Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0767G108 Amborella trichopoda HOM05D004454 ORTHO05D005462 1.0e-72 276.6 133 100.0
MBI01_g40850_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 6.8e-32 141.0 102 63.7
ATR0057G034 Amborella trichopoda HOM05D004454 ORTHO05D005462 1.5e-31 139.8 128 60.2
CDE04G0088 Ceratophyllum demersum HOM05D004454 ORTHO05D005462 4.5e-28 128.3 92 66.3
Medtr8g447330 Medicago truncatula HOM05D004454 ORTHO05D005462 7.5e-23 110.9 86 57.0
Atru.chr9.2393 Acer truncatum HOM05D004454 ORTHO05D005462 6.3e-22 107.8 162 40.1
GSVIVG01000277001 Vitis vinifera HOM05D004454 ORTHO05D005462 1.1e-21 107.1 115 47.8
MBI01_g33693_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 5.9e-20 101.3 129 46.5
CDE12G0785 Ceratophyllum demersum HOM05D004454 ORTHO05D005462 1.3e-19 100.1 74 63.5
GSVIVG01022319001 Vitis vinifera HOM05D004454 ORTHO05D005462 8.6e-19 97.4 115 44.3
COL.COLO4_19778 Corchorus olitorius HOM05D004454 ORTHO05D005462 4.7e-17 91.7 70 60.0
TAR374G1062 Trochodendron aralioides HOM05D004454 ORTHO05D005462 6.8e-16 87.8 129 39.5
Manes.14G071000 Manihot esculenta HOM05D004454 ORTHO05D005462 1.2e-15 87.0 129 40.3
COL.COLO4_21447 Corchorus olitorius HOM05D000359 ORTHO05D000251 2.0e-15 86.3 102 43.1
MBI04_g34104_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 3.4e-15 85.5 70 57.1
Sc04g0002160 Simmondsia chinensis HOM05D004454 ORTHO05D005462 5.7e-15 84.7 70 57.1
Actinidia19078 Actinidia chinensis HOM05D004454 ORTHO05D005462 7.5e-15 84.3 129 39.5
Actinidia34963 Actinidia chinensis HOM05D004454 ORTHO05D005462 9.8e-15 84.0 129 38.8
Cpa.g.sc35.32 Carica papaya HOM05D004454 ORTHO05D005462 9.8e-15 84.0 65 60.0
AL6G31880 Arabidopsis lyrata HOM05D001017 ORTHO05D005462 2.2e-14 82.8 47 74.5
CSS0019873 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 2.2e-14 82.8 129 38.0
CSS0024488 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 2.2e-14 82.8 129 38.0
Dinv02657 Davidia involucrata HOM05D004454 ORTHO05D005462 2.8e-14 82.4 130 37.7
Duzib084G0805 Durio zibethinus HOM05D004454 ORTHO05D005462 3.7e-14 82.0 69 55.1
Eucgr.B00957 Eucalyptus grandis HOM05D004454 ORTHO05D005462 3.7e-14 82.0 130 36.9
Thecc.03G002900 Theobroma cacao HOM05D004454 ORTHO05D005462 3.7e-14 82.0 69 56.5
MSTRG.9661 Avicennia marina HOM05D004454 ORTHO05D005462 4.9e-14 81.6 70 55.7
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 4.9e-14 81.6 70 54.3
Lj9A454G67 Lonicera japonica HOM05D004454 ORTHO05D005462 4.9e-14 81.6 69 53.6
QL02p081076 Quercus lobata HOM05D004454 ORTHO05D005462 4.9e-14 81.6 129 37.2
QL10p013674 Quercus lobata HOM05D004454 ORTHO05D005462 4.9e-14 81.6 129 37.2
QL10p027831 Quercus lobata HOM05D004454 ORTHO05D005462 4.9e-14 81.6 129 37.2
SalBow5G4570 Salvia bowleyana HOM05D004454 ORTHO05D005462 4.9e-14 81.6 69 55.1
Lalb_Chr19g0133161 Lupinus albus HOM05D004454 ORTHO05D005462 6.3e-14 81.3 127 37.0
