Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0767G045 Amborella trichopoda HOM05D000108 ORTHO05D001407 1.1e-162 576.6 292 100.0
TAR625G0090 Trochodendron aralioides HOM05D000108 ORTHO05D001407 1.7e-35 154.1 321 42.4
Sed0014402 Sechium edule HOM05D000108 ORTHO05D001407 2.3e-32 143.7 310 38.7
Cc10_g15880 Coffea canephora HOM05D000108 ORTHO05D001407 3.0e-32 143.3 318 38.7
Ciclev10000037m.g Citrus clementina HOM05D000108 ORTHO05D001407 8.7e-32 141.7 299 37.8
MBI16_g12464_MAGBIO Magnolia biondii HOM05D000108 ORTHO05D001407 1.5e-31 141.0 298 39.9
Cpa.g.sc21.19 Carica papaya HOM05D000108 ORTHO05D001407 1.3e-30 137.9 315 38.1
CsaV3_3G047980 Cucumis sativus L. HOM05D000108 ORTHO05D001407 2.1e-30 137.1 311 38.3
Dinv44861 Davidia involucrata HOM05D000108 ORTHO05D001407 4.8e-30 136.0 200 44.5
TWI36G0449 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 1.4e-29 134.4 299 39.8
ClCG11G014560 Citrullus lanatus HOM05D000108 ORTHO05D001407 1.8e-29 134.0 310 39.0
Eucgr.F00421 Eucalyptus grandis HOM05D000108 ORTHO05D001407 6.9e-29 132.1 316 37.3
GSVIVG01009178001 Vitis vinifera HOM05D000108 ORTHO05D001407 6.9e-29 132.1 310 39.0
Nn5g29882 Nelumbo nucifera HOM05D000108 ORTHO05D001407 2.0e-28 130.6 274 39.4
Actinidia10275 Actinidia chinensis HOM05D000108 ORTHO05D001407 2.6e-28 130.2 317 36.9
MELO3C003524.2 Cucumis melo HOM05D000108 ORTHO05D001407 2.6e-28 130.2 312 36.5
Thecc.08G070900 Theobroma cacao HOM05D000108 ORTHO05D001407 3.4e-28 129.8 300 38.3
Sed0004579 Sechium edule HOM05D000108 ORTHO05D001407 4.5e-28 129.4 303 38.0
AUR62019089 Chenopodium quinoa HOM05D000108 ORTHO05D001407 5.8e-28 129.0 319 37.0
Duzib093G0656 Durio zibethinus HOM05D000108 ORTHO05D001407 5.8e-28 129.0 298 38.3
COL.COLO4_35247 Corchorus olitorius HOM05D000108 ORTHO05D001407 7.6e-28 128.6 297 38.0
AUR62014346 Chenopodium quinoa HOM05D000108 ORTHO05D001407 9.9e-28 128.3 320 35.9
Dinv42613 Davidia involucrata HOM05D000108 ORTHO05D001407 9.9e-28 128.3 212 42.9
Duzib116G0269 Durio zibethinus HOM05D000108 ORTHO05D001407 1.3e-27 127.9 308 38.0
Prupe.1G532000 Prunus persica HOM05D000108 ORTHO05D001407 1.7e-27 127.5 218 42.7
Actinidia19242 Actinidia chinensis HOM05D000108 ORTHO05D001407 4.9e-27 125.9 275 39.6
Ah.05g171180 Amaranthus hybridus HOM05D000108 ORTHO05D001407 4.9e-27 125.9 319 35.4
TWI12G0680 Tripterygium wilfordii HOM05D000108 ORTHO05D001407 8.4e-27 125.2 299 39.8
Haze_22458 Corylus avellana HOM05D000108 ORTHO05D001407 1.4e-26 124.4 218 43.6
Hund17282 Selenicereus undatus HOM05D000108 ORTHO05D001407 1.4e-26 124.4 302 36.4
vmacro21339 Vaccinium macrocarpon HOM05D000108 ORTHO05D001407 2.4e-26 123.6 316 37.7
Atru.chr13.1012 Acer truncatum HOM05D000108 ORTHO05D001407 3.2e-26 123.2 267 37.1
Manes.18G058800 Manihot esculenta HOM05D000108 ORTHO05D001407 3.2e-26 123.2 336 33.9
Rhsim06G0071700 Rhododendron simsii HOM05D000108 ORTHO05D001407 4.2e-26 122.9 320 35.6
