Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0767G042 Amborella trichopoda HOM05D004648 ORTHO05D005782 1.8e-106 389.4 216 100.0
Nn5g29856 Nelumbo nucifera HOM05D004648 ORTHO05D005782 3.8e-48 195.7 211 52.6
TAR376G0132 Trochodendron aralioides HOM05D004648 ORTHO05D005782 4.6e-46 188.7 204 51.5
CSS0043130 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 1.5e-44 183.7 207 50.7
Dinv13591 Davidia involucrata HOM05D004648 ORTHO05D005782 1.5e-44 183.7 201 50.2
PSO541G6255 Papaver somniferum HOM05D004648 ORTHO05D005782 2.5e-44 183.0 209 48.8
CSS0033796 Camellia sinensis var. sinensis HOM05D004648 ORTHO05D005782 7.3e-44 181.4 207 49.8
Aqoxy6G00847 Aquilegia oxysepala HOM05D004648 ORTHO05D005782 4.0e-42 175.6 209 48.3
unitig_748.g7247 Utricularia gibba HOM05D000258 ORTHO05D001416 1.2e-41 174.1 211 47.9
Nitab4.5_0010932g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 3.4e-41 172.6 215 46.5
SalBow5G0620 Salvia bowleyana HOM05D004648 ORTHO05D005782 3.4e-41 172.6 213 46.9
Rhsim10G0173500 Rhododendron simsii HOM05D004648 ORTHO05D005782 4.4e-41 172.2 216 48.1
SalBow5G1021 Salvia bowleyana HOM05D004648 ORTHO05D005782 1.3e-40 170.6 213 46.5
Sc16g0000570 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.3e-40 170.6 209 49.8
Solyc11g010720.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 2.9e-40 169.5 213 46.9
PGSC0003DMG400016127 Solanum tuberosum HOM05D004648 ORTHO05D005782 2.9e-40 169.5 213 47.4
TAR628G0215 Trochodendron aralioides HOM05D004648 ORTHO05D005782 2.9e-40 169.5 211 45.0
Sopen11g005530 Solanum pennellii HOM05D004648 ORTHO05D005782 3.8e-40 169.1 213 46.9
CANSAT25G1975 Cannabis sativa HOM05D004648 ORTHO05D005782 9.3e-39 164.5 211 46.4
SGA_v2.0_scaffold45G17227 Striga asiatica HOM05D004648 ORTHO05D005782 1.2e-38 164.1 209 46.4
Duzib093G0339 Durio zibethinus HOM05D004648 ORTHO05D005782 2.1e-38 163.3 211 46.0
MELO3C011082.2 Cucumis melo HOM05D004648 ORTHO05D005782 2.7e-38 162.9 212 49.5
Actinidia06509 Actinidia chinensis HOM05D004648 ORTHO05D005782 3.5e-38 162.5 207 47.3
Atru.chr13.996 Acer truncatum HOM05D004648 ORTHO05D005782 4.6e-38 162.2 210 47.1
COL.COLO4_35262 Corchorus olitorius HOM05D004648 ORTHO05D005782 4.6e-38 162.2 211 46.0
CsaV3_2G030200 Cucumis sativus L. HOM05D004648 ORTHO05D005782 4.6e-38 162.2 212 49.5
CiPaw.08G056600 Carya illinoinensis HOM05D004648 ORTHO05D005782 6.0e-38 161.8 199 50.8
Thecc.08G072400 Theobroma cacao HOM05D004648 ORTHO05D005782 6.0e-38 161.8 207 45.9
Lj4C87T6 Lonicera japonica HOM05D004648 ORTHO05D005782 1.0e-37 161.0 177 54.2
