Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 2.9e-103 378.6 200 100.0
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 2.0e-67 259.6 199 67.8
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.2e-66 256.1 202 67.3
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.7e-66 255.4 202 67.3
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.4e-65 253.4 201 66.2
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 3.1e-65 252.3 197 66.5
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 9.1e-65 250.8 196 66.8
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 9.1e-65 250.8 180 68.3
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 2.6e-64 249.2 206 64.1
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.7e-63 246.5 172 69.8
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.7e-63 246.5 202 64.4
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 2.2e-63 246.1 210 61.4
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 3.8e-63 245.4 179 70.4
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 5.0e-63 245.0 180 66.7
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 5.0e-63 245.0 180 67.8
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.9e-62 243.0 180 67.2
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.5e-62 242.7 201 60.2
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 2.5e-62 242.7 205 61.0
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 7.2e-62 241.1 195 64.1
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 7.2e-62 241.1 203 63.1
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 7.2e-62 241.1 176 68.8
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 9.4e-62 240.7 180 66.1
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.6e-61 240.0 204 62.3
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 2.1e-61 239.6 181 66.3
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.7e-61 239.2 201 59.7
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 4.7e-61 238.4 179 66.5
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 6.1e-61 238.0 180 65.6
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 8.0e-61 237.7 192 63.0
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 8.0e-61 237.7 180 68.3
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 1.0e-60 237.3 199 63.8
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 1.0e-60 237.3 200 62.0
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 1.8e-60 236.5 191 65.4
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.3e-60 236.1 194 63.9
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 3.0e-60 235.7 198 64.1
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 3.0e-60 235.7 198 64.1
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 3.0e-60 235.7 196 64.3
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 3.0e-60 235.7 196 61.2
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 3.0e-60 235.7 198 61.6
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 4.0e-60 235.3 199 61.3
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 4.0e-60 235.3 190 64.7
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 6.7e-60 234.6 201 59.7
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 6.7e-60 234.6 201 59.7
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 6.7e-60 234.6 206 60.2
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 6.7e-60 234.6 180 63.3
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 8.8e-60 234.2 179 64.8
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 1.2e-59 233.8 173 67.6
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 1.5e-59 233.4 193 64.8
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 1.5e-59 233.4 193 64.8
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.5e-59 233.4 192 65.1
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 2.6e-59 232.6 181 65.7
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 3.3e-59 232.3 184 62.0
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 4.4e-59 231.9 176 67.6
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 4.4e-59 231.9 193 62.2
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.7e-59 231.5 180 63.3
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 5.7e-59 231.5 181 65.7
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 7.5e-59 231.1 179 63.7
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 7.5e-59 231.1 204 58.3
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 7.5e-59 231.1 201 59.7
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 7.5e-59 231.1 205 61.0
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 7.5e-59 231.1 177 67.8
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 9.7e-59 230.7 180 65.6
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 1.3e-58 230.3 176 66.5
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 2.8e-58 229.2 199 59.8
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 3.7e-58 228.8 179 63.1
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 4.8e-58 228.4 186 62.4
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 6.3e-58 228.0 188 63.3
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 6.3e-58 228.0 178 64.0
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 8.2e-58 227.6 179 63.7
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 8.2e-58 227.6 178 66.3
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.1e-57 227.3 170 68.8
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 1.1e-57 227.3 184 64.1
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.1e-57 227.3 178 63.5
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.4e-57 226.9 174 60.3
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 1.4e-57 226.9 175 61.7
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.4e-57 226.9 210 60.5
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.8e-57 226.5 178 65.7
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 1.8e-57 226.5 177 66.1
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 2.4e-57 226.1 179 62.6
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 2.4e-57 226.1 208 57.7
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.4e-57 226.1 180 63.3
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 4.1e-57 225.3 184 64.1
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 9.1e-57 224.2 205 58.5
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 2.0e-56 223.0 184 64.7
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.7e-56 222.6 175 62.9
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.7e-56 222.6 164 67.7
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 2.7e-56 222.6 164 67.7
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 3.5e-56 222.2 184 62.5
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 4.5e-56 221.9 177 62.7
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 4.5e-56 221.9 179 60.3
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 4.5e-56 221.9 177 64.4
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 5.9e-56 221.5 184 64.7
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.3e-55 220.3 168 63.1
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 6.5e-55 218.0 179 60.9
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.1e-54 217.2 226 57.5
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 2.5e-54 216.1 203 58.6
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 2.5e-54 216.1 180 59.4
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 3.2e-54 215.7 181 61.3
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.2e-54 215.7 196 59.2
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 4.2e-54 215.3 222 50.9
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 7.2e-54 214.5 180 61.1
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 7.2e-54 214.5 178 60.1
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 9.4e-54 214.2 186 58.1
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 1.2e-53 213.8 168 64.3
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 1.2e-53 213.8 168 64.3
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 1.6e-53 213.4 184 62.5
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 3.6e-53 212.2 205 57.1
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 4.7e-53 211.8 178 62.9
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 6.1e-53 211.5 181 59.1
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.0e-52 210.7 186 57.5
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 1.4e-52 210.3 215 53.0
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 1.4e-52 210.3 156 67.3
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.3e-52 209.5 182 57.7
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.3e-52 209.5 157 66.2
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.8e-52 208.0 173 59.5
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 1.2e-51 207.2 154 62.3
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.7e-50 203.4 173 62.4
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.1e-49 200.7 177 62.1
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 2.4e-49 199.5 177 61.6
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 2.0e-48 196.4 198 53.5
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.5e-48 195.3 194 53.1
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.7e-47 193.4 142 64.8
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 2.3e-47 193.0 180 57.8
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 8.6e-47 191.0 195 52.8
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 8.6e-47 191.0 167 56.3
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 7.2e-46 188.0 176 58.5
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 4.7e-45 185.3 168 57.1
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 2.4e-41 172.9 199 47.7
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 9.2e-41 171.0 155 54.8
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 5.0e-39 165.2 130 61.5
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.9e-38 163.3 139 64.7
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 5.2e-36 155.2 190 46.8
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.2e-34 149.8 199 42.2
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.2e-33 146.0 190 45.3
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 2.7e-32 142.9 108 65.7
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 3.9e-31 139.0 152 50.7
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 6.6e-31 138.3 107 64.5
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 8.6e-31 137.9 108 60.2
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 5.6e-30 135.2 93 66.7
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 1.6e-29 133.7 112 63.4
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.1e-28 131.0 84 66.7
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.4e-28 130.6 108 60.2
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 8.9e-28 127.9 97 64.9
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 7.5e-27 124.8 104 60.6
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 2.0e-24 116.7 99 59.6
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 2.3e-20 103.2 89 62.9
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 3.7e-18 95.9 91 58.2
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.1e-17 94.4 140 41.4
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 1.7e-15 87.0 68 64.7
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.4e-12 77.4 63 65.1
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 1.8e-12 77.0 144 33.3
SMO361G0062 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.9e-10 69.7 110 43.6
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 3.8e-10 69.3 74 51.4
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 2.7e-08 63.2 66 48.5
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 3.0e-07 59.7 77 41.6
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 6.6e-07 58.5 51 62.7
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.9e-06 57.0 50 62.0
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 7.3e-06 55.1 66 50.0


User provided reference genes

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