Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G237 Amborella trichopoda HOM05D005129 ORTHO05D005585 0.0e+00 2353.2 1351 100.0
TAR626G1389 Trochodendron aralioides HOM05D005129 ORTHO05D005585 9.9e-147 525.8 1134 33.4
MBI18_g10016_MAGBIO Magnolia biondii HOM05D005129 ORTHO05D005585 1.4e-137 495.4 1438 35.8
TAR633G0821 Trochodendron aralioides HOM05D005129 ORTHO05D005585 2.0e-115 421.8 732 36.1
Nn1g08322 Nelumbo nucifera HOM05D005129 ORTHO05D005585 2.4e-108 398.3 1425 34.6
Cfa000799 Carpinus fangiana HOM05D005129 ORTHO05D005585 1.3e-106 392.5 1070 30.5
Haze_05902 Corylus avellana HOM05D005129 ORTHO05D005585 5.0e-106 390.6 1069 30.8
QL05p063822 Quercus lobata HOM05D005129 ORTHO05D005585 8.5e-106 389.8 1062 30.1
PSO541G3520 Papaver somniferum HOM05D005129 ORTHO05D005585 2.7e-104 384.8 1072 31.3
Aqoxy1G02020_Aqoxy1G02021 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 7.4e-102 376.7 1120 31.2
CSS0016153 Camellia sinensis var. sinensis HOM05D005129 ORTHO05D005585 1.3e-98 365.9 1086 29.9
Potri.001G463700 Populus trichocarpa HOM05D005129 ORTHO05D005585 5.0e-98 364.0 1116 28.7
Gohir.A05G112850 Gossypium hirsutum HOM05D005129 ORTHO05D005585 7.4e-94 350.1 1098 29.6
Potri.011G161901 Populus trichocarpa HOM05D005129 ORTHO05D005585 7.4e-94 350.1 1123 29.1
Gorai.009G117400 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.7e-93 349.0 1091 29.7
Sabra11G0141700 Salix brachista HOM05D005129 ORTHO05D005585 3.7e-93 347.8 1143 28.7
CiPaw.09G143100 Carya illinoinensis HOM05D005129 ORTHO05D005585 1.9e-89 335.5 915 31.3
Ciclev10014031m.g Citrus clementina HOM05D005129 ORTHO05D005585 2.6e-86 325.1 1107 29.0
Thecc.06G015200 Theobroma cacao HOM05D005129 ORTHO05D005585 7.5e-86 323.6 1102 28.2
Prupe.4G095800 Prunus persica HOM05D005129 ORTHO05D005585 2.2e-85 322.0 962 30.5
GSVIVG01035591001 Vitis vinifera HOM05D005129 ORTHO05D005585 4.8e-85 320.9 710 33.2
Gohir.A10G007300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 6.3e-85 320.5 1091 30.1
Gohir.D10G007200 Gossypium hirsutum HOM05D005129 ORTHO05D005585 8.2e-85 320.1 1084 29.9
TWI63G1468 Tripterygium wilfordii HOM05D005129 ORTHO05D005585 7.0e-84 317.0 1101 28.9
Cpa.g.sc166.48 Carica papaya HOM05D005129 ORTHO05D005585 1.0e-82 313.2 1108 28.5
Gorai.011G007900 Gossypium raimondii HOM05D005129 ORTHO05D005585 1.7e-82 312.4 1079 29.5
Atru.chr3.3029 Acer truncatum HOM05D005129 ORTHO05D005585 1.1e-81 309.7 693 31.7
MELO3C002837.2 Cucumis melo HOM05D005129 ORTHO05D005585 1.1e-81 309.7 1145 27.2
CsaV3_1G037120 Cucumis sativus L. HOM05D005129 ORTHO05D005585 1.5e-81 309.3 1141 27.3
Rhsim03G0093400 Rhododendron simsii HOM05D005129 ORTHO05D005585 7.2e-81 307.0 1066 27.7
Rhsim06G0213800 Rhododendron simsii HOM05D005129 ORTHO05D005585 7.2e-81 307.0 1077 28.7
Gohir.D05G113300 Gossypium hirsutum HOM05D005129 ORTHO05D005585 2.6e-78 298.5 710 32.1
