Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0767G115 Amborella trichopoda HOM05D004858 ORTHO05D005600 2.5e-49 198.4 93 100.0
TAR628G1120 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.5e-33 146.0 87 77.0
Cfa006798 Carpinus fangiana HOM05D004858 ORTHO05D005600 3.3e-33 144.8 88 76.1
Haze_03960 Corylus avellana HOM05D004858 ORTHO05D005600 7.3e-33 143.7 98 69.4
Nn5g30705 Nelumbo nucifera HOM05D004858 ORTHO05D005600 6.2e-32 140.6 87 73.6
MBI16_g31809_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 8.1e-32 140.2 87 73.6
CiPaw.08G148200 Carya illinoinensis HOM05D004858 ORTHO05D005600 8.9e-31 136.7 88 71.6
CDE01G0584 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.5e-30 136.0 87 71.3
QL06p038187 Quercus lobata HOM05D004858 ORTHO05D005600 5.8e-30 134.0 88 68.2
CANSAT01G1371 Cannabis sativa HOM05D004858 ORTHO05D005600 7.5e-30 133.7 87 67.8
CiPaw.07G039500 Carya illinoinensis HOM05D004858 ORTHO05D005600 7.5e-30 133.7 88 70.5
Gorai.003G034000 Gossypium raimondii HOM05D004858 ORTHO05D005600 9.8e-30 133.3 88 70.5
arahy.Tifrunner.gnm1.ann1.J6YKXI Arachis hypogaea HOM05D004858 ORTHO05D005600 1.3e-29 132.9 89 70.8
CDE02G3413 Ceratophyllum demersum HOM05D004858 ORTHO05D005600 1.3e-29 132.9 87 70.1
TAR381G0631 Trochodendron aralioides HOM05D004858 ORTHO05D005600 1.3e-29 132.9 87 70.1
Nitab4.5_0026287g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.7e-29 132.5 88 69.3
Glyma.05G110100 Glycine max HOM05D004858 ORTHO05D005600 2.9e-29 131.7 88 71.6
Gohir.D03G032400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.9e-29 131.7 88 70.5
Manes.12G119200 Manihot esculenta HOM05D004858 ORTHO05D005600 2.9e-29 131.7 96 66.7
Peaxi162Scf00118g01314 Petunia axillaris HOM05D004858 ORTHO05D005600 3.7e-29 131.3 87 69.0
Gohir.A02G148000 Gossypium hirsutum HOM05D004858 ORTHO05D005600 4.9e-29 131.0 88 69.3
MBI16_g05028_MAGBIO Magnolia biondii HOM05D004858 ORTHO05D005600 4.9e-29 131.0 84 69.0
Nn6g34570 Nelumbo nucifera HOM05D004858 ORTHO05D005600 4.9e-29 131.0 87 71.3
TWI74G1540 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 6.4e-29 130.6 88 68.2
Glyma.17G157000 Glycine max HOM05D004858 ORTHO05D005600 8.3e-29 130.2 89 74.2
PSO675G0895 Papaver somniferum HOM05D004858 ORTHO05D005600 1.1e-28 129.8 87 66.7
arahy.Tifrunner.gnm1.ann1.YV33P0 Arachis hypogaea HOM05D004858 ORTHO05D005600 1.4e-28 129.4 88 69.3
COL.COLO4_11647 Corchorus olitorius HOM05D004858 ORTHO05D005600 1.4e-28 129.4 88 69.3
Duzib187G0061 Durio zibethinus HOM05D004858 ORTHO05D005600 1.4e-28 129.4 88 69.3
Gohir.A11G210700 Gossypium hirsutum HOM05D004858 ORTHO05D005600 2.4e-28 128.6 88 69.3
Oeu061526.2 Olea europaea HOM05D004858 ORTHO05D005600 3.2e-28 128.3 90 66.7
Aqoxy6G01531 Aquilegia oxysepala HOM05D004858 ORTHO05D005600 4.1e-28 127.9 90 63.3
PGR102G0524 Punica granatum HOM05D004858 ORTHO05D005600 4.1e-28 127.9 87 69.0
MSTRG.23644 Avicennia marina HOM05D004858 ORTHO05D005600 5.4e-28 127.5 92 66.3
THA.LOC104804193 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 5.4e-28 127.5 88 68.2
Ciclev10026828m.g Citrus clementina HOM05D004858 ORTHO05D005600 9.2e-28 126.7 86 72.1
FAN28G0049 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.2e-27 126.3 88 70.5
