Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0772G022 Amborella trichopoda HOM05D006311 ORTHO05D007732 6.4e-100 367.5 193 100.0
MELO3C014513.2 Cucumis melo HOM05D006311 ORTHO05D007732 2.5e-51 206.1 193 59.1
TAR623G0571 Trochodendron aralioides HOM05D006311 ORTHO05D007732 7.2e-51 204.5 198 60.6
MBI17_g18935_MAGBIO Magnolia biondii HOM05D006311 ORTHO05D007732 4.7e-50 201.8 186 62.4
Manes.11G165200 Manihot esculenta HOM05D006311 ORTHO05D007732 4.7e-50 201.8 197 59.9
PSO384G4643 Papaver somniferum HOM05D006311 ORTHO05D007732 6.1e-50 201.4 179 65.4
CsaV3_6G038500 Cucumis sativus L. HOM05D006311 ORTHO05D007732 8.0e-50 201.1 196 58.2
Nn2g14263 Nelumbo nucifera HOM05D006311 ORTHO05D007732 8.0e-50 201.1 200 59.5
Atru.chr3.3143 Acer truncatum HOM05D006311 ORTHO05D007732 3.0e-49 199.1 196 59.2
Solyc11g068790.2 Solanum lycopersicum HOM05D006311 ORTHO05D007732 4.0e-49 198.7 196 60.7
PGSC0003DMG400019619 Solanum tuberosum HOM05D006311 ORTHO05D007732 4.0e-49 198.7 196 60.7
arahy.Tifrunner.gnm1.ann1.INBK63 Arachis hypogaea HOM05D006311 ORTHO05D007732 5.2e-49 198.4 153 69.9
Sopen11g027510 Solanum pennellii HOM05D006311 ORTHO05D007732 5.2e-49 198.4 196 60.7
arahy.Tifrunner.gnm1.ann1.HB0RZJ Arachis hypogaea HOM05D006311 ORTHO05D007732 8.8e-49 197.6 153 69.9
Cpa.g.sc195.39 Carica papaya HOM05D006311 ORTHO05D007732 8.8e-49 197.6 196 57.7
Medtr4g052010 Medicago truncatula HOM05D006311 ORTHO05D007732 8.8e-49 197.6 177 61.6
QL01p011364 Quercus lobata HOM05D006311 ORTHO05D007732 1.5e-48 196.8 192 59.4
Sed0028181 Sechium edule HOM05D006311 ORTHO05D007732 1.5e-48 196.8 181 62.4
MD11G1172600 Malus domestica HOM05D006311 ORTHO05D007732 2.0e-48 196.4 197 56.9
HPP92_023073 Vanilla planifolia HOM05D006311 ORTHO05D007732 2.0e-48 196.4 152 69.7
CiPaw.13G131700 Carya illinoinensis HOM05D006311 ORTHO05D007732 2.6e-48 196.1 204 57.8
TPR.G4615 Trifolium pratense HOM05D006311 ORTHO05D007732 2.6e-48 196.1 187 63.1
PSO339G0926 Papaver somniferum HOM05D006311 ORTHO05D007732 3.4e-48 195.7 195 60.0
Cfa009969 Carpinus fangiana HOM05D006311 ORTHO05D007732 4.4e-48 195.3 162 66.7
Lj3g0006801 Lotus japonicus HOM05D006311 ORTHO05D007732 4.4e-48 195.3 188 60.1
Psat7g187040 Pisum sativum HOM05D006311 ORTHO05D007732 4.4e-48 195.3 176 63.1
PGR119G0707 Punica granatum HOM05D006311 ORTHO05D007732 5.7e-48 194.9 182 63.2
QL01p011627 Quercus lobata HOM05D006311 ORTHO05D007732 5.7e-48 194.9 196 58.2
SEGI_25108 Sequoiadendron giganteum HOM05D006311 ORTHO05D007732 5.7e-48 194.9 139 69.8
ClCG02G022370 Citrullus lanatus HOM05D006311 ORTHO05D007732 9.7e-48 194.1 161 64.6
Nitab4.5_0000893g0010 Nicotiana tabacum HOM05D006311 ORTHO05D007732 9.7e-48 194.1 162 65.4
Thecc.09G276000 Theobroma cacao HOM05D006311 ORTHO05D007732 9.7e-48 194.1 180 61.7