QL09p017790 Quercus lobata HOM05D000108 ORTHO05D001407 5.5e-26 122.5 312 36.9
FvH4_5g35340 Fragaria vesca HOM05D000108 ORTHO05D001407 7.1e-26 122.1 317 37.2
FAN13G1922 Fragaria x ananassa HOM05D000108 ORTHO05D001407 1.2e-25 121.3 316 37.3
PSO675G4151 Papaver somniferum HOM05D000108 ORTHO05D001407 1.2e-25 121.3 313 35.5
Potri.005G150800 Populus trichocarpa HOM05D000108 ORTHO05D001407 1.2e-25 121.3 322 38.5
FAN04G1245 Fragaria x ananassa HOM05D000108 ORTHO05D001407 2.1e-25 120.6 316 37.3
DCAR_019314 Daucus carota HOM05D000108 ORTHO05D001407 2.7e-25 120.2 308 37.7
Oeu061173.1 Olea europaea HOM05D000108 ORTHO05D001407 3.5e-25 119.8 269 37.9
MSTRG.24429 Avicennia marina HOM05D000108 ORTHO05D001407 4.6e-25 119.4 301 35.9
Cfa013795 Carpinus fangiana HOM05D000108 ORTHO05D001407 6.0e-25 119.0 218 41.7
FAN08G2169 Fragaria x ananassa HOM05D000108 ORTHO05D001407 6.0e-25 119.0 316 35.8
FAN18G4137 Fragaria x ananassa HOM05D000108 ORTHO05D001407 6.0e-25 119.0 316 35.8
Oeu039158.1 Olea europaea HOM05D000108 ORTHO05D010239 6.0e-25 119.0 220 41.8
Hund26815 Selenicereus undatus HOM05D000108 ORTHO05D001407 6.0e-25 119.0 314 35.4
CSS0046831 Camellia sinensis var. sinensis HOM05D000108 ORTHO05D001407 1.3e-24 117.9 315 37.1
CAN.G475.30 Capsicum annuum HOM05D000108 ORTHO05D001407 1.8e-24 117.5 319 33.5
Os02g0742800 Oryza sativa ssp. japonica HOM05D000108 ORTHO05D001407 3.9e-24 116.3 310 33.2
THA.LOC104799089 Tarenaya hassleriana HOM05D000108 ORTHO05D001407 3.9e-24 116.3 319 35.7
Aqoxy6G00873 Aquilegia oxysepala HOM05D000108 ORTHO05D001407 5.1e-24 115.9 301 36.9
MD15G1385300 Malus domestica HOM05D000108 ORTHO05D001407 6.7e-24 115.5 312 35.6
Lj4C737G6 Lonicera japonica HOM05D000076 ORTHO05D003143 1.5e-23 114.4 327 35.8
Nn1g05573 Nelumbo nucifera HOM05D000108 ORTHO05D001407 1.5e-23 114.4 315 37.1
CiPaw.07G165600 Carya illinoinensis HOM05D000108 ORTHO05D001407 1.9e-23 114.0 301 34.6
Sabra02G0083300 Salix brachista HOM05D000108 ORTHO05D001407 2.5e-23 113.6 327 34.3
Nitab4.5_0000131g0280 Nicotiana tabacum HOM05D000108 ORTHO05D001407 7.4e-23 112.1 189 42.3
Aa31LG11G2370 Aethionema arabicum HOM05D000108 ORTHO05D001407 1.3e-22 111.3 319 33.9
Potri.002G106000 Populus trichocarpa HOM05D000108 ORTHO05D001407 1.6e-22 110.9 253 36.0
Nitab4.5_0010888g0010 Nicotiana tabacum HOM05D000108 ORTHO05D001407 2.8e-22 110.2 224 38.4
VMungo0647G1798 Vigna mungo HOM05D000108 ORTHO05D001407 4.8e-22 109.4 274 34.7
RcHm_v2.0_Chr7g0236691 Rosa chinensis HOM05D000108 ORTHO05D001407 6.2e-22 109.0 245 38.8
Gohir.D05G222000 Gossypium hirsutum HOM05D000108 ORTHO05D001407 1.1e-21 108.2 307 34.2
Gorai.009G229400 Gossypium raimondii HOM05D000108 ORTHO05D001407 1.1e-21 108.2 307 33.6
MD08G1198000 Malus domestica HOM05D000108 ORTHO05D001407 1.1e-21 108.2 312 35.3
DCAR_012856 Daucus carota HOM05D000108 ORTHO05D001407 3.1e-21 106.7 329 35.9
