Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G219 Amborella trichopoda HOM05D003847 ORTHO05D026554 7.9e-28 126.3 61 100.0
ATR0661G289 Amborella trichopoda HOM05D003847 ORTHO05D004976 6.3e-25 116.7 61 93.4
MELO3C006089.2 Cucumis melo HOM05D003847 ORTHO05D004976 1.0e-22 109.4 61 83.6
CsaV3_3G008710 Cucumis sativus L. HOM05D003847 ORTHO05D004976 1.0e-22 109.4 61 83.6
PSO478G2530 Papaver somniferum HOM05D003847 ORTHO05D004976 1.3e-22 109.0 61 86.9
PSO782G0912 Papaver somniferum HOM05D003847 ORTHO05D004976 1.3e-22 109.0 61 86.9
Sed0007018 Sechium edule HOM05D003847 ORTHO05D004976 1.3e-22 109.0 61 85.2
TWI59G0695 Tripterygium wilfordii HOM05D003847 ORTHO05D004976 1.7e-22 108.6 61 83.6
DCAR_008629 Daucus carota HOM05D003847 ORTHO05D004976 2.9e-22 107.8 58 87.9
Migut.N01455 Erythranthe guttata HOM05D003847 ORTHO05D004976 2.9e-22 107.8 58 87.9
CSS0029735 Camellia sinensis var. sinensis HOM05D003847 ORTHO05D004976 5.0e-22 107.1 61 82.0
MBI04_g26959_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D004976 5.0e-22 107.1 58 86.2
CAN.G78.110 Capsicum annuum HOM05D003847 ORTHO05D004976 8.5e-22 106.3 58 84.5
Nn1g01640 Nelumbo nucifera HOM05D003847 ORTHO05D004976 8.5e-22 106.3 61 82.0
SEGI_36957 Sequoiadendron giganteum HOM05D003847 ORTHO05D004976 8.5e-22 106.3 61 83.6
TPR.G22298 Trifolium pratense HOM05D003847 ORTHO05D004976 8.5e-22 106.3 59 84.7
vmacro20904 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 8.5e-22 106.3 59 83.1
arahy.Tifrunner.gnm1.ann1.U13Q33 Arachis hypogaea HOM05D003847 ORTHO05D004976 1.1e-21 105.9 61 82.0
Cfa003885 Carpinus fangiana HOM05D003847 ORTHO05D004976 1.1e-21 105.9 61 82.0
ClCG05G001330 Citrullus lanatus HOM05D003847 ORTHO05D004976 1.1e-21 105.9 61 83.6
Haze_15549 Corylus avellana HOM05D003847 ORTHO05D004976 1.1e-21 105.9 61 82.0
DCAR_025211 Daucus carota HOM05D003847 ORTHO05D004976 1.1e-21 105.9 61 82.0
CANSAT56G2934 Cannabis sativa HOM05D003847 ORTHO05D004976 1.4e-21 105.5 61 83.6
Lalb_Chr04g0259201 Lupinus albus HOM05D003847 ORTHO05D004976 1.9e-21 105.1 61 80.3
Gohir.A11G091500 Gossypium hirsutum HOM05D003847 ORTHO05D004976 2.5e-21 104.8 61 80.3
Gohir.D11G096200 Gossypium hirsutum HOM05D003847 ORTHO05D004976 2.5e-21 104.8 61 80.3
Gorai.007G102500 Gossypium raimondii HOM05D003847 ORTHO05D004976 2.5e-21 104.8 61 80.3
Lj9C587T13 Lonicera japonica HOM05D003847 ORTHO05D004976 2.5e-21 104.8 61 82.0
Solyc01g094930.3 Solanum lycopersicum HOM05D003847 ORTHO05D004976 2.5e-21 104.8 58 82.8
Sopen01g038710 Solanum pennellii HOM05D003847 ORTHO05D004976 2.5e-21 104.8 58 82.8
Aqoxy5G04080 Aquilegia oxysepala HOM05D003847 ORTHO05D004976 3.2e-21 104.4 58 82.8
arahy.Tifrunner.gnm1.ann1.9YV9D4 Arachis hypogaea HOM05D003847 ORTHO05D004976 3.2e-21 104.4 61 80.3
arahy.Tifrunner.gnm1.ann1.P1PLPP Arachis hypogaea HOM05D003847 ORTHO05D004976 3.2e-21 104.4 61 80.3
Medtr7g078760 Medicago truncatula HOM05D003847 ORTHO05D004976 3.2e-21 104.4 59 83.1
Peaxi162Scf00020g01122 Petunia axillaris HOM05D003847 ORTHO05D004976 3.2e-21 104.4 58 82.8
SalBow5G2471 Salvia bowleyana HOM05D003847 ORTHO05D004976 3.2e-21 104.4 58 84.5