Potri.007G008800 Populus trichocarpa HOM05D004858 ORTHO05D005600 1.6e-27 125.9 88 64.8
Dinv26980 Davidia involucrata HOM05D004858 ORTHO05D005600 2.1e-27 125.6 82 70.7
Duzib147G0425 Durio zibethinus HOM05D004858 ORTHO05D005600 2.1e-27 125.6 88 67.0
Oeu014311.1 Olea europaea HOM05D004858 ORTHO05D005600 2.1e-27 125.6 94 64.9
Cpa.g.sc129.47 Carica papaya HOM05D004858 ORTHO05D005600 2.7e-27 125.2 88 69.3
FvH4_1g18620 Fragaria vesca HOM05D004858 ORTHO05D005600 4.6e-27 124.4 88 69.3
FAN19G1409 Fragaria x ananassa HOM05D004858 ORTHO05D005600 4.6e-27 124.4 88 69.3
VMungo0251G0206 Vigna mungo HOM05D004858 ORTHO05D005600 4.6e-27 124.4 88 67.0
RcHm_v2.0_Chr2g0109411 Rosa chinensis HOM05D004858 ORTHO05D005600 6.0e-27 124.0 88 68.2
CSS0041224 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 7.8e-27 123.6 87 69.0
CSS0047057 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 7.8e-27 123.6 87 69.0
FAN26G1754 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.0e-26 123.2 88 69.3
Gohir.D11G212400 Gossypium hirsutum HOM05D004858 ORTHO05D005600 1.0e-26 123.2 82 69.5
Gorai.007G228300 Gossypium raimondii HOM05D004858 ORTHO05D005600 1.0e-26 123.2 82 69.5
Manes.13G106700 Manihot esculenta HOM05D004858 ORTHO05D005600 1.3e-26 122.9 95 60.0
Sabra07G0006800 Salix brachista HOM05D004858 ORTHO05D005600 1.3e-26 122.9 92 60.9
GSVIVG01006593001 Vitis vinifera HOM05D004858 ORTHO05D005600 1.3e-26 122.9 87 69.0
FAN23G1848 Fragaria x ananassa HOM05D004858 ORTHO05D005600 1.7e-26 122.5 88 68.2
THA.LOC104807646 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.7e-26 122.5 88 64.8
Atru.chr3.1087 Acer truncatum HOM05D004858 ORTHO05D005600 2.3e-26 122.1 89 68.5
Dinv23069 Davidia involucrata HOM05D004858 ORTHO05D005600 2.3e-26 122.1 87 63.2
MD02G1193900 Malus domestica HOM05D004858 ORTHO05D005600 2.3e-26 122.1 88 65.9
Prupe.6G213100 Prunus persica HOM05D004858 ORTHO05D005600 2.3e-26 122.1 88 64.8
Thecc.01G079800 Theobroma cacao HOM05D004858 ORTHO05D005600 2.3e-26 122.1 88 67.0
Ca_22084_v3 Cicer arietinum L. HOM05D004858 ORTHO05D005600 3.9e-26 121.3 91 64.8
Os03g0772800 Oryza sativa ssp. japonica HOM05D004858 ORTHO05D005600 3.9e-26 121.3 87 64.4
PGSC0003DMG400017913 Solanum tuberosum HOM05D004858 ORTHO05D005600 3.9e-26 121.3 87 63.2
Eucgr.I00649 Eucalyptus grandis HOM05D004858 ORTHO05D005600 5.1e-26 120.9 88 67.0
Psat4g088320 Pisum sativum HOM05D004858 ORTHO05D005600 6.6e-26 120.6 89 68.5
SGA_v2.0_scaffold121G33088 Striga asiatica HOM05D004858 ORTHO05D005600 6.6e-26 120.6 93 65.6
Medtr4g097800 Medicago truncatula HOM05D004858 ORTHO05D005600 8.6e-26 120.2 90 68.9
SalBow3G1594 Salvia bowleyana HOM05D004858 ORTHO05D005600 8.6e-26 120.2 92 63.0
SalBow3G4557 Salvia bowleyana HOM05D004858 ORTHO05D005600 8.6e-26 120.2 92 63.0
THA.LOC104824932 Tarenaya hassleriana HOM05D004858 ORTHO05D005600 1.1e-25 119.8 88 64.8
Carub.0007s0239 Capsella rubella HOM05D004858 ORTHO05D005600 1.5e-25 119.4 88 67.0
Rhsim08G0089100 Rhododendron simsii HOM05D004858 ORTHO05D005600 1.9e-25 119.0 87 62.1
Sp7g35470 Schrenkiella parvula HOM05D004858 ORTHO05D005600 1.9e-25 119.0 88 67.0
DCAR_025838 Daucus carota HOM05D004858 ORTHO05D005600 2.5e-25 118.6 88 65.9