Gorai.010G034800 Gossypium raimondii HOM05D000108 ORTHO05D001407 3.1e-21 106.7 287 35.5
SGA_v2.0_scaffold48G17831 Striga asiatica HOM05D000108 ORTHO05D001407 3.1e-21 106.7 256 38.3
PGSC0003DMG400009361 Solanum tuberosum HOM05D000108 ORTHO05D001407 5.3e-21 105.9 248 35.1
Migut.N02859 Erythranthe guttata HOM05D000108 ORTHO05D001407 9.0e-21 105.1 264 35.2
Gohir.A06G032400 Gossypium hirsutum HOM05D000108 ORTHO05D001407 1.2e-20 104.8 233 37.3
Gohir.D06G031600 Gossypium hirsutum HOM05D000108 ORTHO05D001407 1.5e-20 104.4 284 35.6
Gohir.A05G219500 Gossypium hirsutum HOM05D000108 ORTHO05D001407 2.6e-20 103.6 306 32.4
TAR381G1095 Trochodendron aralioides HOM05D000108 ORTHO05D001407 2.6e-20 103.6 318 34.9
Sopen04g030110 Solanum pennellii HOM05D000108 ORTHO05D001407 3.4e-20 103.2 239 35.1
BolC7t44994H Brassica oleracea HOM05D000108 ORTHO05D001407 4.5e-20 102.8 262 34.4
C07p44710 Brassica napus HOM05D000108 ORTHO05D001407 7.6e-20 102.1 298 32.9
CANSAT25G0259 Cannabis sativa HOM05D000108 ORTHO05D001407 7.6e-20 102.1 312 33.0
Phvul.008G181800 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 7.6e-20 102.1 261 33.7
unitig_744.g24110 Utricularia gibba HOM05D000108 ORTHO05D001407 7.6e-20 102.1 259 34.4
CANSAT25G3236 Cannabis sativa HOM05D000108 ORTHO05D001407 1.0e-19 101.7 320 34.7
A02p41300 Brassica napus HOM05D000108 ORTHO05D001407 1.7e-19 100.9 294 33.0
Lsat_1_v5_gn_6_104981 Lactuca sativa HOM05D000108 ORTHO05D001407 2.2e-19 100.5 310 34.8
PSO541G4558 Papaver somniferum HOM05D000108 ORTHO05D001407 6.5e-19 99.0 324 32.7
EL10Ac1g00999 Beta vulgaris HOM05D000108 ORTHO05D001407 1.1e-18 98.2 317 33.4
BraA03t13788Z Brassica rapa HOM05D000108 ORTHO05D001407 3.2e-18 96.7 264 33.7
Glyma.14G181800 Glycine max HOM05D000108 ORTHO05D001407 3.2e-18 96.7 276 32.6
Ca_05438_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001407 5.5e-18 95.9 259 33.6
A03p46640 Brassica napus HOM05D000108 ORTHO05D001407 9.3e-18 95.1 297 32.7
unitig_21.g20613 Utricularia gibba HOM05D000108 ORTHO05D001407 1.2e-17 94.7 263 35.7
C02p61270 Brassica napus HOM05D000108 ORTHO05D001407 1.0e-16 91.7 299 33.8
BcaC03g18065 Brassica carinata HOM05D000108 ORTHO05D001407 1.3e-16 91.3 299 33.8
PGR031G0065 Punica granatum HOM05D000108 ORTHO05D001407 1.8e-16 90.9 180 41.7
Sp2g24240 Schrenkiella parvula HOM05D000108 ORTHO05D001407 1.8e-16 90.9 319 31.3
BraA02t09076Z Brassica rapa HOM05D000108 ORTHO05D001407 3.9e-16 89.7 308 32.8
Lalb_Chr17g0344541 Lupinus albus HOM05D000108 ORTHO05D001407 3.9e-16 89.7 308 30.2
Actinidia33570 Actinidia chinensis HOM05D000108 ORTHO05D030886 5.1e-16 89.4 184 39.1
Glyma.02G214300 Glycine max HOM05D000108 ORTHO05D001407 5.1e-16 89.4 273 31.5
Prupe.1G532100 Prunus persica HOM05D000108 ORTHO05D010239 6.7e-16 89.0 219 34.7
Lj4C718T3 Lonicera japonica HOM05D000108 ORTHO05D001407 1.1e-15 88.2 223 37.2
RcHm_v2.0_Chr7g0236371 Rosa chinensis HOM05D000108 ORTHO05D010239 1.5e-15 87.8 136 41.2