VMungo1127G2206 Vigna mungo HOM05D006311 ORTHO05D007732 9.7e-48 194.1 152 69.7
Lsat_1_v5_gn_2_35940 Lactuca sativa HOM05D006311 ORTHO05D007732 1.3e-47 193.7 147 68.7
Nitab4.5_0001135g0160 Nicotiana tabacum HOM05D006311 ORTHO05D007732 1.7e-47 193.4 195 57.9
Actinidia07269 Actinidia chinensis HOM05D006311 ORTHO05D007732 2.2e-47 193.0 204 58.3
CANSAT54G0913 Cannabis sativa HOM05D006311 ORTHO05D007732 2.2e-47 193.0 195 59.0
CAN.G745.31 Capsicum annuum HOM05D006311 ORTHO05D007732 3.7e-47 192.2 199 56.3
Ciclev10029330m.g Citrus clementina HOM05D006311 ORTHO05D007732 3.7e-47 192.2 194 59.3
Dinv05953 Davidia involucrata HOM05D006311 ORTHO05D007732 3.7e-47 192.2 199 58.8
Glyma.12G093300 Glycine max HOM05D006311 ORTHO05D007732 3.7e-47 192.2 161 65.8
Os04g0416000 Oryza sativa ssp. japonica HOM05D006311 ORTHO05D007732 4.8e-47 191.8 188 60.6
Migut.D02415 Erythranthe guttata HOM05D006311 ORTHO05D007732 8.3e-47 191.0 148 67.6
TWI31G0202 Tripterygium wilfordii HOM05D006311 ORTHO05D007732 8.3e-47 191.0 151 67.5
Duzib150G1639 Durio zibethinus HOM05D006311 ORTHO05D007732 1.1e-46 190.7 143 69.2
Glyma.11G180200 Glycine max HOM05D006311 ORTHO05D007732 1.4e-46 190.3 162 64.8
Aqoxy4G02682 Aquilegia oxysepala HOM05D006311 ORTHO05D007732 1.8e-46 189.9 129 76.7
CSS0008256 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 1.8e-46 189.9 204 55.9
CSS0012591 Camellia sinensis var. sinensis HOM05D006311 ORTHO05D007732 1.8e-46 189.9 204 55.9
Eucgr.J00538 Eucalyptus grandis HOM05D006311 ORTHO05D007732 1.8e-46 189.9 192 57.3
MSTRG.21022 Avicennia marina HOM05D006311 ORTHO05D007732 2.4e-46 189.5 150 67.3
Gohir.D09G097500 Gossypium hirsutum HOM05D006311 ORTHO05D007732 2.4e-46 189.5 201 55.7
COL.COLO4_22654 Corchorus olitorius HOM05D006311 ORTHO05D007732 3.1e-46 189.1 196 56.6
SalBow6G1677 Salvia bowleyana HOM05D006311 ORTHO05D007732 3.1e-46 189.1 175 61.1
Gohir.A09G097700 Gossypium hirsutum HOM05D006311 ORTHO05D007732 4.1e-46 188.7 201 55.7
Gorai.006G114200 Gossypium raimondii HOM05D006311 ORTHO05D007732 4.1e-46 188.7 201 55.7
Oeu048845.1 Olea europaea HOM05D006311 ORTHO05D007732 4.1e-46 188.7 180 59.4
Rhsim01G0202100 Rhododendron simsii HOM05D006311 ORTHO05D007732 4.1e-46 188.7 152 66.4
HanXRQChr14g0433141 Helianthus annuus HOM05D006311 ORTHO05D007732 5.3e-46 188.3 150 66.0
Phvul.011G097600 Phaseolus vulgaris HOM05D006311 ORTHO05D007732 5.3e-46 188.3 183 59.0
Sp4g10100 Schrenkiella parvula HOM05D006311 ORTHO05D007732 5.3e-46 188.3 173 62.4
C04p56680 Brassica napus HOM05D006311 ORTHO05D007732 7.0e-46 188.0 169 60.9
BolC4t27200H Brassica oleracea HOM05D006311 ORTHO05D007732 7.0e-46 188.0 169 60.9
DCAR_010317 Daucus carota HOM05D006311 ORTHO05D007732 1.2e-45 187.2 195 56.4
Sabra09G0126500 Salix brachista HOM05D006311 ORTHO05D007732 1.2e-45 187.2 198 56.6