Phvul.003G231600 Phaseolus vulgaris HOM05D004858 ORTHO05D005600 2.5e-25 118.6 88 65.9
Actinidia36402 Actinidia chinensis HOM05D004858 ORTHO05D005600 3.3e-25 118.2 87 63.2
CiPaw.10G150100 Carya illinoinensis HOM05D004858 ORTHO05D005600 3.3e-25 118.2 62 79.0
CsaV3_3G007040 Cucumis sativus L. HOM05D004858 ORTHO05D005600 3.3e-25 118.2 88 67.0
Thhalv10026651m.g Eutrema salsugineum HOM05D004858 ORTHO05D005600 3.3e-25 118.2 88 65.9
ClCG10G008050 Citrullus lanatus HOM05D004858 ORTHO05D005600 4.3e-25 117.9 88 67.0
HanXRQChr09g0263081 Helianthus annuus HOM05D004858 ORTHO05D005600 4.3e-25 117.9 88 63.6
Sc16g0000840 Simmondsia chinensis HOM05D004858 ORTHO05D005600 4.3e-25 117.9 84 66.7
Solyc03g043850.3 Solanum lycopersicum HOM05D004858 ORTHO05D005600 4.3e-25 117.9 87 62.1
AL7G12840 Arabidopsis lyrata HOM05D004858 ORTHO05D005600 5.6e-25 117.5 88 65.9
CARHR246220 Cardamine hirsuta HOM05D004858 ORTHO05D005600 5.6e-25 117.5 88 65.9
EL10Ac6g14949 Beta vulgaris HOM05D004858 ORTHO05D005600 7.3e-25 117.1 84 65.5
TPR.G22417 Trifolium pratense HOM05D004858 ORTHO05D005600 7.3e-25 117.1 90 63.3
unitig_46.g18678 Utricularia gibba HOM05D004858 ORTHO05D005600 9.5e-25 116.7 91 64.8
Lalb_Chr16g0385901 Lupinus albus HOM05D004858 ORTHO05D005600 1.2e-24 116.3 91 62.6
Lalb_Chr09g0329381 Lupinus albus HOM05D004858 ORTHO05D005600 2.1e-24 115.5 91 62.6
Zm00001eb058950 Zea mays HOM05D004858 ORTHO05D005600 2.8e-24 115.2 87 64.4
BcaC01g00373 Brassica carinata HOM05D004858 ORTHO05D005600 3.6e-24 114.8 77 68.8
BolC3t20143H Brassica oleracea HOM05D004858 ORTHO05D005600 3.6e-24 114.8 77 68.8
CSS0011371 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 3.6e-24 114.8 87 67.8
Lj4g0010254 Lotus japonicus HOM05D004858 ORTHO05D005600 6.2e-24 114.0 89 61.8
AT4G37830 Arabidopsis thaliana HOM05D004858 ORTHO05D005600 8.1e-24 113.6 88 63.6
AUR62003145 Chenopodium quinoa HOM05D004858 ORTHO05D005600 1.1e-23 113.2 90 60.0
Cc07_g07610 Coffea canephora HOM05D004858 ORTHO05D005600 1.4e-23 112.8 90 61.1
TWI77G0309 Tripterygium wilfordii HOM05D004858 ORTHO05D005600 1.8e-23 112.5 82 62.2
A08p22870 Brassica napus HOM05D004858 ORTHO05D005600 2.3e-23 112.1 88 62.5
Lalb_Chr05g0220461 Lupinus albus HOM05D004858 ORTHO05D005600 2.3e-23 112.1 91 59.3
Hma1.2p1_1953F.1_g308860 Hydrangea macrophylla HOM05D004858 ORTHO05D005600 3.1e-23 111.7 91 61.5
PGSC0003DMG400030258 Solanum tuberosum HOM05D004858 ORTHO05D005600 3.1e-23 111.7 89 60.7
AUR62007965 Chenopodium quinoa HOM05D004858 ORTHO05D005600 4.0e-23 111.3 90 58.9
Peaxi162Scf00096g01525 Petunia axillaris HOM05D004858 ORTHO05D005600 4.0e-23 111.3 88 63.6
HPP92_024955 Vanilla planifolia HOM05D004858 ORTHO05D005600 5.2e-23 110.9 95 60.0
HanXRQChr14g0447621 Helianthus annuus HOM05D004858 ORTHO05D005600 2.0e-22 109.0 88 58.0
Sed0006730 Sechium edule HOM05D004858 ORTHO05D005600 2.6e-22 108.6 88 61.4
Migut.L00438 Erythranthe guttata HOM05D004858 ORTHO05D005600 4.4e-22 107.8 93 60.2
ECA232G2479 Erigeron canadensis HOM05D004858 ORTHO05D005600 5.8e-22 107.5 90 60.0
unitig_37.g12385 Utricularia gibba HOM05D004858 ORTHO05D005600 5.8e-22 107.5 88 61.4