ClCG03G008270 Citrullus lanatus HOM05D005129 ORTHO05D005585 5.7e-78 297.4 1098 28.4
CANSAT35G1118 Cannabis sativa HOM05D005129 ORTHO05D005585 3.1e-76 291.6 1098 27.0
Sopen02g006450 Solanum pennellii HOM05D005129 ORTHO05D005585 1.6e-75 289.3 1066 28.1
Sed0027997 Sechium edule HOM05D005129 ORTHO05D005585 2.7e-75 288.5 1090 27.7
Manes.06G058900 Manihot esculenta HOM05D005129 ORTHO05D005585 1.3e-74 286.2 1119 27.3
Lj1C1160T1 Lonicera japonica HOM05D005129 ORTHO05D005585 3.8e-74 284.6 1229 26.5
Nitab4.5_0000076g0130 Nicotiana tabacum HOM05D005129 ORTHO05D005585 5.0e-74 284.3 1081 27.0
Nitab4.5_0002094g0030 Nicotiana tabacum HOM05D005129 ORTHO05D005585 1.1e-73 283.1 1054 27.5
vmacro03361 Vaccinium macrocarpon HOM05D005129 ORTHO05D005585 4.2e-73 281.2 1060 27.9
arahy.Tifrunner.gnm1.ann1.LUZ6WJ Arachis hypogaea HOM05D005129 ORTHO05D005585 1.0e-71 276.6 1083 27.2
Lalb_Chr04g0249051 Lupinus albus HOM05D005129 ORTHO05D005585 2.3e-71 275.4 695 31.9
Peaxi162Scf01909g00118 Petunia axillaris HOM05D005129 ORTHO05D005585 3.0e-71 275.0 1101 27.5
Cc09_g07500 Coffea canephora HOM05D005129 ORTHO05D005585 3.4e-70 271.6 1136 27.4
Oeu046929.1 Olea europaea HOM05D005129 ORTHO05D005585 3.7e-69 268.1 925 28.3
Glyma.14G032500 Glycine max HOM05D005129 ORTHO05D005585 1.8e-68 265.8 1056 26.7
LjContig00049g0025087 Lotus japonicus HOM05D005129 ORTHO05D005585 1.2e-67 263.1 1045 26.2
MD05G1268800 Malus domestica HOM05D005129 ORTHO05D005585 1.2e-67 263.1 1084 26.2
Phvul.008G197100 Phaseolus vulgaris HOM05D005129 ORTHO05D005585 1.6e-67 262.7 699 30.3
PGR083G2529 Punica granatum HOM05D005129 ORTHO05D005585 1.3e-66 259.6 1080 27.2
Glyma.02G281900 Glycine max HOM05D005129 ORTHO05D005585 1.7e-66 259.2 1087 26.3
Solyc02g022870.4 Solanum lycopersicum HOM05D005129 ORTHO05D005585 8.6e-66 256.9 689 30.2
arahy.Tifrunner.gnm1.ann1.40GDTE Arachis hypogaea HOM05D005129 ORTHO05D005585 4.3e-65 254.6 1429 26.7
TPR.G22269 Trifolium pratense HOM05D005129 ORTHO05D005585 4.3e-65 254.6 1080 27.2
VMungo0647G0154 Vigna mungo HOM05D005129 ORTHO05D005585 7.3e-65 253.8 1035 26.6
Ca_00871_v3 Cicer arietinum L. HOM05D005129 ORTHO05D005585 1.2e-64 253.1 1050 27.4
Medtr2g031380 Medicago truncatula HOM05D005129 ORTHO05D005585 2.1e-64 252.3 1035 27.4
Migut.M00948 Erythranthe guttata HOM05D005129 ORTHO05D005585 3.6e-64 251.5 1073 26.2
FAN25G2195 Fragaria x ananassa HOM05D005129 ORTHO05D005585 5.2e-63 247.7 1043 25.2
FAN11G1468 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.5e-62 246.1 1066 25.2
FAN21G1521 Fragaria x ananassa HOM05D005129 ORTHO05D005585 1.3e-61 243.0 1042 25.4
Dinv27170 Davidia involucrata HOM05D005129 ORTHO05D005585 1.7e-61 242.7 829 28.3
Solyc07g041330.3 Solanum lycopersicum HOM05D005129 ORTHO05D005585 2.2e-61 242.3 910 26.8
