Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0767G165 Amborella trichopoda HOM05D001170 ORTHO05D002759 3.8e-54 214.5 105 100.0
ATR0724G012 Amborella trichopoda HOM05D001170 ORTHO05D002759 1.1e-26 123.2 78 76.9
MBI04_g29831_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D009038 2.7e-23 112.1 86 60.5
Lj3g0006687 Lotus japonicus HOM05D001170 ORTHO05D002759 4.5e-23 111.3 85 62.4
Ca_01086_v3 Cicer arietinum L. HOM05D001170 ORTHO05D002759 7.7e-23 110.5 81 60.5
MBI01_g11878_MAGBIO Magnolia biondii HOM05D001170 ORTHO05D002759 7.7e-23 110.5 75 68.0
vmacro15570 Vaccinium macrocarpon HOM05D001170 ORTHO05D002759 1.0e-22 110.2 84 60.7
TAR636G1119 Trochodendron aralioides HOM05D001170 ORTHO05D002759 2.2e-22 109.0 77 66.2
DCAR_021328 Daucus carota HOM05D001170 ORTHO05D002759 2.9e-22 108.6 81 61.7
Dinv11584 Davidia involucrata HOM05D001170 ORTHO05D002759 2.9e-22 108.6 81 64.2
CSS0022165 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 8.5e-22 107.1 77 66.2
Dinv30210 Davidia involucrata HOM05D001170 ORTHO05D002759 8.5e-22 107.1 81 64.2
SGA_v2.0_scaffold39G15188 Striga asiatica HOM05D001170 ORTHO05D002759 1.1e-21 106.7 75 66.7
Actinidia28998 Actinidia chinensis HOM05D001170 ORTHO05D002759 1.5e-21 106.3 78 65.4
EL10Ac1g01218 Beta vulgaris HOM05D001170 ORTHO05D002759 1.9e-21 105.9 74 66.2
Psat5g300480 Pisum sativum HOM05D001170 ORTHO05D002759 2.5e-21 105.5 87 55.2
TPR.G37160 Trifolium pratense HOM05D001170 ORTHO05D002759 2.5e-21 105.5 87 55.2
PSO210G6149 Papaver somniferum HOM05D001170 ORTHO05D002759 3.2e-21 105.1 76 65.8
CSS0016276 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 4.2e-21 104.8 77 63.6
Haze_03014 Corylus avellana HOM05D001170 ORTHO05D002759 4.2e-21 104.8 81 63.0
Haze_03021 Corylus avellana HOM05D001170 ORTHO05D002759 4.2e-21 104.8 81 63.0
CsaV3_4G001380 Cucumis sativus L. HOM05D001170 ORTHO05D002759 4.2e-21 104.8 79 62.0
ECA234G3104 Erigeron canadensis HOM05D001170 ORTHO05D002759 4.2e-21 104.8 75 60.0
Gorai.011G080700 Gossypium raimondii HOM05D001170 ORTHO05D002759 4.2e-21 104.8 90 57.8
Rhsim02G0062300 Rhododendron simsii HOM05D001170 ORTHO05D002759 4.2e-21 104.8 71 64.8
Thecc.06G074000 Theobroma cacao HOM05D001170 ORTHO05D002759 5.5e-21 104.4 83 61.4
GSVIVG01017244001 Vitis vinifera HOM05D001170 ORTHO05D002759 5.5e-21 104.4 81 60.5
Ah.05g170000 Amaranthus hybridus HOM05D001170 ORTHO05D002759 7.2e-21 104.0 75 61.3
Glyma.08G209900 Glycine max HOM05D001170 ORTHO05D002759 7.2e-21 104.0 85 57.6
HanXRQChr16g0504211 Helianthus annuus HOM05D001170 ORTHO05D002759 7.2e-21 104.0 75 60.0
COL.COLO4_12888 Corchorus olitorius HOM05D001170 ORTHO05D002759 9.4e-21 103.6 77 58.4
Gohir.A10G076500 Gossypium hirsutum HOM05D001170 ORTHO05D002759 9.4e-21 103.6 90 56.7
Lsat_1_v5_gn_1_37260 Lactuca sativa HOM05D001170 ORTHO05D002759 1.2e-20 103.2 72 61.1
TAR383G0630 Trochodendron aralioides HOM05D001170 ORTHO05D002759 1.2e-20 103.2 94 58.5
MELO3C017902.2 Cucumis melo HOM05D001170 ORTHO05D002759 1.6e-20 102.8 79 60.8
Sc09g0002660 Simmondsia chinensis HOM05D001170 ORTHO05D002759 1.6e-20 102.8 73 63.0