Solyc03g113740.4 Solanum lycopersicum HOM05D004454 ORTHO05D005462 6.3e-14 81.3 83 48.2
Sopen03g032790 Solanum pennellii HOM05D004454 ORTHO05D005462 6.3e-14 81.3 83 48.2
Nn4g22938 Nelumbo nucifera HOM05D004454 ORTHO05D005462 8.3e-14 80.9 69 53.6
Os02g0656300 Oryza sativa ssp. japonica HOM05D004454 ORTHO05D005462 8.3e-14 80.9 64 56.2
SHI46877 Sapria himalayana HOM05D004454 ORTHO05D005462 8.3e-14 80.9 69 53.6
Hund02707 Selenicereus undatus HOM05D004454 ORTHO05D005462 8.3e-14 80.9 64 57.8
TAR629G2352 Trochodendron aralioides HOM05D004454 ORTHO05D005462 8.3e-14 80.9 130 36.9
Glyma.01G216500 Glycine max HOM05D004454 ORTHO05D005462 1.1e-13 80.5 60 60.0
Hma1.2p1_0002F.1_g002910 Hydrangea macrophylla HOM05D004454 ORTHO05D005462 1.1e-13 80.5 69 53.6
Migut.I00064 Erythranthe guttata HOM05D004454 ORTHO05D005462 1.4e-13 80.1 69 55.1
Eucgr.B00321 Eucalyptus grandis HOM05D004454 ORTHO05D005462 1.4e-13 80.1 129 36.4
Eucgr.B00325 Eucalyptus grandis HOM05D004454 ORTHO05D005462 1.4e-13 80.1 129 36.4
Nitab4.5_0000026g0380 Nicotiana tabacum HOM05D004454 ORTHO05D005462 1.4e-13 80.1 69 53.6
Nitab4.5_0003577g0020 Nicotiana tabacum HOM05D004454 ORTHO05D005462 1.4e-13 80.1 69 53.6
PSO013G0161 Papaver somniferum HOM05D004454 ORTHO05D005462 1.4e-13 80.1 129 38.0
PSO832G1188 Papaver somniferum HOM05D004454 ORTHO05D005462 1.4e-13 80.1 129 38.0
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 1.8e-13 79.7 69 55.1
Zm00001eb249420 Zea mays HOM05D004454 ORTHO05D005462 1.8e-13 79.7 65 55.4
Carub.0005s1425 Capsella rubella HOM05D004454 ORTHO05D005462 2.4e-13 79.3 59 61.0
CAN.G853.25 Capsicum annuum HOM05D004454 ORTHO05D005462 2.4e-13 79.3 82 47.6
Dinv13132 Davidia involucrata HOM05D004454 ORTHO05D005462 3.2e-13 79.0 69 52.2
Gohir.D10G224100 Gossypium hirsutum HOM05D004454 ORTHO05D005462 3.2e-13 79.0 129 38.0
Sabra12G0053400 Salix brachista HOM05D004454 ORTHO05D005462 3.2e-13 79.0 129 38.0
AL5G27480 Arabidopsis lyrata HOM05D004454 ORTHO05D005462 4.1e-13 78.6 59 59.3
ClCG01G014140 Citrullus lanatus HOM05D004454 ORTHO05D005462 4.1e-13 78.6 82 46.3
Ciclev10004829m.g Citrus clementina HOM05D004454 ORTHO05D005462 4.1e-13 78.6 129 37.2
Thhalv10010239m.g Eutrema salsugineum HOM05D004454 ORTHO05D005462 4.1e-13 78.6 59 59.3
Sp5g13890 Schrenkiella parvula HOM05D004454 ORTHO05D005462 4.1e-13 78.6 59 59.3
SGA_v2.0_scaffold467G52036 Striga asiatica HOM05D004454 ORTHO05D005462 4.1e-13 78.6 69 53.6
TPR.G25821 Trifolium pratense HOM05D004454 ORTHO05D005462 4.1e-13 78.6 70 52.9
Aa31LG4G16750 Aethionema arabicum HOM05D004454 ORTHO05D005462 5.4e-13 78.2 59 59.3
AT3G48150 Arabidopsis thaliana HOM05D004454 ORTHO05D005462 5.4e-13 78.2 59 59.3
BcaC09g49851 Brassica carinata HOM05D004454 ORTHO05D005462 5.4e-13 78.2 59 59.3
A01p25460 Brassica napus HOM05D004454 ORTHO05D005462 5.4e-13 78.2 59 59.3
C01p31930 Brassica napus HOM05D004454 ORTHO05D005462 5.4e-13 78.2 59 59.3
BolC1t03163H Brassica oleracea HOM05D004454 ORTHO05D005462 5.4e-13 78.2 59 59.3