SGA_v2.0_scaffold7G03983 Striga asiatica HOM05D006311 ORTHO05D007732 1.2e-45 187.2 154 65.6
BcaB06g28142 Brassica carinata HOM05D006311 ORTHO05D007732 1.6e-45 186.8 190 57.4
AUR62001536 Chenopodium quinoa HOM05D006311 ORTHO05D007732 1.6e-45 186.8 157 66.2
Cc01_g08620 Coffea canephora HOM05D006311 ORTHO05D007732 1.6e-45 186.8 164 62.2
Peaxi162Scf00224g00818 Petunia axillaris HOM05D006311 ORTHO05D007732 1.6e-45 186.8 155 65.8
Potri.009G161800 Populus trichocarpa HOM05D006311 ORTHO05D007732 2.0e-45 186.4 204 55.9
ECA238G1364 Erigeron canadensis HOM05D006311 ORTHO05D007732 2.7e-45 186.0 130 71.5
A04p20870 Brassica napus HOM05D006311 ORTHO05D007732 3.5e-45 185.7 191 57.6
BolC4t27194H Brassica oleracea HOM05D006311 ORTHO05D007732 3.5e-45 185.7 193 56.0
RcHm_v2.0_Chr5g0047271 Rosa chinensis HOM05D006311 ORTHO05D007732 3.5e-45 185.7 205 57.1
GSVIVG01036060001 Vitis vinifera HOM05D006311 ORTHO05D007732 3.5e-45 185.7 173 61.3
FAN25G1023 Fragaria x ananassa HOM05D006311 ORTHO05D007732 4.5e-45 185.3 198 58.1
unitig_0.g1470 Utricularia gibba HOM05D006311 ORTHO05D007732 4.5e-45 185.3 148 66.9
Lalb_Chr01g0004961 Lupinus albus HOM05D006311 ORTHO05D007732 5.9e-45 184.9 195 57.4
AUR62020246 Chenopodium quinoa HOM05D006311 ORTHO05D007732 7.7e-45 184.5 134 70.1
FvH4_3g25980 Fragaria vesca HOM05D006311 ORTHO05D007732 1.0e-44 184.1 199 58.8
FAN11G0814 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.0e-44 184.1 199 58.8
FAN21G2836 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.0e-44 184.1 199 57.8
CARHR119830 Cardamine hirsuta HOM05D006311 ORTHO05D007732 1.7e-44 183.3 196 55.1
FAN16G2986 Fragaria x ananassa HOM05D006311 ORTHO05D007732 1.7e-44 183.3 192 57.3
BraA04t17659Z Brassica rapa HOM05D001305 ORTHO05D007732 2.2e-44 183.0 197 52.8
CBR_g30935 Chara braunii HOM05D006311 ORTHO05D007732 2.9e-44 182.6 150 64.0
Ca_19458_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 2.9e-44 182.6 151 66.2
Ca_29924_v3 Cicer arietinum L. HOM05D006311 ORTHO05D007732 2.9e-44 182.6 151 66.2
Pp3c14_19090 Physcomitrium patens HOM05D006311 ORTHO05D007732 3.8e-44 182.2 163 58.3
BcaB01g03062 Brassica carinata HOM05D006311 ORTHO05D007732 5.0e-44 181.8 167 61.7
BcaB01g03063 Brassica carinata HOM05D006311 ORTHO05D007732 5.0e-44 181.8 167 61.7
Sc21g0006890 Simmondsia chinensis HOM05D006311 ORTHO05D007732 6.5e-44 181.4 187 56.1
BcaB06g28139 Brassica carinata HOM05D006311 ORTHO05D007732 8.5e-44 181.0 163 61.3
Hund20941 Selenicereus undatus HOM05D006311 ORTHO05D007732 8.5e-44 181.0 132 71.2
MSTRG.18783 Avicennia marina HOM05D006311 ORTHO05D007732 1.1e-43 180.6 180 60.0
Lalb_Chr03g0028331 Lupinus albus HOM05D006311 ORTHO05D007732 1.1e-43 180.6 152 64.5
vmacro14327 Vaccinium macrocarpon HOM05D006311 ORTHO05D007732 1.9e-43 179.9 131 69.5