BcaC06g33206 Brassica carinata HOM05D000108 ORTHO05D001407 1.9e-15 87.4 302 30.8
Lalb_Chr08g0242511 Lupinus albus HOM05D000108 ORTHO05D001407 2.5e-15 87.0 286 30.4
HanXRQChr05g0163351 Helianthus annuus HOM05D000108 ORTHO05D001407 4.3e-15 86.3 254 34.6
Sc12g0006640 Simmondsia chinensis HOM05D000108 ORTHO05D001407 4.3e-15 86.3 212 34.9
TPR.G34715 Trifolium pratense HOM05D000108 ORTHO05D001407 4.3e-15 86.3 312 30.1
MD15G1385400 Malus domestica HOM05D000108 ORTHO05D010239 7.4e-15 85.5 218 35.8
arahy.Tifrunner.gnm1.ann1.IE7ZNS Arachis hypogaea HOM05D000108 ORTHO05D001407 1.3e-14 84.7 313 31.6
Haze_22459 Corylus avellana HOM05D000108 ORTHO05D010239 1.3e-14 84.7 196 35.7
ECA246G0586 Erigeron canadensis HOM05D000108 ORTHO05D001407 1.6e-14 84.3 306 32.7
AT5G60930 Arabidopsis thaliana HOM05D000108 ORTHO05D001407 2.1e-14 84.0 325 30.2
arahy.Tifrunner.gnm1.ann1.X6V3MP Arachis hypogaea HOM05D000108 ORTHO05D001407 2.1e-14 84.0 305 30.8
Thhalv10003526m.g Eutrema salsugineum HOM05D000108 ORTHO05D001407 2.1e-14 84.0 259 32.8
MD08G1198100 Malus domestica HOM05D000108 ORTHO05D010239 2.8e-14 83.6 216 34.7
QL09p017810 Quercus lobata HOM05D000108 ORTHO05D010239 2.8e-14 83.6 141 41.1
FAN08G2432 Fragaria x ananassa HOM05D000108 ORTHO05D010239 3.7e-14 83.2 231 32.0
FAN18G4321 Fragaria x ananassa HOM05D000108 ORTHO05D010239 3.7e-14 83.2 231 32.0
BolC2t12173H Brassica oleracea HOM05D000108 ORTHO05D001407 4.8e-14 82.8 312 32.4
Lj1g0007620 Lotus japonicus HOM05D000108 ORTHO05D001407 4.8e-14 82.8 220 35.0
CiPaw.07G165500 Carya illinoinensis HOM05D000108 ORTHO05D010239 8.2e-14 82.0 214 36.0
FvH4_5g35240 Fragaria vesca HOM05D000108 ORTHO05D010239 8.2e-14 82.0 231 31.6
Lalb_Chr04g0252841 Lupinus albus HOM05D000108 ORTHO05D001407 1.4e-13 81.3 260 33.1
TWI56G1192 Tripterygium wilfordii HOM05D000108 ORTHO05D010239 2.4e-13 80.5 129 38.8
BcaC03g18062 Brassica carinata HOM05D000108 ORTHO05D001407 5.3e-13 79.3 299 33.1
FAN13G2627 Fragaria x ananassa HOM05D000108 ORTHO05D010239 1.5e-12 77.8 230 30.9
AL8G37550 Arabidopsis lyrata HOM05D000108 ORTHO05D001407 2.6e-12 77.0 317 30.9
Peaxi162Scf00454g00515 Petunia axillaris HOM05D000108 ORTHO05D010239 2.6e-12 77.0 108 43.5
Glyma.06G096600 Glycine max HOM05D000108 ORTHO05D010239 4.5e-12 76.3 189 34.4
VMungo1309G0378 Vigna mungo HOM05D000108 ORTHO05D010239 4.5e-12 76.3 149 36.9
Phvul.002G296500 Phaseolus vulgaris HOM05D000108 ORTHO05D001407 7.6e-12 75.5 230 33.0
CANSAT25G3032 Cannabis sativa HOM05D000108 ORTHO05D010239 1.7e-11 74.3 103 41.7
Glyma.06G096200 Glycine max HOM05D000108 ORTHO05D001407 2.2e-11 73.9 197 33.5
Carub.0008s2162 Capsella rubella HOM05D000108 ORTHO05D001407 2.9e-11 73.6 323 30.7
Lalb_Chr08g0242521 Lupinus albus HOM05D000108 ORTHO05D010239 8.5e-11 72.0 219 35.6
CARHR274610 Cardamine hirsuta HOM05D000108 ORTHO05D001407 3.2e-10 70.1 324 29.3
Psat5g048800 Pisum sativum HOM05D000108 ORTHO05D001407 4.2e-10 69.7 268 29.9
