Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G277 Amborella trichopoda HOM05D005116 ORTHO05D005937 4.8e-192 674.5 375 100.0
Lalb_Chr03g0029531 Lupinus albus HOM05D005116 ORTHO05D005937 3.9e-61 239.6 364 45.1
Dinv13395 Davidia involucrata HOM05D005116 ORTHO05D005937 1.5e-60 237.7 215 62.3
TAR629G1139 Trochodendron aralioides HOM05D005116 ORTHO05D005937 4.3e-60 236.1 216 61.6
TWI59G1245 Tripterygium wilfordii HOM05D005116 ORTHO05D005937 6.3e-59 232.3 209 62.2
GSVIVG01020569001 Vitis vinifera HOM05D005116 ORTHO05D005937 1.1e-58 231.5 246 55.7
MBI07_g40350_MAGBIO Magnolia biondii HOM05D005116 ORTHO05D005937 1.4e-58 231.1 320 48.4
Gohir.A01G018800 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.8e-58 230.7 216 58.8
CSS0036411 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.4e-58 230.3 213 62.4
CSS0044850 Camellia sinensis var. sinensis HOM05D005116 ORTHO05D005937 2.4e-58 230.3 213 62.4
TAR627G0112 Trochodendron aralioides HOM05D005116 ORTHO05D005937 9.1e-58 228.4 219 57.5
arahy.Tifrunner.gnm1.ann1.KES1NF Arachis hypogaea HOM05D005116 ORTHO05D005937 1.5e-57 227.6 253 53.0
Glyma.12G116000 Glycine max HOM05D005116 ORTHO05D005937 1.5e-57 227.6 357 43.1
Gohir.D01G017400 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.5e-57 227.6 216 58.8
Sopen07g027830 Solanum pennellii HOM05D005116 ORTHO05D005937 1.5e-57 227.6 291 48.8
Solyc07g053860.3 Solanum lycopersicum HOM05D005116 ORTHO05D005937 2.0e-57 227.3 293 48.1
Cpa.g.sc83.62 Carica papaya HOM05D005116 ORTHO05D005937 3.4e-57 226.5 302 48.3
Aqoxy4G00731 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 4.5e-57 226.1 229 57.2
Gorai.002G019600 Gossypium raimondii HOM05D005116 ORTHO05D005937 4.5e-57 226.1 214 58.4
PSO832G2322 Papaver somniferum HOM05D005116 ORTHO05D005937 4.5e-57 226.1 253 53.0
Migut.M00082 Erythranthe guttata HOM05D005116 ORTHO05D005937 5.9e-57 225.7 231 55.0
Atru.chr6.2899 Acer truncatum HOM05D005116 ORTHO05D005937 1.0e-56 224.9 230 55.2
Potri.017G012500 Populus trichocarpa HOM05D005116 ORTHO05D005937 1.0e-56 224.9 208 58.2
Prupe.4G278300 Prunus persica HOM05D005116 ORTHO05D005937 1.0e-56 224.9 254 53.1
MD09G1244900 Malus domestica HOM05D005116 ORTHO05D005937 1.3e-56 224.6 351 43.3
Phvul.011G115315 Phaseolus vulgaris HOM05D005116 ORTHO05D005937 1.7e-56 224.2 359 42.6
Manes.13G144900 Manihot esculenta HOM05D005116 ORTHO05D005937 2.2e-56 223.8 220 57.3
Thecc.06G001400 Theobroma cacao HOM05D005116 ORTHO05D005937 2.2e-56 223.8 216 58.3
arahy.Tifrunner.gnm1.ann1.3GE2A8 Arachis hypogaea HOM05D005116 ORTHO05D005937 5.0e-56 222.6 253 52.2
Duzib052G0489 Durio zibethinus HOM05D005116 ORTHO05D005937 6.5e-56 222.2 250 54.8
Sc09g0006700 Simmondsia chinensis HOM05D005116 ORTHO05D005937 6.5e-56 222.2 272 48.9
Ciclev10015278m.g Citrus clementina HOM05D005116 ORTHO05D005937 8.5e-56 221.9 234 55.1
