Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G199 Amborella trichopoda HOM05D004268 ORTHO05D004958 5.8e-50 200.7 108 100.0
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 9.1e-11 70.5 114 43.9
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 2.6e-10 68.9 80 52.5
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 2.6e-10 68.9 80 52.5
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 2.6e-10 68.9 80 52.5
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 7.7e-10 67.4 85 50.6
Phvul.011G009700 Phaseolus vulgaris HOM05D004268 ORTHO05D004958 7.7e-10 67.4 114 43.0
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 2.2e-09 65.9 67 55.2
Duzib138G1697 Durio zibethinus HOM05D004268 ORTHO05D004958 2.9e-09 65.5 118 42.4
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 2.9e-09 65.5 119 44.5
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 2.9e-09 65.5 112 46.4
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 3.8e-09 65.1 112 42.9
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 3.8e-09 65.1 66 53.0
MBI04_g40114_MAGBIO Magnolia biondii HOM05D000074 ORTHO05D000220 3.8e-09 65.1 114 46.5
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 5.0e-09 64.7 73 52.1
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 5.0e-09 64.7 107 41.1
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 5.0e-09 64.7 82 48.8
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 5.0e-09 64.7 66 54.5
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 8.5e-09 63.9 82 47.6
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 8.5e-09 63.9 113 41.6
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 8.5e-09 63.9 105 40.0
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 1.1e-08 63.5 109 42.2
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.1e-08 63.5 115 41.7
Ciclev10033132m.g Citrus clementina HOM05D004268 ORTHO05D004958 1.1e-08 63.5 63 57.1
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 1.1e-08 63.5 115 42.6
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 1.1e-08 63.5 110 46.4
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 1.1e-08 63.5 119 43.7
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 1.5e-08 63.2 114 42.1
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 1.5e-08 63.2 115 42.6
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 1.5e-08 63.2 118 43.2
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 1.9e-08 62.8 65 55.4
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 1.9e-08 62.8 106 40.6
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 1.9e-08 62.8 114 46.5
MBI02_g05661_MAGBIO Magnolia biondii HOM05D004268 ORTHO05D004958 1.9e-08 62.8 68 55.9
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.9e-08 62.8 115 46.1
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 2.5e-08 62.4 84 51.2
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.2e-08 62.0 115 41.7
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 3.2e-08 62.0 112 42.0
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 3.2e-08 62.0 114 46.5
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 4.2e-08 61.6 83 53.0
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 5.5e-08 61.2 107 42.1
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 5.5e-08 61.2 114 40.4
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 5.5e-08 61.2 114 40.4
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 5.5e-08 61.2 114 40.4
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 5.5e-08 61.2 73 46.6
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 9.4e-08 60.5 114 40.4
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 9.4e-08 60.5 118 44.1
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 9.4e-08 60.5 110 42.7
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 9.4e-08 60.5 114 39.5
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.2e-07 60.1 107 39.3
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 1.6e-07 59.7 115 43.5
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 1.6e-07 59.7 116 39.7
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.6e-07 59.7 111 45.9
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 1.6e-07 59.7 85 47.1
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 1.6e-07 59.7 113 38.9
Thecc.01G409600 Theobroma cacao HOM05D004268 ORTHO05D004958 1.6e-07 59.7 116 41.4
SEGI_11181 Sequoiadendron giganteum HOM05D004268 ORTHO05D004958 2.1e-07 59.3 119 40.3
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 2.7e-07 58.9 109 39.4
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 2.7e-07 58.9 119 41.2
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 2.7e-07 58.9 112 44.6
CAN.G821.8 Capsicum annuum HOM05D004268 ORTHO05D004958 3.6e-07 58.5 69 53.6
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.6e-07 58.5 120 40.8
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 4.7e-07 58.2 112 42.9
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 4.7e-07 58.2 82 45.1
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 4.7e-07 58.2 122 42.6
Duzib133G0767 Durio zibethinus HOM05D004268 ORTHO05D004958 4.7e-07 58.2 115 43.5
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 4.7e-07 58.2 68 52.9
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.7e-07 58.2 114 41.2
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 4.7e-07 58.2 114 41.2
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 4.7e-07 58.2 111 40.5
Os02g0581100 Oryza sativa ssp. japonica HOM05D004268 ORTHO05D004958 4.7e-07 58.2 125 36.0
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 4.7e-07 58.2 80 41.2
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 6.1e-07 57.8 115 44.3
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 6.1e-07 57.8 108 45.4
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 8.0e-07 57.4 112 41.1
CSS0020424 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 8.0e-07 57.4 70 54.3
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 8.0e-07 57.4 109 40.4
Hma1.2p1_0495F.1_g165730 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 8.0e-07 57.4 32 75.0
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 8.0e-07 57.4 116 42.2
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 8.0e-07 57.4 118 36.4
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 1.0e-06 57.0 119 42.0
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 1.0e-06 57.0 114 41.2
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 1.0e-06 57.0 119 42.0
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 1.0e-06 57.0 86 44.2
THA.LOC104816876 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 1.0e-06 57.0 72 48.6
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.0e-06 57.0 109 41.3
TAR633G1399 Trochodendron aralioides HOM05D004268 ORTHO05D004958 1.0e-06 57.0 121 41.3
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 1.4e-06 56.6 106 39.6
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 1.8e-06 56.2 63 52.4
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 2.3e-06 55.8 110 41.8
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 2.3e-06 55.8 108 37.0
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 2.3e-06 55.8 115 39.1
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 3.0e-06 55.5 37 78.4
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 4.0e-06 55.1 39 69.2
Eucgr.B03692 Eucalyptus grandis HOM05D004268 ORTHO05D004958 4.0e-06 55.1 27 85.2
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 4.0e-06 55.1 39 69.2
Atru.chr11.2609 Acer truncatum HOM05D004268 ORTHO05D004958 5.2e-06 54.7 118 36.4
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 5.2e-06 54.7 32 78.1
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 5.2e-06 54.7 109 40.4
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 6.7e-06 54.3 109 42.2
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 6.7e-06 54.3 109 42.2
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 6.7e-06 54.3 70 44.3
Ah.10g038780 Amaranthus hybridus HOM05D000040 ORTHO05D000267 8.8e-06 53.9 103 39.8


User provided reference genes

Program Settings