Nitab4.5_0000620g0090 Nicotiana tabacum HOM05D001170 ORTHO05D002759 2.1e-20 102.4 73 64.4
Peaxi162Scf00207g00075 Petunia axillaris HOM05D000347 ORTHO05D002759 2.1e-20 102.4 73 64.4
Gohir.D10G074800 Gossypium hirsutum HOM05D001170 ORTHO05D002759 2.7e-20 102.1 90 56.7
Lsat_1_v5_gn_6_117141 Lactuca sativa HOM05D001170 ORTHO05D002759 2.7e-20 102.1 75 57.3
PSO170G1001 Papaver somniferum HOM05D001170 ORTHO05D002759 2.7e-20 102.1 90 55.6
CSS0045002 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 3.6e-20 101.7 68 66.2
CAN.G395.44 Capsicum annuum HOM05D001170 ORTHO05D002759 3.6e-20 101.7 68 66.2
Cfa010927 Carpinus fangiana HOM05D001170 ORTHO05D002759 3.6e-20 101.7 75 61.3
Lj5A68T68 Lonicera japonica HOM05D001170 ORTHO05D002759 3.6e-20 101.7 75 61.3
Prupe.8G067300 Prunus persica HOM05D001170 ORTHO05D002759 3.6e-20 101.7 77 57.1
Aqoxy1G03999 Aquilegia oxysepala HOM05D001170 ORTHO05D002759 4.7e-20 101.3 77 61.0
CiPaw.01G244000 Carya illinoinensis HOM05D001170 ORTHO05D002759 4.7e-20 101.3 81 63.0
CDE01G0177 Ceratophyllum demersum HOM05D001170 ORTHO05D002759 4.7e-20 101.3 75 62.7
Lalb_Chr22g0351021 Lupinus albus HOM05D001170 ORTHO05D002759 4.7e-20 101.3 92 54.3
Manes.04G117000 Manihot esculenta HOM05D001170 ORTHO05D002759 4.7e-20 101.3 72 62.5
Solyc06g067960.3 Solanum lycopersicum HOM05D001170 ORTHO05D002759 4.7e-20 101.3 78 59.0
Sopen06g025240 Solanum pennellii HOM05D001170 ORTHO05D002759 4.7e-20 101.3 78 59.0
MSTRG.334 Avicennia marina HOM05D001170 ORTHO05D002759 6.1e-20 100.9 73 67.1
CSS0029114 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 6.1e-20 100.9 92 55.4
Glyma.13G363100 Glycine max HOM05D001170 ORTHO05D002759 6.1e-20 100.9 77 61.0
PSO407G0198 Papaver somniferum HOM05D001170 ORTHO05D002759 6.1e-20 100.9 71 64.8
SalBow5G2628 Salvia bowleyana HOM05D001170 ORTHO05D002759 6.1e-20 100.9 81 60.5
PGSC0003DMG401028515 Solanum tuberosum HOM05D001170 ORTHO05D002759 6.1e-20 100.9 78 59.0
Hund21294 Selenicereus undatus HOM05D005121 ORTHO05D006115 8.0e-20 100.5 68 66.2
Ciclev10026629m.g Citrus clementina HOM05D001170 ORTHO05D002759 1.0e-19 100.1 75 61.3
HanXRQChr10g0304481 Helianthus annuus HOM05D001170 ORTHO05D002759 1.0e-19 100.1 75 58.7
Prupe.3G079000 Prunus persica HOM05D001170 ORTHO05D002759 1.0e-19 100.1 75 56.0
Atru.chr1.3105 Acer truncatum HOM05D001170 ORTHO05D002759 1.4e-19 99.8 75 58.7
Nn7g37528 Nelumbo nucifera HOM05D001170 ORTHO05D002759 1.4e-19 99.8 88 59.1
QL07p015408 Quercus lobata HOM05D001170 ORTHO05D002759 1.4e-19 99.8 76 61.8
Aqoxy1G02463 Aquilegia oxysepala HOM05D001170 ORTHO05D002759 1.8e-19 99.4 77 59.7
ClCG10G010110 Citrullus lanatus HOM05D001170 ORTHO05D002759 1.8e-19 99.4 79 59.5
Medtr2g103130 Medicago truncatula HOM05D001170 ORTHO05D002759 1.8e-19 99.4 87 51.7
Phvul.010G153500 Phaseolus vulgaris HOM05D001170 ORTHO05D002759 1.8e-19 99.4 86 54.7
Migut.B01277 Erythranthe guttata HOM05D001170 ORTHO05D002759 2.3e-19 99.0 75 60.0
Oeu033463.1 Olea europaea HOM05D001170 ORTHO05D002759 3.0e-19 98.6 81 61.7