CAN.G252.11 Capsicum annuum HOM05D004648 ORTHO05D005782 1.3e-37 160.6 213 45.5
Cpa.g.sc21.29 Carica papaya HOM05D004648 ORTHO05D005782 1.3e-37 160.6 208 45.7
RcHm_v2.0_Chr7g0235251 Rosa chinensis HOM05D004648 ORTHO05D005782 1.3e-37 160.6 203 49.3
Cc10_g08430 Coffea canephora HOM05D004648 ORTHO05D005782 2.3e-37 159.8 208 45.2
Migut.K00806 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.3e-37 159.8 212 43.9
DCAR_003444 Daucus carota HOM05D004648 ORTHO05D005782 3.0e-37 159.5 202 46.0
Gorai.009G228900 Gossypium raimondii HOM05D004648 ORTHO05D005782 3.0e-37 159.5 207 45.4
Potri.002G111300 Populus trichocarpa HOM05D004648 ORTHO05D005782 3.0e-37 159.5 210 46.2
PGSC0003DMG401009338 Solanum tuberosum HOM05D004648 ORTHO05D005782 3.0e-37 159.5 206 46.1
AUR62017983 Chenopodium quinoa HOM05D004648 ORTHO05D005782 3.9e-37 159.1 213 43.2
CiPaw.07G046500 Carya illinoinensis HOM05D004648 ORTHO05D005782 5.1e-37 158.7 208 44.7
Prupe.1G533800 Prunus persica HOM05D004648 ORTHO05D005782 5.1e-37 158.7 206 49.0
Solyc04g076470.1 Solanum lycopersicum HOM05D004648 ORTHO05D005782 8.7e-37 157.9 206 46.1
Ciclev10002461m.g Citrus clementina HOM05D004648 ORTHO05D005782 1.1e-36 157.5 204 45.6
Sabra02G0087800 Salix brachista HOM05D004648 ORTHO05D005782 1.1e-36 157.5 210 46.2
MBI16_g31265_MAGBIO Magnolia biondii HOM05D004648 ORTHO05D005782 1.5e-36 157.1 203 47.3
Nitab4.5_0000131g0120 Nicotiana tabacum HOM05D000239 ORTHO05D000484 1.5e-36 157.1 206 45.6
Duzib041G0289 Durio zibethinus HOM05D004648 ORTHO05D005782 1.9e-36 156.8 207 45.9
Gohir.A05G219000 Gossypium hirsutum HOM05D004648 ORTHO05D005782 1.9e-36 156.8 200 46.5
Peaxi162Scf00454g10013 Petunia axillaris HOM05D004648 ORTHO05D005782 1.9e-36 156.8 209 46.4
Sed0006831 Sechium edule HOM05D004648 ORTHO05D005782 1.9e-36 156.8 205 48.3
Sopen04g030220 Solanum pennellii HOM05D004648 ORTHO05D005782 2.5e-36 156.4 206 46.1
ClCG08G011630 Citrullus lanatus HOM05D004648 ORTHO05D005782 3.3e-36 156.0 212 48.6
Gohir.D05G221700 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.3e-36 156.0 207 45.4
PGR042G2328 Punica granatum HOM05D004648 ORTHO05D005782 3.3e-36 156.0 209 45.5
RcHm_v2.0_Chr2g0111021 Rosa chinensis HOM05D004648 ORTHO05D005782 9.6e-36 154.5 205 46.3
MD15G1387400 Malus domestica HOM05D004648 ORTHO05D005782 3.6e-35 152.5 201 47.3
Ah.03g139860 Amaranthus hybridus HOM05D004648 ORTHO05D005782 6.2e-35 151.8 204 44.1
AUR62003673 Chenopodium quinoa HOM05D004648 ORTHO05D005782 6.2e-35 151.8 213 41.8
Oeu054771.1 Olea europaea HOM05D004648 ORTHO05D005782 6.2e-35 151.8 205 43.9
EL10Ac6g15193 Beta vulgaris HOM05D004648 ORTHO05D005782 8.1e-35 151.4 203 44.3