CsaV3_6G012810 Cucumis sativus L. HOM05D005116 ORTHO05D005937 8.5e-56 221.9 211 59.2
FAN18G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 8.5e-56 221.9 258 52.7
FAN13G1308 Fragaria x ananassa HOM05D005116 ORTHO05D005937 1.1e-55 221.5 228 55.7
Actinidia11017 Actinidia chinensis HOM05D005116 ORTHO05D005937 1.9e-55 220.7 207 59.9
PSO210G2339 Papaver somniferum HOM05D005116 ORTHO05D005937 1.9e-55 220.7 350 42.0
Eucgr.A01831 Eucalyptus grandis HOM05D005116 ORTHO05D005937 2.5e-55 220.3 218 56.0
FvH4_5g30750 Fragaria vesca HOM05D005116 ORTHO05D005937 2.5e-55 220.3 255 52.2
RcHm_v2.0_Chr7g0225641 Rosa chinensis HOM05D005116 ORTHO05D005937 3.2e-55 219.9 279 48.7
CANSAT64G0665 Cannabis sativa HOM05D005116 ORTHO05D005937 4.2e-55 219.5 208 56.7
RcHm_v2.0_Chr4g0410421 Rosa chinensis HOM05D005116 ORTHO05D005937 7.2e-55 218.8 228 54.4
Sed0010367 Sechium edule HOM05D005116 ORTHO05D005937 7.2e-55 218.8 204 56.9
Sc09g0004750 Simmondsia chinensis HOM05D005116 ORTHO05D005937 7.2e-55 218.8 202 58.4
Ciclev10015471m.g Citrus clementina HOM05D005116 ORTHO05D005937 3.6e-54 216.5 235 52.8
PGR042G3305 Punica granatum HOM05D005116 ORTHO05D005937 3.6e-54 216.5 221 53.8
DCAR_013025 Daucus carota HOM05D005116 ORTHO05D005937 1.0e-53 214.9 242 52.9
Ah.09g227990 Amaranthus hybridus HOM05D005116 ORTHO05D005937 1.4e-53 214.5 202 58.9
Duzib248G1083 Durio zibethinus HOM05D005116 ORTHO05D005937 1.4e-53 214.5 206 57.3
Hund01029 Selenicereus undatus HOM05D005116 ORTHO05D005937 1.8e-53 214.2 250 50.4
CiPaw.03G178700 Carya illinoinensis HOM05D005116 ORTHO05D005937 5.1e-53 212.6 210 57.1
THA.LOC104801168 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 5.1e-53 212.6 265 45.3
MELO3C013631.2 Cucumis melo HOM05D005116 ORTHO05D005937 8.8e-53 211.8 213 57.3
ClCG02G017750 Citrullus lanatus HOM05D005116 ORTHO05D005937 1.5e-52 211.1 214 57.9
Cc00_g12320 Coffea canephora HOM05D005116 ORTHO05D005937 2.0e-52 210.7 301 48.2
unitig_748.g8536 Utricularia gibba HOM05D005116 ORTHO05D005937 2.0e-52 210.7 223 54.7
SEGI_12795 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.6e-52 210.3 228 53.5
SEGI_15947 Sequoiadendron giganteum HOM05D005116 ORTHO05D005937 2.6e-52 210.3 228 53.5
HanXRQChr16g0525341 Helianthus annuus HOM05D005116 ORTHO05D005937 7.4e-52 208.8 204 53.9
Lj3g0009567 Lotus japonicus HOM05D005116 ORTHO05D005937 7.4e-52 208.8 209 55.5
Aa31LG1G8970 Aethionema arabicum HOM05D005116 ORTHO05D005937 9.7e-52 208.4 285 44.9
EL10Ac5g11143 Beta vulgaris HOM05D005116 ORTHO05D005937 9.7e-52 208.4 336 42.3
COL.COLO4_05946 Corchorus olitorius HOM05D005116 ORTHO05D005937 1.3e-51 208.0 252 50.0
CAN.G209.35 Capsicum annuum HOM05D005116 ORTHO05D005937 1.7e-51 207.6 293 47.1
AUR62029845 Chenopodium quinoa HOM05D005116 ORTHO05D005937 2.8e-51 206.8 357 42.0
HPP92_007017 Vanilla planifolia HOM05D005116 ORTHO05D005937 2.8e-51 206.8 221 53.8