BraA01t02468Z Brassica rapa HOM05D004454 ORTHO05D005462 5.4e-13 78.2 59 59.3
Ciclev10019469m.g Citrus clementina HOM05D004454 ORTHO05D005462 7.0e-13 77.8 69 52.2
Haze_07431 Corylus avellana HOM05D004454 ORTHO05D005462 7.0e-13 77.8 130 38.5
Gorai.011G255100 Gossypium raimondii HOM05D004454 ORTHO05D005462 7.0e-13 77.8 69 53.6
Rhsim12G0161100 Rhododendron simsii HOM05D004454 ORTHO05D005462 7.0e-13 77.8 69 52.2
SEGI_02939 Sequoiadendron giganteum HOM05D004454 ORTHO05D005462 7.0e-13 77.8 60 60.0
vmacro16584 Vaccinium macrocarpon HOM05D004454 ORTHO05D005462 7.0e-13 77.8 69 52.2
MELO3C002234.2 Cucumis melo HOM05D004454 ORTHO05D005462 9.2e-13 77.4 82 45.1
CsaV3_1G008170 Cucumis sativus L. HOM05D004454 ORTHO05D005462 9.2e-13 77.4 82 45.1
Glyma.11G026400 Glycine max HOM05D004454 ORTHO05D005462 9.2e-13 77.4 129 35.7
Lalb_Chr03g0031901 Lupinus albus HOM05D004454 ORTHO05D005462 9.2e-13 77.4 68 52.9
Nn3g17037 Nelumbo nucifera HOM05D004454 ORTHO05D005462 9.2e-13 77.4 68 52.9
Oeu016330.1 Olea europaea HOM05D004454 ORTHO05D005462 9.2e-13 77.4 67 55.2
Gohir.A10G215100 Gossypium hirsutum HOM05D004454 ORTHO05D005462 1.2e-12 77.0 69 53.6
Sed0026284 Sechium edule HOM05D004454 ORTHO05D005462 1.2e-12 77.0 69 52.2
CiPaw.12G022700 Carya illinoinensis HOM05D004454 ORTHO05D005462 1.6e-12 76.6 83 45.8
Ca_00529_v3 Cicer arietinum L. HOM05D004454 ORTHO05D005462 1.6e-12 76.6 129 34.9
Potri.012G075000 Populus trichocarpa HOM05D004454 ORTHO05D005462 1.6e-12 76.6 129 37.2
unitig_0.g2210 Utricularia gibba HOM05D004454 ORTHO05D005462 1.6e-12 76.6 68 51.5
BcaB05g22913 Brassica carinata HOM05D004454 ORTHO05D005462 2.0e-12 76.3 59 57.6
Prupe.5G180200 Prunus persica HOM05D004454 ORTHO05D005462 2.0e-12 76.3 69 52.2
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 2.7e-12 75.9 70 51.4
MD06G1182000 Malus domestica HOM05D004454 ORTHO05D005462 2.7e-12 75.9 69 52.2
MD13G1029000 Malus domestica HOM05D004454 ORTHO05D005462 3.5e-12 75.5 69 52.2
MD14G1188000 Malus domestica HOM05D004454 ORTHO05D005462 3.5e-12 75.5 69 52.2
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 3.5e-12 75.5 94 40.4
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 3.5e-12 75.5 82 46.3
Ca_26268_v3 Cicer arietinum L. HOM05D004454 ORTHO05D005462 4.5e-12 75.1 69 49.3
THA.LOC104799671 Tarenaya hassleriana HOM05D004454 ORTHO05D005462 4.5e-12 75.1 59 57.6
TWI60G0736 Tripterygium wilfordii HOM05D004454 ORTHO05D005462 4.5e-12 75.1 70 51.4
BcaC07g39296 Brassica carinata HOM05D004454 ORTHO05D005462 5.9e-12 74.7 59 54.2
A06p19550 Brassica napus HOM05D004454 ORTHO05D005462 5.9e-12 74.7 59 54.2
C08p23030 Brassica napus HOM05D004454 ORTHO05D005462 5.9e-12 74.7 59 54.2
BolC8t49941H Brassica oleracea HOM05D004454 ORTHO05D005462 5.9e-12 74.7 59 54.2
BraA06t25035Z Brassica rapa HOM05D004454 ORTHO05D005462 5.9e-12 74.7 59 54.2
CARHR156870 Cardamine hirsuta HOM05D004454 ORTHO05D005462 5.9e-12 74.7 59 55.9