Aa31LG5G8700 Aethionema arabicum HOM05D006311 ORTHO05D007732 2.5e-43 179.5 192 57.8
THA.LOC104826442 Tarenaya hassleriana HOM05D006311 ORTHO05D007732 3.2e-43 179.1 201 55.2
AL4G21210 Arabidopsis lyrata HOM05D006311 ORTHO05D007732 5.5e-43 178.3 203 52.7
Mapoly0006s0182 Marchantia polymorpha HOM05D006311 ORTHO05D007732 9.4e-43 177.6 127 71.7
Carub.0004s0790 Capsella rubella HOM05D006311 ORTHO05D007732 1.2e-42 177.2 195 54.4
Thhalv10002100m.g Eutrema salsugineum HOM05D006311 ORTHO05D007732 1.2e-42 177.2 194 54.1
AT2G27290 Arabidopsis thaliana HOM05D006311 ORTHO05D007732 2.7e-42 176.0 203 52.2
SMO146G0331 Selaginella moellendorffii HOM05D006311 ORTHO05D007732 3.6e-42 175.6 127 70.9
EL10Ac7g16320 Beta vulgaris HOM05D006311 ORTHO05D007732 1.0e-41 174.1 131 67.2
CDE02G3359 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 1.8e-41 173.3 118 76.3
Prupe.6G139600 Prunus persica HOM05D006311 ORTHO05D007732 6.3e-39 164.9 196 54.1
Haze_23330 Corylus avellana HOM05D006311 ORTHO05D007732 1.8e-38 163.3 120 73.3
AagrBONN_evm.TU.Sc2ySwM_117.22 Anthoceros agrestis HOM05D006311 ORTHO05D007732 4.1e-38 162.2 186 50.0
Lj1A261G25 Lonicera japonica HOM05D006311 ORTHO05D007732 1.2e-37 160.6 117 70.9
SGA_v2.0_scaffold114G31957 Striga asiatica HOM05D006311 ORTHO05D007732 2.0e-37 159.8 117 71.8
MCO12G429 Micromonas commoda HOM05D006311 ORTHO05D007732 4.2e-35 152.1 127 59.1
Cre12.g485850 Chlamydomonas reinhardtii HOM05D006311 ORTHO05D007732 4.0e-33 145.6 159 52.8
MD03G1152600 Malus domestica HOM05D006311 ORTHO05D007732 5.2e-33 145.2 108 71.3
PRCOL_00001321 Prasinoderma coloniale HOM05D006311 ORTHO05D007732 1.8e-30 136.7 134 56.0
Gohir.D07G115550 Gossypium hirsutum HOM05D006311 ORTHO05D007732 5.9e-29 131.7 86 79.1
Gorai.001G123800 Gossypium raimondii HOM05D006311 ORTHO05D007732 2.3e-28 129.8 86 77.9
Gohir.A07G112050 Gossypium hirsutum HOM05D006311 ORTHO05D007732 5.6e-27 125.2 91 73.6
BcaC02g08251 Brassica carinata HOM05D006311 ORTHO05D007732 4.4e-24 115.5 149 49.7
BcaC02g08253 Brassica carinata HOM05D006311 ORTHO05D007732 2.2e-23 113.2 160 45.6
Zm00001eb422070 Zea mays HOM05D006311 ORTHO05D007732 6.4e-23 111.7 99 61.6
BraA04t17657Z Brassica rapa HOM05D006311 ORTHO05D007732 5.0e-20 102.1 101 56.4
Actinidia24237 Actinidia chinensis HOM05D006311 ORTHO05D007732 2.5e-19 99.8 97 63.9
Oeu009055.1 Olea europaea HOM05D000182 ORTHO05D000112 7.3e-19 98.2 92 58.7
A04p20840 Brassica napus HOM05D006311 ORTHO05D007732 4.0e-17 92.4 93 55.9
CDE08G1250 Ceratophyllum demersum HOM05D006311 ORTHO05D007732 3.7e-15 85.9 57 71.9
Mapoly0036s0025 Marchantia polymorpha HOM05D006047 ORTHO05D007353 2.6e-08 63.2 116 32.8
SGA_v2.0_scaffold80G25840 Striga asiatica HOM05D006047 ORTHO05D007353 9.2e-06 54.7 126 31.7


User provided reference genes

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