Ca_18939_v3 Cicer arietinum L. HOM05D005116 ORTHO05D005937 3.7e-51 206.5 212 50.9
Thhalv10007808m.g Eutrema salsugineum HOM05D005116 ORTHO05D005937 4.8e-51 206.1 205 54.6
VMungo1127G1891 Vigna mungo HOM05D005116 ORTHO05D005937 8.2e-51 205.3 225 52.9
Rhsim06G0139500 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.8e-50 204.1 225 51.1
RhsimUnG0145200 Rhododendron simsii HOM05D005116 ORTHO05D005937 1.8e-50 204.1 225 51.1
HanXRQChr15g0470251 Helianthus annuus HOM05D005116 ORTHO05D005937 3.1e-50 203.4 221 50.2
SalBow7G1661 Salvia bowleyana HOM05D002934 ORTHO05D003937 4.1e-50 203.0 256 47.3
SGA_v2.0_scaffold108G30901 Striga asiatica HOM05D005116 ORTHO05D005937 4.1e-50 203.0 210 56.2
CARHR003090 Cardamine hirsuta HOM05D005116 ORTHO05D005937 1.2e-49 201.4 205 52.7
Sp1g02620 Schrenkiella parvula HOM05D005116 ORTHO05D005937 2.0e-49 200.7 293 43.3
ECA234G2480 Erigeron canadensis HOM05D005116 ORTHO05D005937 1.0e-48 198.4 208 51.9
Carub.0001s0286 Capsella rubella HOM05D005116 ORTHO05D005937 1.3e-48 198.0 255 47.5
vmacro15911 Vaccinium macrocarpon HOM05D005116 ORTHO05D005937 5.5e-47 192.6 159 59.7
Sabra17G0010300 Salix brachista HOM05D005116 ORTHO05D005937 1.2e-46 191.4 220 51.8
THA.LOC104826035 Tarenaya hassleriana HOM05D005116 ORTHO05D005937 1.2e-46 191.4 228 48.7
AT1G03760 Arabidopsis thaliana HOM05D005116 ORTHO05D005937 3.3e-44 183.3 288 42.0
Nitab4.5_0006721g0020 Nicotiana tabacum HOM05D005116 ORTHO05D005937 4.8e-43 179.5 341 40.8
Nitab4.5_0004959g0030 Nicotiana tabacum HOM05D005116 ORTHO05D005937 5.3e-42 176.0 338 39.6
Pp3c13_17680 Physcomitrium patens HOM05D005116 ORTHO05D005937 7.0e-42 175.6 203 50.7
SMO115G0247 Selaginella moellendorffii HOM05D005116 ORTHO05D005937 1.6e-41 174.5 237 45.6
QL08p039613 Quercus lobata HOM05D005116 ORTHO05D005937 5.9e-41 172.6 139 61.9
AL1G13310 Arabidopsis lyrata HOM05D005116 ORTHO05D005937 2.5e-39 167.2 285 39.3
CDE02G0148 Ceratophyllum demersum HOM05D005116 ORTHO05D005937 5.5e-39 166.0 130 63.1
Oeu035627.2 Olea europaea HOM05D005116 ORTHO05D005937 1.2e-38 164.9 176 53.4
Psat7g169080 Pisum sativum HOM05D005116 ORTHO05D005937 1.2e-38 164.9 270 39.6
Lj8A109T77 Lonicera japonica HOM05D005116 ORTHO05D005937 8.0e-38 162.2 172 56.4
TPR.G29254 Trifolium pratense HOM05D005116 ORTHO05D005937 8.0e-38 162.2 157 52.9
Haze_13200 Corylus avellana HOM05D005116 ORTHO05D005937 1.2e-36 158.3 168 52.4
PSO478G3970 Papaver somniferum HOM05D005116 ORTHO05D005937 2.6e-36 157.1 288 40.6
Mapoly0076s0049 Marchantia polymorpha HOM05D005116 ORTHO05D005937 2.2e-35 154.1 249 41.0
AUR62025873 Chenopodium quinoa HOM05D005116 ORTHO05D005937 3.7e-35 153.3 361 36.6
C05p02100 Brassica napus HOM05D005116 ORTHO05D005937 9.1e-34 148.7 153 52.3
Medtr4g078505 Medicago truncatula HOM05D005116 ORTHO05D005937 9.1e-34 148.7 361 34.9
AagrBONN_evm.TU.Sc2ySwM_344.4439 Anthoceros agrestis HOM05D005116 ORTHO05D005937 2.7e-33 147.1 166 49.4