Nitab4.5_0011537g0010 Nicotiana tabacum HOM05D004648 ORTHO05D005782 1.4e-34 150.6 206 44.7
Psat5g049360 Pisum sativum HOM05D004648 ORTHO05D005782 1.8e-34 150.2 194 49.5
DCAR_009556 Daucus carota HOM05D004648 ORTHO05D005782 2.4e-34 149.8 204 45.1
Ca_16010_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 3.1e-34 149.4 194 49.5
Cc07_g14000 Coffea canephora HOM05D004648 ORTHO05D005782 3.1e-34 149.4 213 42.3
Manes.13G100500 Manihot esculenta HOM05D004648 ORTHO05D005782 3.1e-34 149.4 207 44.9
Peaxi162Scf00085g00235 Petunia axillaris HOM05D004648 ORTHO05D005782 3.1e-34 149.4 201 45.8
TPR.G6370 Trifolium pratense HOM05D004648 ORTHO05D005782 4.0e-34 149.1 194 48.5
FvH4_1g19520 Fragaria vesca HOM05D004648 ORTHO05D005782 5.3e-34 148.7 205 45.4
MD15G1310800 Malus domestica HOM05D004648 ORTHO05D005782 5.3e-34 148.7 200 45.5
Prupe.6G203100 Prunus persica HOM05D004648 ORTHO05D005782 6.9e-34 148.3 201 44.8
Actinidia19623 Actinidia chinensis HOM05D004648 ORTHO05D005782 1.2e-33 147.5 209 43.1
Hma1.2p1_0802F.1_g220630 Hydrangea macrophylla HOM05D004648 ORTHO05D005782 1.2e-33 147.5 209 44.5
CAN.G475.10 Capsicum annuum HOM05D004648 ORTHO05D005782 1.5e-33 147.1 201 44.3
Lj1g0017346 Lotus japonicus HOM05D004648 ORTHO05D005782 2.0e-33 146.7 207 46.4
Cfa013807 Carpinus fangiana HOM05D004648 ORTHO05D005782 2.6e-33 146.4 204 44.1
Glyma.04G095900 Glycine max HOM05D004648 ORTHO05D005782 3.4e-33 146.0 206 46.1
QL09p018000 Quercus lobata HOM05D004648 ORTHO05D005782 3.4e-33 146.0 206 43.7
Lalb_Chr04g0252771 Lupinus albus HOM05D004648 ORTHO05D005782 4.5e-33 145.6 210 44.3
vmacro04645 Vaccinium macrocarpon HOM05D004648 ORTHO05D005782 4.5e-33 145.6 206 41.7
QL06p035918 Quercus lobata HOM05D004648 ORTHO05D005782 5.8e-33 145.2 211 40.8
Medtr3g100100 Medicago truncatula HOM05D004648 ORTHO05D005782 9.9e-33 144.4 194 47.4
Haze_03885 Corylus avellana HOM05D004648 ORTHO05D005782 2.2e-32 143.3 204 45.6
Migut.N02848 Erythranthe guttata HOM05D004648 ORTHO05D005782 2.2e-32 143.3 208 44.7
Manes.05G189800 Manihot esculenta HOM05D004648 ORTHO05D005782 3.8e-32 142.5 209 43.1
SGA_v2.0_scaffold48G17844 Striga asiatica HOM05D004648 ORTHO05D005782 4.9e-32 142.1 205 42.9
SEGI_01557 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 6.4e-32 141.7 208 44.7
Eucgr.F00428 Eucalyptus grandis HOM05D004648 ORTHO05D005782 1.4e-31 140.6 204 44.1
Cfa006874 Carpinus fangiana HOM05D004648 ORTHO05D005782 1.9e-31 140.2 204 45.1
MD08G1200200 Malus domestica HOM05D004648 ORTHO05D005782 1.9e-31 140.2 206 43.7
HanXRQChr09g0250941 Helianthus annuus HOM05D004648 ORTHO05D005782 2.4e-31 139.8 203 42.9