VMungo1080G0967 Vigna mungo HOM05D000108 ORTHO05D001407 4.2e-10 69.7 209 33.5
RcHm_v2.0_Chr6g0258621 Rosa chinensis HOM05D000108 ORTHO05D010239 5.5e-10 69.3 135 35.6
Gohir.A06G032300 Gossypium hirsutum HOM05D000108 ORTHO05D010239 1.2e-09 68.2 142 33.8
Gorai.010G034700 Gossypium raimondii HOM05D000108 ORTHO05D010239 1.2e-09 68.2 142 34.5
Manes.18G058700 Manihot esculenta HOM05D000108 ORTHO05D010239 1.2e-09 68.2 123 35.8
Ciclev10001077m.g Citrus clementina HOM05D000108 ORTHO05D010239 1.6e-09 67.8 132 36.4
Psat5g048840 Pisum sativum HOM05D000108 ORTHO05D010239 1.6e-09 67.8 221 30.8
HPP92_010913 Vanilla planifolia HOM05D000108 ORTHO05D001407 2.1e-09 67.4 159 32.7
Zm00001eb254290 Zea mays HOM05D000108 ORTHO05D001407 2.1e-09 67.4 272 30.1
Gohir.D06G031500 Gossypium hirsutum HOM05D000108 ORTHO05D010239 4.6e-09 66.2 142 33.8
Sabra02G0083400 Salix brachista HOM05D000108 ORTHO05D010239 4.6e-09 66.2 167 31.7
CDE01G0713 Ceratophyllum demersum HOM05D000108 ORTHO05D001407 7.9e-09 65.5 209 34.0
Phvul.009G036700 Phaseolus vulgaris HOM05D000108 ORTHO05D010239 1.0e-08 65.1 148 35.1
LjContig00408g0023522 Lotus japonicus HOM05D000108 ORTHO05D001407 1.3e-08 64.7 255 31.4
Psat2g065520 Pisum sativum HOM05D000108 ORTHO05D001407 1.3e-08 64.7 201 31.3
Lj1g0020667 Lotus japonicus HOM05D000108 ORTHO05D010239 1.8e-08 64.3 232 31.9
Zm00001eb254320 Zea mays HOM05D000108 ORTHO05D001407 2.3e-08 63.9 273 30.4
Cfa013796 Carpinus fangiana HOM05D000108 ORTHO05D010239 3.0e-08 63.5 226 31.9
Medtr5g066320 Medicago truncatula HOM05D000108 ORTHO05D001407 3.9e-08 63.2 324 27.8
Ca_23441_v3 Cicer arietinum L. HOM05D000108 ORTHO05D010239 5.1e-08 62.8 238 31.1
Ca_23442_v3 Cicer arietinum L. HOM05D000108 ORTHO05D001407 6.7e-08 62.4 324 27.2
Duzib041G0116 Durio zibethinus HOM05D000108 ORTHO05D010239 1.1e-07 61.6 143 33.6
Medtr3g100230 Medicago truncatula HOM05D000108 ORTHO05D010239 1.9e-07 60.8 218 30.7
Potri.002G106100 Populus trichocarpa HOM05D000108 ORTHO05D010239 1.9e-07 60.8 169 31.4
arahy.Tifrunner.gnm1.ann1.8QVC7G Arachis hypogaea HOM05D000108 ORTHO05D010239 4.3e-07 59.7 241 29.0
PGR031G1243 Punica granatum HOM05D000108 ORTHO05D010239 5.7e-07 59.3 126 35.7
arahy.Tifrunner.gnm1.ann1.CYPG82 Arachis hypogaea HOM05D000108 ORTHO05D010239 9.7e-07 58.5 279 27.2
Duzib093G0215 Durio zibethinus HOM05D000108 ORTHO05D010239 9.7e-07 58.5 136 36.8
TPR.G6375 Trifolium pratense HOM05D000108 ORTHO05D010239 1.3e-06 58.2 167 31.7
Atru.chr13.1010 Acer truncatum HOM05D000108 ORTHO05D010239 4.8e-06 56.2 147 31.3
GSVIVG01009180001 Vitis vinifera HOM05D000108 ORTHO05D010239 4.8e-06 56.2 195 33.3
Medtr3g100270 Medicago truncatula HOM05D000108 ORTHO05D001407 6.3e-06 55.8 183 30.6
arahy.Tifrunner.gnm1.ann1.2IJU75 Arachis hypogaea HOM05D000108 ORTHO05D001407 8.2e-06 55.5 274 28.5


User provided reference genes

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