Lsat_1_v5_gn_4_29780 Lactuca sativa HOM05D005116 ORTHO05D005937 2.7e-33 147.1 274 39.1
AUR62034810 Chenopodium quinoa HOM05D005116 ORTHO05D005937 5.9e-33 146.0 213 43.7
BraA10t42497Z Brassica rapa HOM05D005116 ORTHO05D005937 2.9e-32 143.7 153 49.7
BcaNung07372 Brassica carinata HOM05D005116 ORTHO05D005937 3.8e-32 143.3 257 40.5
BcaC05g24513 Brassica carinata HOM05D005116 ORTHO05D005937 8.5e-32 142.1 153 49.7
BolC5t28987H Brassica oleracea HOM05D005116 ORTHO05D005937 8.5e-32 142.1 153 49.7
Zm00001eb142460 Zea mays HOM05D005116 ORTHO05D005937 1.6e-30 137.9 168 49.4
Aqoxy4G00799 Aquilegia oxysepala HOM05D005116 ORTHO05D005937 2.1e-30 137.5 140 56.4
Actinidia11090 Actinidia chinensis HOM05D005116 ORTHO05D005937 3.0e-29 133.7 219 42.0
CBR_g73964 Chara braunii HOM05D005116 ORTHO05D005937 1.7e-27 127.9 241 36.9
AagrBONN_evm.TU.Sc2ySwM_368.1082 Anthoceros agrestis HOM05D005116 ORTHO05D005937 4.1e-26 123.2 127 51.2
A10p02290 Brassica napus HOM05D005116 ORTHO05D005937 1.0e-24 118.6 96 59.4
BcaC02g07427 Brassica carinata HOM05D005116 ORTHO05D005937 5.0e-24 116.3 135 43.7
Gorai.005G200500 Gossypium raimondii HOM05D005116 ORTHO05D005937 1.1e-23 115.2 309 33.7
Peaxi162Scf01415g00032 Petunia axillaris HOM05D005116 ORTHO05D005937 3.6e-22 110.2 145 49.0
Glyma.12G137500 Glycine max HOM05D005116 ORTHO05D005937 2.0e-20 104.4 76 64.5
Os01g0928300 Oryza sativa ssp. japonica HOM05D005116 ORTHO05D005937 1.7e-19 101.3 83 60.2
Nitab4.5_0001752g0050 Nicotiana tabacum HOM05D005116 ORTHO05D005937 1.8e-18 97.8 82 62.2
C04p67500 Brassica napus HOM05D005116 ORTHO05D005937 1.6e-17 94.7 201 34.8
Gohir.D02G178750 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.0e-16 92.0 310 31.0
BolC4t28247H Brassica oleracea HOM05D005116 ORTHO05D005937 1.3e-16 91.7 191 34.6
Cre13.g576350 Chlamydomonas reinhardtii HOM05D005116 ORTHO05D005937 1.1e-15 88.6 142 38.7
Gohir.A03G155650 Gossypium hirsutum HOM05D005116 ORTHO05D005937 1.6e-14 84.7 244 34.4
Lj8C109T10 Lonicera japonica HOM05D005116 ORTHO05D005937 6.2e-14 82.8 68 60.3
Nitab4.5_0000638g0150 Nicotiana tabacum HOM05D005116 ORTHO05D005937 2.9e-11 73.9 116 38.8
Oeu044722.1 Olea europaea HOM05D005116 ORTHO05D005937 6.4e-11 72.8 95 43.2
Oeu023568.1 Olea europaea HOM05D005116 ORTHO05D005937 5.4e-10 69.7 45 66.7
BcaC07g36947 Brassica carinata HOM05D005116 ORTHO05D005937 9.2e-10 68.9 219 29.7
C03p22830 Brassica napus HOM05D000229 ORTHO05D005937 9.2e-10 68.9 106 37.7
C08p00750 Brassica napus HOM05D005116 ORTHO05D031782 1.1e-07 62.0 216 29.2
Glyma.19G101401 Glycine max HOM05D000147 ORTHO05D005937 2.8e-06 57.4 52 55.8
MSTRG.25027 Avicennia marina HOM05D005116 ORTHO05D005937 3.6e-06 57.0 102 42.2
arahy.Tifrunner.gnm1.ann1.13T34P Arachis hypogaea HOM05D000168 ORTHO05D000811 6.2e-06 56.2 56 50.0


User provided reference genes

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