HanXRQChr07g0203771 Helianthus annuus HOM05D004858 ORTHO05D005600 7.6e-22 107.1 88 56.8
Duzib264G0490 Durio zibethinus HOM05D004858 ORTHO05D005600 9.9e-22 106.7 88 61.4
ECA238G2402 Erigeron canadensis HOM05D004858 ORTHO05D005600 1.3e-21 106.3 88 61.4
Solyc02g091880.4 Solanum lycopersicum HOM05D004858 ORTHO05D005600 3.7e-21 104.8 89 58.4
Sopen02g036450 Solanum pennellii HOM05D004858 ORTHO05D005600 3.7e-21 104.8 89 58.4
Lsat_1_v5_gn_2_81581 Lactuca sativa HOM05D004858 ORTHO05D005600 4.9e-21 104.4 88 55.7
CAN.G1061.6 Capsicum annuum HOM05D004858 ORTHO05D005600 8.4e-21 103.6 89 58.4
C01p01370 Brassica napus HOM05D004858 ORTHO05D005600 1.4e-20 102.8 88 56.8
MD15G1304000 Malus domestica HOM05D004858 ORTHO05D005600 1.4e-20 102.8 88 58.0
Nitab4.5_0007790g0010 Nicotiana tabacum HOM05D004858 ORTHO05D005600 1.9e-20 102.4 89 57.3
Aa31LG6G14730 Aethionema arabicum HOM05D004858 ORTHO05D005600 2.4e-20 102.1 116 50.0
BolC1t00134H Brassica oleracea HOM05D004858 ORTHO05D005600 5.4e-20 100.9 88 55.7
HPP92_021258 Vanilla planifolia HOM05D000682 ORTHO05D000510 7.1e-20 100.5 70 62.9
DCAR_021459 Daucus carota HOM05D004858 ORTHO05D005600 9.2e-20 100.1 88 58.0
Lsat_1_v5_gn_4_159121 Lactuca sativa HOM05D004858 ORTHO05D005600 1.6e-19 99.4 88 58.0
Nitab4.5_0002639g0030 Nicotiana tabacum HOM05D004858 ORTHO05D005600 2.3e-18 95.5 74 60.8
vmacro18001 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 2.3e-18 95.5 54 70.4
MELO3C014946.2 Cucumis melo HOM05D004858 ORTHO05D005600 7.3e-17 90.5 74 64.9
CSS0003752 Camellia sinensis var. sinensis HOM05D004858 ORTHO05D005600 1.2e-16 89.7 73 64.4
C03p79020 Brassica napus HOM05D004858 ORTHO05D005600 6.8e-15 84.0 63 63.5
BraA08t34250Z Brassica rapa HOM05D004858 ORTHO05D005600 3.4e-14 81.6 74 58.1
Ah.03g139600 Amaranthus hybridus HOM05D004858 ORTHO05D005600 4.4e-14 81.3 70 60.0
Sc03g0000690 Simmondsia chinensis HOM05D004858 ORTHO05D005600 5.8e-14 80.9 75 56.0
Mapoly0043s0104 Marchantia polymorpha HOM05D004858 ORTHO05D005600 4.9e-13 77.8 89 48.3
Hund16598 Selenicereus undatus HOM05D004858 ORTHO05D005600 8.4e-13 77.0 70 52.9
Nitab4.5_0000396g0060 Nicotiana tabacum HOM05D004858 ORTHO05D005600 7.1e-12 73.9 93 45.2
SEGI_12659 Sequoiadendron giganteum HOM05D004858 ORTHO05D005600 1.3e-10 69.7 49 59.2
PGSC0003DMG400030628 Solanum tuberosum HOM05D004858 ORTHO05D005600 1.7e-10 69.3 75 49.3
Pp3c5_3360 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.1e-09 66.6 65 47.7
AagrBONN_evm.TU.Sc2ySwM_344.1653 Anthoceros agrestis HOM05D004858 ORTHO05D005600 1.5e-09 66.2 80 46.2
Pp3c6_25050 Physcomitrium patens HOM05D004858 ORTHO05D005600 1.9e-09 65.9 86 40.7
SHI12046 Sapria himalayana HOM05D004858 ORTHO05D005600 2.5e-09 65.5 46 65.2
BraA01t00120Z Brassica rapa HOM05D004858 ORTHO05D005600 4.3e-09 64.7 91 45.1
vmacro22430 Vaccinium macrocarpon HOM05D004858 ORTHO05D005600 7.3e-09 63.9 35 71.4
arahy.Tifrunner.gnm1.ann1.0N5P6D Arachis hypogaea HOM05D004858 ORTHO05D005600 9.0e-07 57.0 51 58.8
arahy.Tifrunner.gnm1.ann1.HTA6FY Arachis hypogaea HOM05D004858 ORTHO05D005600 9.0e-07 57.0 51 58.8
CBR_g50891 Chara braunii HOM05D004858 ORTHO05D005600 9.9e-06 53.5 92 35.9


User provided reference genes

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