM05D000967 ORTHO05D000796 1.6e-07 59.7 74 43.2
Hund01968 Selenicereus undatus HOM05D000967 ORTHO05D000796 1.6e-07 59.7 93 40.9
BcaC08g43230 Brassica carinata HOM05D000967 ORTHO05D000796 2.0e-07 59.3 85 37.6
BcaC08g43231 Brassica carinata HOM05D000967 ORTHO05D000796 2.0e-07 59.3 85 37.6
BolC6t35687H Brassica oleracea HOM05D000967 ORTHO05D000796 2.0e-07 59.3 85 37.6
Oeu005995.1 Olea europaea HOM05D000967 ORTHO05D000796 2.0e-07 59.3 86 40.7
Aqoxy1G02874 Aquilegia oxysepala HOM05D000967 ORTHO05D000796 2.7e-07 58.9 71 43.7
BcaB07g33497 Brassica carinata HOM05D000967 ORTHO05D000796 2.7e-07 58.9 66 39.4
BcaC09g48984 Brassica carinata HOM05D000967 ORTHO05D000796 2.7e-07 58.9 82 42.7
A01p34380 Brassica napus HOM05D000967 ORTHO05D000796 2.7e-07 58.9 82 42.7
C01p43820 Brassica napus HOM05D000967 ORTHO05D000796 2.7e-07 58.9 82 42.7
BolC1t04338H Brassica oleracea HOM05D000967 ORTHO05D000796 2.7e-07 58.9 82 42.7
BraA01t03535Z Brassica rapa HOM05D000967 ORTHO05D000796 2.7e-07 58.9 82 42.7
FAN21G2969 Fragaria x ananassa HOM05D000967 ORTHO05D000796 2.7e-07 58.9 59 49.2
Sc05g0009520 Simmondsia chinensis HOM05D000967 ORTHO05D000796 2.7e-07 58.9 90 41.1
AL1G58290 Arabidopsis lyrata HOM05D000967 ORTHO05D000796 3.5e-07 58.5 76 36.8
EL10Ac4g07705 Beta vulgaris HOM05D000967 ORTHO05D000796 3.5e-07 58.5 71 47.9
Os06g0635200 Oryza sativa ssp. japonica HOM05D000967 ORTHO05D000796 3.5e-07 58.5 74 43.2
SGA_v2.0_scaffold171G38909 Striga asiatica HOM05D000967 ORTHO05D000796 3.5e-07 58.5 88 39.8
Zm00001eb387500 Zea mays HOM05D000967 ORTHO05D000796 3.5e-07 58.5 79 44.3
Os02g0566400 Oryza sativa ssp. japonica HOM05D000967 ORTHO05D000796 4.5e-07 58.2 95 36.8
arahy.Tifrunner.gnm1.ann1.HQET6I Arachis hypogaea HOM05D000967 ORTHO05D000796 5.9e-07 57.8 61 44.3
RcHm_v2.0_Chr5g0041311 Rosa chinensis HOM05D000967 ORTHO05D000796 5.9e-07 57.8 65 46.2
Atru.chr10.2309 Acer truncatum HOM05D000967 ORTHO05D000796 7.7e-07 57.4 62 46.8
Ciclev10008348m.g Citrus clementina HOM05D000967 ORTHO05D000796 7.7e-07 57.4 67 50.7
Duzib213G0441 Durio zibethinus HOM05D000967 ORTHO05D000796 7.7e-07 57.4 64 46.9
Prupe.4G222500 Prunus persica HOM05D000967 ORTHO05D000796 7.7e-07 57.4 68 48.5
unitig_8.g4793 Utricularia gibba HOM05D000967 ORTHO05D000796 7.7e-07 57.4 67 46.3
AT1G50630 Arabidopsis thaliana HOM05D000967 ORTHO05D000796 1.0e-06 57.0 88 35.2
arahy.Tifrunner.gnm1.ann1.ZM1B8D Arachis hypogaea HOM05D000967 ORTHO05D000796 1.0e-06 57.0 61 42.6
Glyma.08G321700 Glycine max HOM05D000967 ORTHO05D000796 1.0e-06 57.0 75 41.3