Glyma.12G016100 Glycine max HOM05D004454 ORTHO05D005462 5.9e-12 74.7 60 56.7
Cfa019062 Carpinus fangiana HOM05D004454 ORTHO05D005462 1.0e-11 73.9 129 37.2
Lj3g0012006 Lotus japonicus HOM05D004454 ORTHO05D005462 1.0e-11 73.9 128 35.2
Ah.11g046280 Amaranthus hybridus HOM05D004454 ORTHO05D005462 1.3e-11 73.6 65 56.9
EL10Ac5g10847 Beta vulgaris HOM05D004454 ORTHO05D005462 1.3e-11 73.6 65 55.4
BcaB01g00842 Brassica carinata HOM05D004454 ORTHO05D005462 1.7e-11 73.2 59 52.5
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 1.7e-11 73.2 70 50.0
Medtr8g021140 Medicago truncatula HOM05D004454 ORTHO05D005462 2.3e-11 72.8 60 55.0
SMO147G0289 Selaginella moellendorffii HOM05D004454 ORTHO05D005462 2.3e-11 72.8 60 53.3
AUR62008292 Chenopodium quinoa HOM05D004454 ORTHO05D005462 3.9e-11 72.0 65 53.8
AUR62031054 Chenopodium quinoa HOM05D004454 ORTHO05D005462 3.9e-11 72.0 65 53.8
VMungo1215G3435 Vigna mungo HOM05D004454 ORTHO05D005462 3.9e-11 72.0 128 34.4
DCAR_031479 Daucus carota HOM05D004454 ORTHO05D005462 5.0e-11 71.6 60 53.3
FAN08G3623 Fragaria x ananassa HOM05D004454 ORTHO05D005462 5.0e-11 71.6 100 37.0
Mapoly0091s0003 Marchantia polymorpha HOM05D004454 ORTHO05D005462 6.6e-11 71.2 60 55.0
RcHm_v2.0_Chr7g0179821 Rosa chinensis HOM05D004454 ORTHO05D005462 8.6e-11 70.9 71 46.5
arahy.Tifrunner.gnm1.ann1.7D20F1 Arachis hypogaea HOM05D004454 ORTHO05D005462 1.1e-10 70.5 69 49.3
arahy.Tifrunner.gnm1.ann1.AQXS59 Arachis hypogaea HOM05D004454 ORTHO05D005462 1.1e-10 70.5 69 49.3
Phvul.002G154200 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 1.1e-10 70.5 60 56.7
Pp3c11_17870 Physcomitrium patens HOM05D004454 ORTHO05D005462 1.1e-10 70.5 59 52.5
Cc04_g15930 Coffea canephora HOM05D004454 ORTHO05D005462 1.5e-10 70.1 71 45.1
DCAR_026102 Daucus carota HOM05D004454 ORTHO05D005462 1.5e-10 70.1 69 46.4
HPP92_012132 Vanilla planifolia HOM05D004454 ORTHO05D005462 1.5e-10 70.1 129 34.1
Phvul.007G021500 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 1.9e-10 69.7 60 56.7
Psat4g146120 Pisum sativum HOM05D004454 ORTHO05D005462 1.9e-10 69.7 69 47.8
Aqoxy3G03142 Aquilegia oxysepala HOM05D004454 ORTHO05D005462 9.5e-10 67.4 58 51.7
FvH4_5g16310 Fragaria vesca HOM05D004454 ORTHO05D005462 1.2e-09 67.0 100 36.0
FAN04G1717 Fragaria x ananassa HOM05D004454 ORTHO05D005462 1.2e-09 67.0 100 36.0
FAN13G0079 Fragaria x ananassa HOM05D004454 ORTHO05D005462 1.2e-09 67.0 100 36.0
FAN18G3350 Fragaria x ananassa HOM05D004454 ORTHO05D005462 1.2e-09 67.0 100 36.0
MD17G1272000 Malus domestica HOM05D004454 ORTHO05D005462 2.1e-09 66.2 64 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 2.6e-07 59.3 58 46.6
FAN21G3202 Fragaria x ananassa HOM05D004454 ORTHO05D035857 2.2e-06 56.2 74 43.2
FAN24G1390 Fragaria x ananassa HOM05D004454 ORTHO05D035857 2.9e-06 55.8 95 38.9


User provided reference genes

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