Rhsim07G0212500 Rhododendron simsii HOM05D004648 ORTHO05D005782 3.2e-31 139.4 196 43.4
Thecc.01G089300 Theobroma cacao HOM05D004648 ORTHO05D005782 3.2e-31 139.4 216 41.2
HPP92_003649 Vanilla planifolia HOM05D004648 ORTHO05D005782 3.2e-31 139.4 212 44.3
CDE02G1147 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 4.2e-31 139.0 197 41.1
VMungo1309G1710 Vigna mungo HOM05D004648 ORTHO05D005782 9.3e-31 137.9 215 40.5
MSTRG.24425 Avicennia marina HOM05D004648 ORTHO05D005782 1.2e-30 137.5 211 43.1
TWI74G0279 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.2e-30 137.5 207 42.0
TWI12G1102 Tripterygium wilfordii HOM05D004648 ORTHO05D005782 1.6e-30 137.1 200 46.0
Gohir.D11G053600 Gossypium hirsutum HOM05D004648 ORTHO05D005782 2.7e-30 136.3 216 40.7
Gorai.007G058400 Gossypium raimondii HOM05D004648 ORTHO05D005782 2.7e-30 136.3 212 40.1
FvH4_5g34561 Fragaria vesca HOM05D004648 ORTHO05D005782 4.6e-30 135.6 207 44.9
THA.LOC104801678 Tarenaya hassleriana HOM05D004648 ORTHO05D005782 4.6e-30 135.6 211 40.8
Glyma.06G097600 Glycine max HOM05D004648 ORTHO05D005782 7.9e-30 134.8 206 43.2
Phvul.009G035900 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 1.0e-29 134.4 205 42.9
Carub.0008s2638 Capsella rubella HOM05D004648 ORTHO05D005782 3.0e-29 132.9 209 40.7
Gohir.A11G050200 Gossypium hirsutum HOM05D004648 ORTHO05D005782 3.9e-29 132.5 212 39.2
AT5G65520 Arabidopsis thaliana HOM05D004648 ORTHO05D005782 6.7e-29 131.7 201 40.8
AL8G43110 Arabidopsis lyrata HOM05D004648 ORTHO05D005782 8.7e-29 131.3 201 40.8
Glyma.14G182600 Glycine max HOM05D004648 ORTHO05D005782 1.1e-28 131.0 204 43.1
Sc26g0003620 Simmondsia chinensis HOM05D004648 ORTHO05D005782 9.6e-28 127.9 205 42.4
COL.COLO4_27367 Corchorus olitorius HOM05D004648 ORTHO05D005782 1.6e-27 127.1 219 36.5
Zm00001eb235460 Zea mays HOM05D004648 ORTHO05D005782 3.6e-27 125.9 208 42.3
Duzib264G0833 Durio zibethinus HOM05D004648 ORTHO05D005782 6.2e-27 125.2 210 37.1
CARHR279500 Cardamine hirsuta HOM05D004648 ORTHO05D005782 1.1e-26 124.4 208 38.5
CDE04G0511 Ceratophyllum demersum HOM05D004648 ORTHO05D005782 1.8e-26 123.6 186 39.2
Lju188C4T4 Lonicera japonica HOM05D004648 ORTHO05D005782 3.1e-26 122.9 139 49.6
Phvul.003G288400 Phaseolus vulgaris HOM05D004648 ORTHO05D005782 9.0e-26 121.3 220 40.5
A09p09070 Brassica napus HOM05D004648 ORTHO05D005782 2.0e-25 120.2 198 38.9
BcaB04g20019 Brassica carinata HOM05D004648 ORTHO05D005782 2.6e-25 119.8 209 37.3
BraA09t36559Z Brassica rapa HOM05D004648 ORTHO05D005782 2.6e-25 119.8 198 38.9