Sc26g0000820 Simmondsia chinensis HOM05D003847 ORTHO05D004976 3.2e-21 104.4 61 83.6
GSVIVG01026981001 Vitis vinifera HOM05D003847 ORTHO05D004976 3.2e-21 104.4 61 82.0
Actinidia02826 Actinidia chinensis HOM05D003847 ORTHO05D004976 4.2e-21 104.0 61 80.3
MSTRG.4846 Avicennia marina HOM05D003847 ORTHO05D004976 4.2e-21 104.0 61 82.0
Ciclev10020054m.g Citrus clementina HOM05D003847 ORTHO05D004976 4.2e-21 104.0 61 80.3
Lsat_1_v5_gn_4_34641 Lactuca sativa HOM05D003847 ORTHO05D004976 4.2e-21 104.0 58 84.5
Manes.05G031000 Manihot esculenta HOM05D003847 ORTHO05D004976 4.2e-21 104.0 58 84.5
arahy.Tifrunner.gnm1.ann1.W45FS6 Arachis hypogaea HOM05D003847 ORTHO05D004976 5.5e-21 103.6 61 80.3
AUR62022605 Chenopodium quinoa HOM05D003847 ORTHO05D004976 5.5e-21 103.6 61 80.3
Cc02_g38410 Coffea canephora HOM05D003847 ORTHO05D004976 5.5e-21 103.6 58 86.2
COL.COLO4_12761 Corchorus olitorius HOM05D003847 ORTHO05D004976 5.5e-21 103.6 61 80.3
Eucgr.D02317 Eucalyptus grandis HOM05D003847 ORTHO05D004976 5.5e-21 103.6 61 78.7
MD01G1069400 Malus domestica HOM05D003847 ORTHO05D004976 5.5e-21 103.6 58 84.5
QL04p055042 Quercus lobata HOM05D003847 ORTHO05D004976 5.5e-21 103.6 59 83.1
Thecc.01G354200 Theobroma cacao HOM05D003847 ORTHO05D004976 5.5e-21 103.6 61 80.3
TAR375G0471 Trochodendron aralioides HOM05D003847 ORTHO05D004976 5.5e-21 103.6 61 80.3
Duzib138G0396 Durio zibethinus HOM05D003847 ORTHO05D004976 7.2e-21 103.2 61 80.3
Hund16669 Selenicereus undatus HOM05D003847 ORTHO05D004976 7.2e-21 103.2 58 84.5
Dinv43851 Davidia involucrata HOM05D003847 ORTHO05D004976 9.3e-21 102.8 58 84.5
Hma1.2p1_0627F.1_g191710 Hydrangea macrophylla HOM05D003847 ORTHO05D004976 9.3e-21 102.8 58 82.8
Cpa.g.sc184.22 Carica papaya HOM05D003847 ORTHO05D004976 1.2e-20 102.4 59 84.7
Ca_00820_v3 Cicer arietinum L. HOM05D003847 ORTHO05D004976 1.2e-20 102.4 59 83.1
Duzib133G1387 Durio zibethinus HOM05D003847 ORTHO05D004976 1.6e-20 102.1 61 78.7
HanXRQChr17g0562361 Helianthus annuus HOM05D003847 ORTHO05D004976 1.6e-20 102.1 58 82.8
Oeu036597.2 Olea europaea HOM05D003847 ORTHO05D004976 1.6e-20 102.1 58 82.8
VMungo1383G0817 Vigna mungo HOM05D003847 ORTHO05D004976 1.6e-20 102.1 61 78.7
EL10Ac1g00369 Beta vulgaris HOM05D003847 ORTHO05D004976 2.1e-20 101.7 61 78.7
CiPaw.01G065300 Carya illinoinensis HOM05D003847 ORTHO05D004976 2.1e-20 101.7 58 81.0
ECA234G3268 Erigeron canadensis HOM05D003847 ORTHO05D004976 2.1e-20 101.7 58 82.8
Nitab4.5_0001269g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 2.1e-20 101.7 58 81.0
Phvul.008G059300 Phaseolus vulgaris HOM05D003847 ORTHO05D004976 2.1e-20 101.7 61 78.7
Sabra14G0064600 Salix brachista HOM05D003847 ORTHO05D004976 2.1e-20 101.7 58 81.0
CDE11G0931 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 2.7e-20 101.3 58 82.8
FvH4_7g15083 Fragaria vesca HOM05D003847 ORTHO05D004976 2.7e-20 101.3 58 81.0
FAN10G0014 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.7e-20 101.3 58 81.0
Glyma.18G237300 Glycine max HOM05D003847 ORTHO05D004976 2.7e-20 101.3 61 78.7
Potri.002G162700 Populus trichocarpa HOM05D003847 ORTHO05D004976 2.7e-20 101.3 58 81.0