FvH4_3g10781 Fragaria vesca HOM05D005129 ORTHO05D005585 2.9e-61 241.9 1064 25.4
FAN16G1113 Fragaria x ananassa HOM05D005129 ORTHO05D005585 3.7e-61 241.5 1040 25.4
Sopen07g020720 Solanum pennellii HOM05D005129 ORTHO05D005585 9.2e-60 236.9 689 28.9
RcHm_v2.0_Chr5g0017511 Rosa chinensis HOM05D005129 ORTHO05D005585 1.6e-59 236.1 685 28.2
MD10G1247500 Malus domestica HOM05D005129 ORTHO05D005585 6.0e-59 234.2 707 28.3
THA.LOC104812690 Tarenaya hassleriana HOM05D005129 ORTHO05D005585 6.0e-59 234.2 1095 25.2
SGA_v2.0_scaffold1G00142 Striga asiatica HOM05D005129 ORTHO05D005585 3.0e-58 231.9 1079 25.8
Aqoxy7G00166 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.3e-57 228.4 425 36.2
Aqoxy7G00170 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.3e-57 228.4 425 36.2
Aqoxy88s004 Aquilegia oxysepala HOM05D005129 ORTHO05D005585 3.3e-57 228.4 425 36.2
CDE06G2236 Ceratophyllum demersum HOM05D005129 ORTHO05D005585 1.6e-56 226.1 1427 29.4
MELO3C033745.2 Cucumis melo HOM05D005129 ORTHO05D005585 2.3e-55 222.2 750 27.9
CAN.G39.32 Capsicum annuum HOM05D005129 ORTHO05D000007 1.7e-53 216.1 871 27.0
AT2G34780 Arabidopsis thaliana HOM05D005129 ORTHO05D005585 2.9e-53 215.3 1064 25.8
Hund21086 Selenicereus undatus HOM05D005129 ORTHO05D005585 2.9e-53 215.3 1037 24.2
AL4G30770 Arabidopsis lyrata HOM05D005129 ORTHO05D005585 8.3e-53 213.8 1066 25.7
Carub.0004s1647 Capsella rubella HOM05D005129 ORTHO05D005585 1.1e-52 213.4 724 27.8
CiPaw.16G039600 Carya illinoinensis HOM05D005129 ORTHO05D005585 4.1e-52 211.5 930 26.9
BcaC01g05762 Brassica carinata HOM05D005129 ORTHO05D005585 9.2e-52 210.3 910 25.5
BcaC02g11559 Brassica carinata HOM05D005129 ORTHO05D005585 1.2e-51 209.9 1049 25.1
DCAR_003834 Daucus carota HOM05D005129 ORTHO05D005585 1.6e-51 209.5 1026 25.9
Sc19g0000270 Simmondsia chinensis HOM05D005129 ORTHO05D005585 1.6e-51 209.5 974 26.0
Thhalv10016158m.g Eutrema salsugineum HOM05D005129 ORTHO05D005585 3.5e-51 208.4 1059 24.2
BolC4t27871H Brassica oleracea HOM05D005129 ORTHO05D005585 6.0e-51 207.6 1042 24.7
C04p13980 Brassica napus HOM05D005129 ORTHO05D005585 7.8e-51 207.2 1049 25.2
BolC4t22987H Brassica oleracea HOM05D005129 ORTHO05D005585 1.0e-50 206.8 1049 25.2
Sp4g17070 Schrenkiella parvula HOM05D005129 ORTHO05D005585 1.0e-50 206.8 1077 24.2
SalBow8G1057 Salvia bowleyana HOM05D005129 ORTHO05D005585 5.0e-50 204.5 1065 24.8
A05p10880 Brassica napus HOM05D005129 ORTHO05D005585 1.6e-48 199.5 1057 24.3
ECA246G0263 Erigeron canadensis HOM05D005129 ORTHO05D005585 6.8e-47 194.1 816 23.5
Aa31LG10G6520 Aethionema arabicum HOM05D005129 ORTHO05D005585 1.2e-46 193.4 523 29.1
BraA05t20033Z Brassica rapa HOM05D005129 ORTHO05D005585 2.6e-46 192.2 1065 24.1
Zm00001eb152060 Zea mays HOM05D005129 ORTHO05D005585 3.4e-46 191.8 1122 25.1
CARHR128940 Cardamine hirsuta HOM05D005129 ORTHO05D005585 8.3e-45 187.2 691 26.9
