Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 1.0e-284 982.6 472 100.0
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 6.0e-184 647.9 484 67.4
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 7.1e-177 624.4 478 66.1
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.7e-176 622.5 466 67.2
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 8.7e-175 617.5 479 67.0
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 9.7e-174 614.0 476 64.5
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 9.7e-174 614.0 474 65.8
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.4e-172 610.1 474 65.4
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 1.8e-172 609.8 484 65.1
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 1.8e-172 609.8 473 65.3
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 1.8e-172 609.8 473 65.5
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 2.4e-172 609.4 465 67.1
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 2.4e-172 609.4 478 65.3
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 5.3e-172 608.2 479 65.1
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 9.0e-172 607.4 493 63.5
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 5.9e-171 604.7 483 63.6
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 1.7e-170 603.2 467 64.9
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 3.8e-170 602.1 484 64.3
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 6.5e-170 601.3 484 64.7
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 8.5e-170 600.9 483 62.9
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 1.4e-169 600.1 490 62.7
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.4e-169 600.1 461 65.9
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 1.4e-169 600.1 488 64.1
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 1.9e-169 599.7 468 64.1
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 1.9e-169 599.7 468 64.1
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 1.9e-169 599.7 473 64.5
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 3.2e-169 599.0 485 64.1
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 3.2e-169 599.0 476 64.3
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 4.2e-169 598.6 473 63.8
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 4.2e-169 598.6 468 63.9
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 9.3e-169 597.4 468 63.7
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 1.2e-168 597.0 477 63.9
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.0e-167 594.0 471 63.5
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 2.3e-167 592.8 474 64.6
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 3.9e-167 592.0 476 62.6
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 3.9e-167 592.0 481 63.8
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 3.9e-167 592.0 486 63.2
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 5.1e-167 591.7 468 63.2
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 1.1e-166 590.5 473 63.0
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.9e-166 589.7 468 63.9
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.9e-166 589.7 477 63.7
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 3.3e-166 589.0 475 64.2
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 7.4e-166 587.8 472 62.7
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 9.7e-166 587.4 472 63.3
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 1.7e-165 586.6 474 63.1
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 2.2e-165 586.3 480 62.1
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 2.8e-165 585.9 468 63.5
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 1.1e-164 583.9 473 63.0
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 1.1e-164 583.9 458 64.0
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.4e-164 583.6 476 63.2
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 2.4e-164 582.8 479 62.8
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 4.1e-164 582.0 458 64.0
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 1.5e-163 580.1 472 62.1
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 1.5e-163 580.1 469 64.0
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 2.0e-163 579.7 473 62.8
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 3.4e-163 578.9 468 62.8
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 2.9e-162 575.9 460 64.8
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 8.5e-162 574.3 494 59.9
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.1e-161 573.9 475 62.1
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 1.9e-161 573.2 526 57.8
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.9e-161 573.2 470 63.6
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 2.5e-161 572.8 490 61.4
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 5.5e-161 571.6 481 61.1
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 1.6e-160 570.1 473 62.8
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.7e-160 568.5 468 63.5
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 3.0e-159 565.8 510 60.0
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 1.5e-158 563.5 481 60.3
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 5.7e-158 561.6 472 60.6
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 1.5e-155 553.5 468 62.2
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 2.0e-155 553.1 475 58.9
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 1.9e-153 546.6 438 63.2
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 3.2e-153 545.8 468 60.7
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 3.2e-153 545.8 544 54.8
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 2.7e-152 542.7 482 58.5
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 1.5e-150 537.0 455 61.1
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 2.0e-150 536.6 467 59.5
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 5.7e-150 535.0 466 59.9
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 5.0e-146 521.9 453 58.7
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 5.0e-146 521.9 462 59.5
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 1.5e-145 520.4 467 58.7
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 7.2e-145 518.1 463 58.5
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 1.6e-144 516.9 468 59.4
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 4.0e-143 512.3 467 56.1
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 4.4e-142 508.8 475 56.4
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 4.5e-139 498.8 480 55.6
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 7.7e-139 498.0 407 61.7
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 4.7e-136 488.8 388 64.7
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.4e-135 487.3 508 52.2
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 3.0e-135 486.1 456 56.8
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 2.2e-133 479.9 471 55.8
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 2.8e-133 479.6 278 80.2
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 4.1e-132 475.7 451 54.5
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 4.1e-132 475.7 378 63.5
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 7.7e-131 471.5 291 76.3
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.3e-130 470.7 405 60.7
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 3.8e-130 469.2 462 53.2
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 6.1e-128 461.8 491 52.7
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 4.4e-126 455.7 541 48.1
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 2.0e-123 446.8 445 55.3
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 1.0e-122 444.5 466 51.9
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.5e-121 440.7 504 48.4
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.1e-120 436.8 461 53.8
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 4.7e-120 435.6 264 76.9
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 1.9e-116 423.7 371 60.6
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 2.1e-112 410.2 384 56.5
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 9.8e-110 401.4 435 50.8
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 1.4e-108 397.5 849 33.5
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 2.4e-108 396.7 489 48.3
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 1.1e-95 354.8 333 56.5
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 4.4e-94 349.4 466 45.3
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 2.2e-93 347.1 228 68.9
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 8.7e-90 335.1 389 50.1
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 8.7e-90 335.1 594 37.2
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 6.0e-83 312.4 473 43.1
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 3.3e-81 306.6 423 45.4
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 5.6e-81 305.8 456 39.7
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 1.6e-80 304.3 320 52.5
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 1.7e-77 294.3 447 38.5
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.6e-75 287.7 191 69.6
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 1.3e-64 251.5 282 46.1
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.5e-57 228.0 132 80.3
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 2.2e-56 224.2 129 80.6
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 1.1e-55 221.9 299 41.5
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.0e-53 215.3 385 39.2
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 1.4e-52 211.5 284 39.8
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 7.4e-49 199.1 113 79.6
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.8e-42 177.9 103 79.6
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 2.0e-33 147.9 86 80.2
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 9.1e-23 112.5 76 69.7
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 1.2e-19 102.1 90 57.8
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 2.1e-19 101.3 60 75.0
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 2.1e-11 74.7 111 37.8
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 2.8e-11 74.3 41 78.0
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 6.1e-11 73.2 51 72.5
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 3.0e-10 70.9 59 61.0
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 3.7e-08 63.9 49 61.2
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 1.1e-07 62.4 94 40.4
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 2.7e-06 57.8 73 42.5
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 3.5e-06 57.4 43 65.1


User provided reference genes

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