PGR042G1058 Punica granatum HOM05D003847 ORTHO05D004976 2.7e-20 101.3 58 82.8
RcHm_v2.0_Chr1g0357211 Rosa chinensis HOM05D003847 ORTHO05D004976 2.7e-20 101.3 58 81.0
Nitab4.5_0003779g0180 Nicotiana tabacum HOM05D003847 ORTHO05D004976 6.1e-20 100.1 58 81.0
Potri.014G088900 Populus trichocarpa HOM05D003847 ORTHO05D004976 6.1e-20 100.1 58 79.3
Prupe.2G175500 Prunus persica HOM05D003847 ORTHO05D004976 6.1e-20 100.1 58 81.0
AUR62004399 Chenopodium quinoa HOM05D003847 ORTHO05D004976 7.9e-20 99.8 61 77.0
FAN03G0710 Fragaria x ananassa HOM05D003847 ORTHO05D004976 7.9e-20 99.8 58 79.3
Glyma.09G255600 Glycine max HOM05D003847 ORTHO05D004976 7.9e-20 99.8 61 77.0
CDE09G0314 Ceratophyllum demersum HOM05D003847 ORTHO05D004976 1.8e-19 98.6 58 79.3
TAR629G0433 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.8e-19 98.6 58 79.3
Mapoly0151s0045 Marchantia polymorpha HOM05D003847 ORTHO05D004976 2.3e-19 98.2 61 78.7
Pp3c12_25070 Physcomitrium patens HOM05D003847 ORTHO05D004976 2.3e-19 98.2 58 81.0
Sabra02G0147800 Salix brachista HOM05D003847 ORTHO05D004976 2.3e-19 98.2 58 79.3
Sabra02G0148200 Salix brachista HOM05D003847 ORTHO05D004976 2.3e-19 98.2 58 79.3
Os02g0680400 Oryza sativa ssp. japonica HOM05D003847 ORTHO05D004976 3.0e-19 97.8 58 79.3
Zm00001eb187240 Zea mays HOM05D003847 ORTHO05D004976 3.9e-19 97.4 58 79.3
Pp3c4_3300 Physcomitrium patens HOM05D003847 ORTHO05D004976 5.1e-19 97.1 61 77.0
SGA_v2.0_scaffold43G16402 Striga asiatica HOM05D003847 ORTHO05D004976 5.1e-19 97.1 58 82.8
THA.LOC104817033 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 5.1e-19 97.1 58 81.0
THA.LOC104825858 Tarenaya hassleriana HOM05D003847 ORTHO05D004976 5.1e-19 97.1 58 81.0
HPP92_022235 Vanilla planifolia HOM05D003847 ORTHO05D004976 5.1e-19 97.1 62 77.4
Nitab4.5_0011900g0010 Nicotiana tabacum HOM05D003847 ORTHO05D004976 6.7e-19 96.7 69 71.0
MSTRG.28227 Avicennia marina HOM05D003847 ORTHO05D004976 8.7e-19 96.3 58 77.6
FAN01G0997 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-18 95.9 58 77.6
FAN03G1748 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-18 95.9 58 77.6
FAN06G3510 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-18 95.9 58 77.6
FAN10G1372 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-18 95.9 58 77.6
FAN10G2219 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.1e-18 95.9 58 77.6
Lj1g0024026 Lotus japonicus HOM05D003847 ORTHO05D004976 1.1e-18 95.9 58 75.9
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 1.1e-18 95.9 61 73.8
RcHm_v2.0_Chr1g0357201 Rosa chinensis HOM05D003847 ORTHO05D004976 4.3e-18 94.0 58 75.9
Atru.chr5.1381 Acer truncatum HOM05D003847 ORTHO05D004976 5.7e-18 93.6 57 77.2
AagrBONN_evm.TU.Sc2ySwM_344.5530 Anthoceros agrestis HOM05D003847 ORTHO05D004976 5.7e-18 93.6 58 75.9
SMO364G0773 Selaginella moellendorffii HOM05D003847 ORTHO05D004976 5.7e-18 93.6 58 77.6
Nitab4.5_0001702g0130 Nicotiana tabacum HOM05D003847 ORTHO05D004976 7.4e-18 93.2 66 71.2
FAN10G3576 Fragaria x ananassa HOM05D003847 ORTHO05D004976 9.7e-18 92.8 52 78.8
Hund27252 Selenicereus undatus HOM05D003847 ORTHO05D004976 9.7e-18 92.8 60 70.0