CSS0043406 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 4.0e-19 98.2 77 61.0
Cc04_g03980 Coffea canephora HOM05D001170 ORTHO05D002759 4.0e-19 98.2 75 60.0
HPP92_006344 Vanilla planifolia HOM05D001170 ORTHO05D002759 4.0e-19 98.2 69 63.8
PGR102G1290 Punica granatum HOM05D001170 ORTHO05D002759 5.2e-19 97.8 85 56.5
THA.LOC104815538 Tarenaya hassleriana HOM05D001170 ORTHO05D002759 5.2e-19 97.8 73 57.5
VMungo0331G1315 Vigna mungo HOM05D001170 ORTHO05D002759 5.2e-19 97.8 82 54.9
unitig_26.g9275 Utricularia gibba HOM05D001170 ORTHO05D002759 8.8e-19 97.1 69 62.3
C05p50770 Brassica napus HOM05D001170 ORTHO05D002759 1.2e-18 96.7 78 57.7
Carub.0003s1541 Capsella rubella HOM05D001170 ORTHO05D002759 1.2e-18 96.7 80 58.8
Eucgr.D00992 Eucalyptus grandis HOM05D001170 ORTHO05D002759 1.2e-18 96.7 70 60.0
BraA05t22199Z Brassica rapa HOM05D001170 ORTHO05D002759 1.5e-18 96.3 77 58.4
Glyma.07G032600 Glycine max HOM05D001170 ORTHO05D002759 1.5e-18 96.3 85 52.9
Manes.11G052500 Manihot esculenta HOM05D001170 ORTHO05D002759 1.5e-18 96.3 74 63.5
TWI18G1279 Tripterygium wilfordii HOM05D001170 ORTHO05D002759 1.5e-18 96.3 76 59.2
FvH4_6g30390 Fragaria vesca HOM05D001170 ORTHO05D002759 2.0e-18 95.9 79 57.0
FAN14G1569 Fragaria x ananassa HOM05D001170 ORTHO05D002759 2.0e-18 95.9 79 57.0
Hma1.2p1_0515F.1_g170270 Hydrangea macrophylla HOM05D001170 ORTHO05D002759 2.0e-18 95.9 95 52.6
C01p48740 Brassica napus HOM05D001170 ORTHO05D002759 3.4e-18 95.1 81 54.3
Cc05_g02070 Coffea canephora HOM05D001170 ORTHO05D002759 3.4e-18 95.1 69 62.3
FAN05G3026 Fragaria x ananassa HOM05D001170 ORTHO05D002759 3.4e-18 95.1 73 56.2
RcHm_v2.0_Chr2g0136741 Rosa chinensis HOM05D001170 ORTHO05D002759 3.4e-18 95.1 79 55.7
A05p33760 Brassica napus HOM05D001170 ORTHO05D002759 4.4e-18 94.7 77 57.1
CSS0022469 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 4.4e-18 94.7 77 59.7
AUR62027755 Chenopodium quinoa HOM05D001170 ORTHO05D002759 4.4e-18 94.7 74 60.8
FAN09G3438 Fragaria x ananassa HOM05D001170 ORTHO05D002759 5.7e-18 94.4 79 55.7
THA.LOC104818039 Tarenaya hassleriana HOM05D001170 ORTHO05D002759 5.7e-18 94.4 73 56.2
AUR62038520 Chenopodium quinoa HOM05D001170 ORTHO05D002759 9.8e-18 93.6 74 59.5
Sed0018385 Sechium edule HOM05D001170 ORTHO05D002759 9.8e-18 93.6 72 58.3
Duzib192G0175 Durio zibethinus HOM05D001170 ORTHO05D002759 1.3e-17 93.2 79 55.7
Eucgr.D00987 Eucalyptus grandis HOM05D001170 ORTHO05D002759 1.3e-17 93.2 76 57.9
Lj3g0003704 Lotus japonicus HOM05D001170 ORTHO05D002759 1.3e-17 93.2 87 55.2
MD17G1204000 Malus domestica HOM05D001170 ORTHO05D002759 1.3e-17 93.2 81 51.9
Nn3g19222 Nelumbo nucifera HOM05D002802 ORTHO05D003166 1.3e-17 93.2 68 66.2
BcaC09g48547 Brassica carinata HOM05D001170 ORTHO05D002759 1.7e-17 92.8 81 53.1
A01p38430 Brassica napus HOM05D001170 ORTHO05D002759 1.7e-17 92.8 81 53.1
BolC1t04829H Brassica oleracea HOM05D001170 ORTHO05D002759 1.7e-17 92.8 81 53.1
BraA01t03893Z Brassica rapa HOM05D001170 ORTHO05D002759 1.7e-17 92.8 81 53.1
FAN02G4334 Fragaria x ananassa HOM05D001170 ORTHO05D002759 1.7e-17 92.8 79 55.7