AUR62005921 Chenopodium quinoa HOM05D005129 ORTHO05D005585 1.9e-44 186.0 1039 24.1
Lsat_1_v5_gn_3_43520 Lactuca sativa HOM05D005129 ORTHO05D005585 1.9e-44 186.0 1046 23.0
BcaB06g28799 Brassica carinata HOM05D005129 ORTHO05D005585 5.4e-44 184.5 561 27.5
AUR62028142 Chenopodium quinoa HOM05D005129 ORTHO05D005585 2.7e-43 182.2 1032 22.9
BcaB02g09508 Brassica carinata HOM05D005129 ORTHO05D005585 4.6e-43 181.4 1051 24.6
HPP92_022552 Vanilla planifolia HOM05D005129 ORTHO05D005585 8.6e-42 177.2 1023 24.3
SGA_v2.0_scaffold333G49012 Striga asiatica HOM05D005129 ORTHO05D005585 2.4e-39 169.1 940 23.9
Ah.13g071200 Amaranthus hybridus HOM05D005129 ORTHO05D005585 4.0e-39 168.3 1044 23.1
EL10Ac3g05106 Beta vulgaris HOM05D005129 ORTHO05D005585 6.8e-39 167.5 1022 22.6
HanXRQChr03g0080681 Helianthus annuus HOM05D005129 ORTHO05D005585 3.5e-35 155.2 1040 22.3
FAN25G0785 Fragaria x ananassa HOM05D005129 ORTHO05D005585 5.1e-34 151.4 1001 22.9
Os01g0768700 Oryza sativa ssp. japonica HOM05D005129 ORTHO05D005585 1.2e-30 140.2 359 29.5
Dinv27171 Davidia involucrata HOM05D005129 ORTHO05D005585 1.5e-30 139.8 234 36.8
unitig_748.g7646 Utricularia gibba HOM05D005129 ORTHO05D005585 2.0e-30 139.4 479 26.3
C03p22490 Brassica napus HOM05D002581 ORTHO05D002828 2.4e-28 132.5 795 25.5
TPR.G8782 Trifolium pratense HOM05D000048 ORTHO05D004674 4.6e-27 128.3 292 29.8
Medtr5g090200 Medicago truncatula HOM05D005129 ORTHO05D005585 3.9e-26 125.2 291 29.9
Psat1g165880 Pisum sativum HOM05D005129 ORTHO05D005585 1.6e-24 119.8 777 26.3
SHI24815 Sapria himalayana HOM05D005129 ORTHO05D005585 4.5e-22 111.7 486 25.9
HPP92_022551 Vanilla planifolia HOM05D005129 ORTHO05D005585 1.1e-20 107.1 158 38.0
C04p63980 Brassica napus HOM05D002581 ORTHO05D002828 2.4e-20 105.9 328 27.1
BraA04t18160Z Brassica rapa HOM05D002581 ORTHO05D002828 1.2e-19 103.6 328 27.4
Actinidia00605 Actinidia chinensis HOM05D005129 ORTHO05D005585 2.3e-18 99.4 152 34.2
A04p26560 Brassica napus HOM05D002581 ORTHO05D002828 6.7e-18 97.8 328 25.9
Eucgr.D00091 Eucalyptus grandis HOM05D005129 ORTHO05D005585 6.2e-16 91.3 128 36.7
Ah.13g069630 Amaranthus hybridus HOM05D005129 ORTHO05D005585 3.4e-14 85.5 379 23.0
Aqoxy7G00168 Aquilegia oxysepala HOM05D019791 ORTHO05D021351 2.3e-10 72.8 176 35.8
PGSC0003DMG400003904 Solanum tuberosum HOM05D009171 ORTHO05D000440 3.9e-10 72.0 204 29.4
MELO3C005104.2 Cucumis melo HOM05D005129 ORTHO05D005585 6.7e-10 71.2 105 36.2
Eucgr.D00092 Eucalyptus grandis HOM05D005129 ORTHO05D005585 6.7e-10 71.2 647 23.5
Mapoly0049s0034 Marchantia polymorpha HOM05D019256 ORTHO05D005585 1.2e-06 60.5 378 20.4
Dinv27169 Davidia involucrata HOM05D005129 ORTHO05D005585 1.0e-05 57.4 149 32.2
SMO228G0186 Selaginella moellendorffii HOM05D019256 ORTHO05D023510 1.0e-05 57.4 182 26.4


User provided reference genes

Program Settings