BolC9t53000H Brassica oleracea HOM05D003847 ORTHO05D004976 1.3e-17 92.4 58 79.3
FvH4_7g15084 Fragaria vesca HOM05D003847 ORTHO05D004976 2.2e-17 91.7 60 68.3
AL6G52080 Arabidopsis lyrata HOM05D003847 ORTHO05D004976 2.8e-17 91.3 58 77.6
AT4G01320 Arabidopsis thaliana HOM05D003847 ORTHO05D004976 2.8e-17 91.3 58 77.6
BcaB01g02281 Brassica carinata HOM05D003847 ORTHO05D004976 2.8e-17 91.3 58 77.6
BcaC04g24142 Brassica carinata HOM05D003847 ORTHO05D004976 2.8e-17 91.3 58 77.6
A09p00040 Brassica napus HOM05D003847 ORTHO05D004976 2.8e-17 91.3 58 77.6
C09p00660 Brassica napus HOM05D003847 ORTHO05D004976 2.8e-17 91.3 58 77.6
BraA09t35735Z Brassica rapa HOM05D003847 ORTHO05D004976 2.8e-17 91.3 58 77.6
CARHR249000 Cardamine hirsuta HOM05D003847 ORTHO05D004976 2.8e-17 91.3 58 77.6
CBR_g23782 Chara braunii HOM05D003847 ORTHO05D004976 2.8e-17 91.3 52 80.8
FAN06G0785 Fragaria x ananassa HOM05D003847 ORTHO05D004976 3.7e-17 90.9 59 69.5
vmacro04325 Vaccinium macrocarpon HOM05D003847 ORTHO05D004976 6.3e-17 90.1 59 72.9
Carub.0006s3638 Capsella rubella HOM05D003847 ORTHO05D004976 8.2e-17 89.7 58 75.9
FAN06G4922 Fragaria x ananassa HOM05D003847 ORTHO05D004976 8.2e-17 89.7 52 76.9
Mapoly1163s0001 Marchantia polymorpha HOM05D003847 ORTHO05D026554 8.2e-17 89.7 61 75.4
RcHm_v2.0_Chr1g0357271 Rosa chinensis HOM05D003847 ORTHO05D004976 8.2e-17 89.7 59 69.5
BcaB01g02153 Brassica carinata HOM05D003847 ORTHO05D004976 1.1e-16 89.4 58 75.9
BcaC01g06856 Brassica carinata HOM05D003847 ORTHO05D004976 1.1e-16 89.4 58 75.9
A03p31980 Brassica napus HOM05D003847 ORTHO05D004976 1.1e-16 89.4 58 75.9
C03p39000 Brassica napus HOM05D003847 ORTHO05D004976 1.1e-16 89.4 58 75.9
BolC3t16172H Brassica oleracea HOM05D003847 ORTHO05D004976 1.1e-16 89.4 58 75.9
BraA03t12370Z Brassica rapa HOM05D003847 ORTHO05D004976 1.1e-16 89.4 58 75.9
Thhalv10028603m.g Eutrema salsugineum HOM05D003847 ORTHO05D004976 1.1e-16 89.4 58 75.9
Sp6g00820 Schrenkiella parvula HOM05D003847 ORTHO05D004976 1.1e-16 89.4 58 75.9
FAN06G4494 Fragaria x ananassa HOM05D003847 ORTHO05D004976 4.1e-16 87.4 52 75.0
QL12p031965 Quercus lobata HOM05D003847 ORTHO05D004976 5.3e-16 87.0 60 71.7
HanXRQChr16g0521861 Helianthus annuus HOM05D003847 ORTHO05D004976 1.2e-15 85.9 53 75.5
FAN10G3432 Fragaria x ananassa HOM05D003847 ORTHO05D004976 2.2e-14 81.6 49 73.5
HanXRQChr16g0521851 Helianthus annuus HOM05D003847 ORTHO05D004976 5.0e-14 80.5 53 75.5
FAN01G2116 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.4e-13 79.0 47 74.5
FAN10G2623 Fragaria x ananassa HOM05D003847 ORTHO05D004976 1.4e-13 79.0 47 74.5
Cre07.g356150 Chlamydomonas reinhardtii HOM05D003847 ORTHO05D004976 2.5e-13 78.2 53 66.0
Oeu015226.2 Olea europaea HOM05D003847 ORTHO05D004976 3.2e-13 77.8 52 71.2
RcHm_v2.0_Chr1g0357221 Rosa chinensis HOM05D003847 ORTHO05D026554 1.5e-10 68.9 37 81.1
Medtr8g028680 Medicago truncatula HOM05D003847 ORTHO05D004976 2.2e-09 65.1 58 55.2
PRCOL_00003828 Prasinoderma coloniale HOM05D003847 ORTHO05D004976 3.7e-09 64.3 58 56.9


User provided reference genes

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