BcaC04g23260 Brassica carinata HOM05D004648 ORTHO05D005782 3.4e-25 119.4 198 38.4
BolC9t53956H Brassica oleracea HOM05D004648 ORTHO05D005782 3.4e-25 119.4 198 38.4
ECA232G0149 Erigeron canadensis HOM05D000476 ORTHO05D005719 4.5e-25 119.0 159 42.8
arahy.Tifrunner.gnm1.ann1.AB919Y Arachis hypogaea HOM05D004648 ORTHO05D005782 5.8e-25 118.6 213 40.4
HanXRQChr15g0485271 Helianthus annuus HOM05D004648 ORTHO05D005782 5.8e-25 118.6 158 43.0
SEGI_08621 Sequoiadendron giganteum HOM05D004648 ORTHO05D005782 1.3e-24 117.5 205 39.0
Lj4g0004938 Lotus japonicus HOM05D004648 ORTHO05D005782 2.2e-24 116.7 211 40.8
arahy.Tifrunner.gnm1.ann1.S42CYX Arachis hypogaea HOM05D004648 ORTHO05D005782 2.9e-24 116.3 213 40.4
ECA247G1048 Erigeron canadensis HOM05D004648 ORTHO05D005782 2.9e-24 116.3 207 35.7
HanXRQChr02g0046211 Helianthus annuus HOM05D004648 ORTHO05D005782 4.9e-24 115.5 198 40.4
C09p10560 Brassica napus HOM05D004648 ORTHO05D005782 1.1e-23 114.4 192 38.5
Thhalv10005489m.g Eutrema salsugineum HOM05D004648 ORTHO05D005782 1.4e-23 114.0 200 37.5
VMungo0647G0422 Vigna mungo HOM05D004648 ORTHO05D005782 4.2e-23 112.5 201 41.8
Sp2g28620 Schrenkiella parvula HOM05D004648 ORTHO05D005782 5.5e-23 112.1 194 38.1
Mapoly0104s0024 Marchantia polymorpha HOM05D004648 ORTHO05D005782 1.2e-22 110.9 206 39.8
CANSAT01G3166 Cannabis sativa HOM05D004648 ORTHO05D005782 1.6e-22 110.5 216 34.7
Lalb_Chr08g0242581 Lupinus albus HOM05D004648 ORTHO05D005782 1.6e-22 110.5 214 37.9
Os02g0204000 Oryza sativa ssp. japonica HOM05D004648 ORTHO05D005782 5.1e-21 105.5 147 45.6
AagrBONN_evm.TU.Sc2ySwM_368.397 Anthoceros agrestis HOM05D004648 ORTHO05D005782 8.7e-21 104.8 203 35.5
Lsat_1_v5_gn_8_20321 Lactuca sativa HOM05D004648 ORTHO05D005782 2.5e-20 103.2 204 34.8
EL10Ac1g00504 Beta vulgaris HOM05D004648 ORTHO05D005782 9.6e-20 101.3 211 35.5
Sc26g0002870 Simmondsia chinensis HOM05D004648 ORTHO05D005782 1.3e-19 100.9 135 48.1
Medtr8g068400 Medicago truncatula HOM05D004648 ORTHO05D005782 4.8e-19 99.0 218 36.2
Sc26g0002990 Simmondsia chinensis HOM05D004648 ORTHO05D005782 4.8e-19 99.0 135 46.7
Glyma.08G278900 Glycine max HOM05D004648 ORTHO05D005782 3.1e-18 96.3 214 35.5
Ah.05g171370 Amaranthus hybridus HOM05D004648 ORTHO05D005782 4.0e-18 95.9 212 35.8
Psat4g116960 Pisum sativum HOM05D004648 ORTHO05D005782 1.5e-17 94.0 214 36.0
Ca_22619_v3 Cicer arietinum L. HOM05D004648 ORTHO05D005782 2.2e-16 90.1 137 42.3
EL10Ac2g03122 Beta vulgaris HOM05D004648 ORTHO05D005782 3.2e-15 86.3 113 44.2
DCAR_009557 Daucus carota HOM05D004648 ORTHO05D005782 5.5e-15 85.5 114 45.6


User provided reference genes

Program Settings