Sp3g13960 Schrenkiella parvula HOM05D001170 ORTHO05D002759 1.7e-17 92.8 78 55.1
TWI12G0603 Tripterygium wilfordii HOM05D001170 ORTHO05D002759 1.7e-17 92.8 76 59.2
ECA246G2008 Erigeron canadensis HOM05D001170 ORTHO05D002759 2.2e-17 92.4 75 50.7
Thhalv10021647m.g Eutrema salsugineum HOM05D001170 ORTHO05D002759 2.2e-17 92.4 77 55.8
AL3G28320 Arabidopsis lyrata HOM05D001170 ORTHO05D002759 3.7e-17 91.7 81 58.0
AT3G15660 Arabidopsis thaliana HOM05D001170 ORTHO05D002759 3.7e-17 91.7 80 55.0
CSS0032119 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 6.3e-17 90.9 77 59.7
BcaB04g20909 Brassica carinata HOM05D001170 ORTHO05D002759 1.1e-16 90.1 69 59.4
Aa31LG8G2860 Aethionema arabicum HOM05D001170 ORTHO05D002759 1.8e-16 89.4 77 54.5
TWI12G0482 Tripterygium wilfordii HOM05D001170 ORTHO05D002759 2.4e-16 89.0 72 52.8
CANSAT64G0395 Cannabis sativa HOM05D001170 ORTHO05D002759 3.1e-16 88.6 81 54.3
CARHR090750 Cardamine hirsuta HOM05D001170 ORTHO05D002759 3.1e-16 88.6 69 56.5
Mapoly0037s0022 Marchantia polymorpha HOM05D001170 ORTHO05D002759 7.0e-16 87.4 64 59.4
Potri.003G060600 Populus trichocarpa HOM05D001170 ORTHO05D002759 7.0e-16 87.4 73 57.5
Pp3c3_2430 Physcomitrium patens HOM05D001170 ORTHO05D002759 1.2e-15 86.7 80 51.2
Sabra03G0034800 Salix brachista HOM05D001170 ORTHO05D002759 1.2e-15 86.7 77 53.2
Os01g0530400 Oryza sativa ssp. japonica HOM05D001170 ORTHO05D002759 7.7e-15 84.0 70 54.3
SHI32413 Sapria himalayana HOM05D001170 ORTHO05D002759 1.3e-14 83.2 88 45.5
Pp3c26_14030 Physcomitrium patens HOM05D001170 ORTHO05D002759 3.8e-14 81.6 65 60.0
AagrBONN_evm.TU.Sc2ySwM_362.1014 Anthoceros agrestis HOM05D001170 ORTHO05D002759 1.5e-13 79.7 63 58.7
Zm00001eb336840 Zea mays HOM05D001170 ORTHO05D002759 2.5e-13 79.0 81 49.4
Os01g0174900 Oryza sativa ssp. japonica HOM05D001170 ORTHO05D002759 3.2e-13 78.6 70 51.4
arahy.Tifrunner.gnm1.ann1.18IZSC Arachis hypogaea HOM05D001170 ORTHO05D002759 2.1e-12 75.9 57 57.9
arahy.Tifrunner.gnm1.ann1.5F4UJS Arachis hypogaea HOM05D001170 ORTHO05D002759 2.1e-12 75.9 57 57.9
Zm00001eb424600 Zea mays HOM05D001170 ORTHO05D002759 2.7e-12 75.5 66 48.5
Nitab4.5_0003512g0090 Nicotiana tabacum HOM05D001170 ORTHO05D002759 8.0e-12 73.9 71 53.5
SMO340G0324 Selaginella moellendorffii HOM05D001170 ORTHO05D002759 2.3e-11 72.4 62 48.4
Zm00001eb319160 Zea mays HOM05D001170 ORTHO05D002759 6.8e-11 70.9 66 50.0
ECA248G2451 Erigeron canadensis HOM05D001170 ORTHO05D002666 8.8e-11 70.5 50 64.0
CSS0038997 Camellia sinensis var. sinensis HOM05D001170 ORTHO05D002759 2.0e-10 69.3 74 52.7
MCO03G072 Micromonas commoda HOM05D001170 ORTHO05D002759 1.6e-07 59.7 55 49.1
Cpa.g.sc10.223 Carica papaya HOM05D001170 ORTHO05D002759 7.7e-07 57.4 35 71.4
Cre07.g325600 Chlamydomonas reinhardtii HOM05D001170 ORTHO05D002759 1.7e-06 56.2 60 36.7
TPR.G36142 Trifolium pratense HOM05D001170 ORTHO05D002759 1.7e-06 56.2 38 60.5
SMO347G0493 Selaginella moellendorffii HOM05D001170 ORTHO05D002759 6.6e-06 54.3 43 48.8


User provided reference genes

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