Glyma.18G090800 Glycine max HOM05D000967 ORTHO05D000796 1.0e-06 57.0 75 41.3
Phvul.006G048100 Phaseolus vulgaris HOM05D000967 ORTHO05D000796 1.0e-06 57.0 61 45.9
CARHR040680 Cardamine hirsuta HOM05D000967 ORTHO05D000796 1.3e-06 56.6 80 35.0
Hma1.2p1_1332F.1_g276100 Hydrangea macrophylla HOM05D000967 ORTHO05D000796 1.3e-06 56.6 71 40.8
Lalb_Chr18g0050291 Lupinus albus HOM05D000967 ORTHO05D000796 1.3e-06 56.6 85 41.2
Potri.001G356200 Populus trichocarpa HOM05D000967 ORTHO05D000796 1.3e-06 56.6 74 45.9
Ah.06g182330 Amaranthus hybridus HOM05D000967 ORTHO05D000796 1.7e-06 56.2 76 42.1
Ca_22850_v3 Cicer arietinum L. HOM05D000967 ORTHO05D000796 1.7e-06 56.2 87 41.4
PSO541G3968 Papaver somniferum HOM05D000967 ORTHO05D000796 1.7e-06 56.2 85 40.0
PSO675G9298 Papaver somniferum HOM05D000967 ORTHO05D000796 1.7e-06 56.2 85 40.0
GSVIVG01037714001 Vitis vinifera HOM05D000967 ORTHO05D000796 1.7e-06 56.2 84 42.9
Duzib170G0206 Durio zibethinus HOM05D000967 ORTHO05D000796 2.3e-06 55.8 75 44.0
Migut.H01795 Erythranthe guttata HOM05D000967 ORTHO05D000796 2.3e-06 55.8 67 47.8
Thecc.07G029300 Theobroma cacao HOM05D000967 ORTHO05D000796 2.3e-06 55.8 75 42.7
ECA236G4669 Erigeron canadensis HOM05D000967 ORTHO05D000796 2.9e-06 55.5 63 41.3
FAN25G2344 Fragaria x ananassa HOM05D000967 ORTHO05D000796 2.9e-06 55.5 65 44.6
QL03p008224 Quercus lobata HOM05D000967 ORTHO05D000796 2.9e-06 55.5 60 46.7
QL05p070064 Quercus lobata HOM05D000967 ORTHO05D000796 2.9e-06 55.5 60 46.7
Sp1g37450 Schrenkiella parvula HOM05D000967 ORTHO05D000796 2.9e-06 55.5 87 35.6
GSVIVG01007273001 Vitis vinifera HOM05D000967 ORTHO05D000796 2.9e-06 55.5 60 45.0
Duzib235G0432 Durio zibethinus HOM05D000967 ORTHO05D000796 3.8e-06 55.1 48 52.1
Peaxi162Scf00235g00620 Petunia axillaris HOM05D000967 ORTHO05D000796 5.0e-06 54.7 75 37.3
Prupe.4G013300 Prunus persica HOM05D000967 ORTHO05D000796 5.0e-06 54.7 64 46.9
Hund23202 Selenicereus undatus HOM05D000967 ORTHO05D000796 5.0e-06 54.7 89 39.3
Aa31LG10G3710 Aethionema arabicum HOM05D000967 ORTHO05D000796 6.6e-06 54.3 80 35.0
DCAR_016650 Daucus carota HOM05D000967 ORTHO05D000796 6.6e-06 54.3 71 43.7
Lsat_1_v5_gn_7_114581 Lactuca sativa HOM05D000967 ORTHO05D000796 8.6e-06 53.9 55 45.5
Nitab4.5_0000984g0050 Nicotiana tabacum HOM05D000967 ORTHO05D000796 8.6e-06 53.9 74 36.5
Nitab4.5_0002826g0060 Nicotiana tabacum HOM05D000967 ORTHO05D000796 8.6e-06 53.9 74 37.8


User provided reference genes

Program Settings