Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 9.6e-270 932.9 483 100.0
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 4.5e-158 562.0 486 62.8
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 3.8e-149 532.3 509 57.0
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 5.5e-148 528.5 470 60.6
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 2.1e-147 526.6 471 60.1
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 2.1e-147 526.6 478 60.7
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 1.8e-146 523.5 469 60.3
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 5.1e-146 521.9 473 60.3
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 5.1e-146 521.9 473 61.1
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 3.3e-145 519.2 471 60.5
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 5.6e-145 518.5 477 59.5
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 2.8e-144 516.2 471 60.1
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 1.8e-143 513.5 476 59.2
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 4.0e-143 512.3 472 58.5
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 3.4e-142 509.2 465 58.3
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 3.4e-142 509.2 476 58.0
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 5.8e-142 508.4 471 58.6
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 5.8e-142 508.4 471 59.0
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 2.2e-141 506.5 469 58.2
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 2.2e-141 506.5 475 59.2
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 2.2e-141 506.5 488 58.4
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 2.9e-141 506.1 472 58.3
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 1.1e-140 504.2 465 59.8
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 2.5e-140 503.1 479 57.0
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 7.1e-140 501.5 486 56.8
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 9.3e-140 501.1 474 57.0
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 2.1e-139 500.0 477 58.1
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 3.5e-139 499.2 481 54.7
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 4.6e-139 498.8 474 56.5
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 1.3e-138 497.3 469 58.2
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.8e-138 496.9 476 56.5
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 1.8e-138 496.9 462 59.5
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 3.0e-138 496.1 469 59.3
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 3.9e-138 495.7 475 58.5
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 5.1e-138 495.4 475 56.8
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 5.1e-138 495.4 464 57.3
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 6.7e-138 495.0 474 57.8
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 8.7e-138 494.6 476 56.1
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 8.7e-138 494.6 470 58.9
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 1.5e-137 493.8 464 59.3
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 5.7e-137 491.9 473 57.5
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 5.7e-137 491.9 470 56.6
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 7.4e-137 491.5 486 57.4
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 1.3e-136 490.7 475 55.6
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 3.7e-136 489.2 488 55.3
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 4.8e-136 488.8 447 60.9
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 4.8e-136 488.8 499 55.7
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 6.3e-136 488.4 475 57.3
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 8.2e-136 488.0 473 57.5
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 1.1e-135 487.6 464 56.5
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 1.4e-135 487.3 471 56.7
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 1.4e-135 487.3 470 57.2
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 5.3e-135 485.3 470 55.7
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 6.9e-135 485.0 489 55.4
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 6.9e-135 485.0 469 55.4
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 6.9e-135 485.0 470 57.2
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 9.0e-135 484.6 470 55.3
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 9.0e-135 484.6 474 55.1
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.2e-134 484.2 471 55.6
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 1.5e-134 483.8 493 55.8
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 2.0e-134 483.4 531 53.3
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 4.5e-134 482.3 480 55.8
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 7.7e-134 481.5 472 56.8
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 1.7e-133 480.3 478 55.9
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 1.1e-132 477.6 474 54.9
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 2.1e-131 473.4 477 55.3
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 1.4e-130 470.7 469 54.4
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 2.3e-130 469.9 555 49.7
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 3.9e-130 469.2 495 53.7
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 4.3e-129 465.7 477 54.3
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 5.7e-129 465.3 475 55.6
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 9.7e-129 464.5 468 56.0
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 2.2e-128 463.4 474 53.6
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 4.8e-128 462.2 465 55.5
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 4.5e-126 455.7 464 54.7
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.3e-125 454.1 461 54.7
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 5.0e-125 452.2 461 54.2
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 5.0e-125 452.2 471 53.7
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 2.5e-124 449.9 454 55.9
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 3.2e-124 449.5 466 54.3
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 7.2e-124 448.4 442 55.7
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 9.4e-124 448.0 462 53.5
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 2.1e-123 446.8 461 53.6
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 2.1e-123 446.8 463 54.2
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 2.7e-123 446.4 468 53.4
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 4.7e-123 445.7 468 54.9
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 1.4e-122 444.1 461 53.1
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 2.3e-122 443.4 478 52.9
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 3.0e-122 443.0 461 53.1
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 3.9e-122 442.6 467 52.5
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 5.1e-122 442.2 471 52.4
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 6.7e-122 441.8 461 53.4
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 8.8e-122 441.4 466 52.8
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 2.6e-121 439.9 461 52.7
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 5.7e-121 438.7 461 53.4
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.7e-120 437.2 478 53.1
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 1.7e-120 437.2 477 52.6
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 2.8e-120 436.4 461 52.5
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 1.8e-119 433.7 461 53.1
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 1.8e-119 433.7 461 53.1
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 7.0e-119 431.8 470 54.0
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 2.2e-117 426.8 449 53.5
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 3.7e-112 409.5 412 54.1
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 7.0e-111 405.2 455 52.3
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 1.0e-109 401.4 462 48.7
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 1.2e-107 394.4 376 58.2
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 1.1e-100 371.3 527 42.1
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 2.7e-99 366.7 404 52.0
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 1.4e-98 364.4 490 42.9
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 3.4e-97 359.8 477 45.9
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 5.4e-95 352.4 382 53.4
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.2e-89 334.7 467 44.3
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 7.5e-89 332.0 300 59.3
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 3.9e-85 319.7 331 54.7
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 3.1e-82 310.1 402 49.0
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 6.8e-82 308.9 360 51.7
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 1.1e-79 301.6 604 35.9
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 1.0e-61 241.9 546 33.9
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 3.5e-54 216.9 458 33.0
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 1.9e-52 211.1 470 33.8
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 7.8e-46 189.1 499 31.1
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 2.2e-40 171.0 148 61.5
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 2.3e-37 161.0 103 73.8
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.1e-31 142.1 277 35.4
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 2.3e-29 134.4 262 37.4
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.6e-22 111.7 88 67.0
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 7.9e-22 109.4 186 42.5
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 7.9e-22 109.4 240 34.6
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 2.3e-21 107.8 186 41.9
AL825U10010 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 1.6e-19 101.7 112 47.3
SEGI_05081 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 1.8e-18 98.2 71 63.4
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 3.4e-17 94.0 116 46.6
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 1.0e-16 92.4 85 54.1
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 6.5e-16 89.7 139 43.2
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 4.6e-14 83.6 112 44.6
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 7.4e-12 76.3 114 43.0
CAN.G566.39 Capsicum annuum HOM05D004999 ORTHO05D007513 2.0e-09 68.2 110 40.9
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 4.5e-09 67.0 93 45.2
BolC4t24340H Brassica oleracea HOM05D004999 ORTHO05D024529 1.7e-08 65.1 93 44.1
Migut.C00804 Erythranthe guttata HOM05D004999 ORTHO05D007513 2.9e-08 64.3 39 71.8
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 7.2e-07 59.7 79 48.1
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 1.6e-06 58.5 90 41.1
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 2.7e-06 57.8 59 55.9


User provided reference genes

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