Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G198 Amborella trichopoda HOM05D004710 ORTHO05D005445 1.1e-268 929.5 503 100.0
TAR624G0695 Trochodendron aralioides HOM05D004710 ORTHO05D005445 6.9e-186 654.4 501 73.1
TAR625G1186 Trochodendron aralioides HOM05D004710 ORTHO05D005445 4.5e-185 651.7 501 73.1
Nn7g38035 Nelumbo nucifera HOM05D004710 ORTHO05D005445 4.2e-183 645.2 487 71.7
GSVIVG01020835001 Vitis vinifera HOM05D004710 ORTHO05D005445 1.3e-181 640.2 504 70.4
Aqoxy4G00042 Aquilegia oxysepala HOM05D004710 ORTHO05D005445 6.7e-181 637.9 499 68.9
Cc05_g01390 Coffea canephora HOM05D004710 ORTHO05D005445 2.5e-180 636.0 503 68.4
QL93p2016_0028 Quercus lobata HOM05D004710 ORTHO05D005445 6.2e-179 631.3 506 68.2
QL08p045042 Quercus lobata HOM05D004710 ORTHO05D005445 8.1e-179 630.9 492 68.9
PGR042G2540 Punica granatum HOM05D004710 ORTHO05D005445 3.4e-177 625.5 492 69.7
CANSAT64G1857 Cannabis sativa HOM05D004710 ORTHO05D005445 4.9e-176 621.7 504 68.3
CiPaw.04G137800 Carya illinoinensis HOM05D004710 ORTHO05D005445 1.1e-175 620.5 495 68.3
Ciclev10031314m.g Citrus clementina HOM05D004710 ORTHO05D005445 1.4e-175 620.2 502 68.3
Eucgr.A02027 Eucalyptus grandis HOM05D004710 ORTHO05D005445 2.4e-175 619.4 491 69.5
Prupe.3G177900 Prunus persica HOM05D004710 ORTHO05D005445 2.1e-174 616.3 503 67.0
Potri.002G057300 Populus trichocarpa HOM05D004710 ORTHO05D005445 2.7e-174 615.9 504 66.9
Cfa023545 Carpinus fangiana HOM05D004710 ORTHO05D005445 4.6e-174 615.1 503 66.4
CSS0019642 Camellia sinensis var. sinensis HOM05D004710 ORTHO05D005445 6.0e-174 614.8 503 68.0
Duzib211G0680 Durio zibethinus HOM05D004710 ORTHO05D005445 1.3e-173 613.6 493 68.2
FvH4_6g38730 Fragaria vesca HOM05D004710 ORTHO05D005445 2.3e-173 612.8 503 66.2
Gohir.A08G051500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 3.0e-173 612.5 504 67.1
Gohir.D08G061300 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.1e-172 610.5 504 66.9
Potri.005G205300 Populus trichocarpa HOM05D004710 ORTHO05D005445 1.1e-172 610.5 497 66.4
VMungo0647G1334 Vigna mungo HOM05D004710 ORTHO05D005445 1.1e-172 610.5 485 69.3
Cpa.g.sc50.115 Carica papaya HOM05D004710 ORTHO05D005445 5.6e-172 608.2 499 68.7
Thecc.01G168300 Theobroma cacao HOM05D004710 ORTHO05D005445 5.6e-172 608.2 505 66.7
COL.COLO4_38396 Corchorus olitorius HOM05D004710 ORTHO05D005445 7.4e-172 607.8 503 66.8
Glyma.02G284400 Glycine max HOM05D004710 ORTHO05D005445 2.1e-171 606.3 494 67.8
Gorai.004G063400 Gossypium raimondii HOM05D004710 ORTHO05D005445 6.2e-171 604.7 504 66.5
Phvul.008G194500 Phaseolus vulgaris HOM05D004710 ORTHO05D005445 6.2e-171 604.7 494 67.4
TWI59G0681 Tripterygium wilfordii HOM05D004710 ORTHO05D005445 6.2e-171 604.7 499 67.1
Atru.chr6.2043 Acer truncatum HOM05D004710 ORTHO05D005445 8.2e-171 604.4 493 66.5
Glyma.14G030600 Glycine max HOM05D004710 ORTHO05D005445 1.1e-170 604.0 494 67.4
Rhsim12G0010700 Rhododendron simsii HOM05D004710 ORTHO05D005445 1.1e-170 604.0 504 66.7
CsaV3_4G007580 Cucumis sativus L. HOM05D004710 ORTHO05D005445 1.4e-170 603.6 503 66.6
Duzib133G0803 Durio zibethinus HOM05D004710 ORTHO05D005445 2.4e-170 602.8 492 66.9
ClCG07G010740 Citrullus lanatus HOM05D004710 ORTHO05D005445 3.1e-170 602.4 503 66.6
MSTRG.14902 Avicennia marina HOM05D004710 ORTHO05D005445 5.3e-170 601.7 501 65.5
Gorai.001G211100 Gossypium raimondii HOM05D004710 ORTHO05D005445 9.0e-170 600.9 504 67.5
MD17G1134500 Malus domestica HOM05D004710 ORTHO05D005445 1.5e-169 600.1 493 65.5
arahy.Tifrunner.gnm1.ann1.3YJ1U6 Arachis hypogaea HOM05D004710 ORTHO05D005445 2.0e-169 599.7 504 65.9
MELO3C016183.2 Cucumis melo HOM05D004710 ORTHO05D005445 2.6e-169 599.4 503 66.6
FAN05G2509 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.6e-169 599.4 523 63.7
Sc15g0002190 Simmondsia chinensis HOM05D004710 ORTHO05D005445 1.0e-168 597.4 492 66.7
Gohir.A07G182700 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.3e-168 597.0 504 66.9
Lalb_Chr10g0106551 Lupinus albus HOM05D004710 ORTHO05D005445 1.3e-168 597.0 499 66.7
vmacro08738 Vaccinium macrocarpon HOM05D004710 ORTHO05D005445 3.8e-168 595.5 504 66.5
arahy.Tifrunner.gnm1.ann1.BVM079 Arachis hypogaea HOM05D004710 ORTHO05D005445 4.9e-168 595.1 504 65.5
SGA_v2.0_scaffold73G24477 Striga asiatica HOM05D004710 ORTHO05D005445 6.5e-168 594.7 502 65.5
FAN02G0505 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.3e-167 590.9 533 61.9
Hma1.2p1_0073F.1_g038510 Hydrangea macrophylla HOM05D004710 ORTHO05D005445 9.3e-167 590.9 502 65.9
Os03g0666200 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 1.6e-166 590.1 486 65.4
Medtr5g091000 Medicago truncatula HOM05D004710 ORTHO05D005445 4.6e-166 588.6 496 65.9
HPP92_018652 Vanilla planifolia HOM05D004710 ORTHO05D005445 4.6e-166 588.6 503 65.2
Zm00001eb065510 Zea mays HOM05D004710 ORTHO05D005445 2.3e-165 586.3 505 62.4
MD09G1148200 Malus domestica HOM05D004710 ORTHO05D005445 3.0e-165 585.9 465 67.7
THA.LOC104800818 Tarenaya hassleriana HOM05D004710 ORTHO05D005445 3.0e-165 585.9 489 66.1
FAN14G4495 Fragaria x ananassa HOM05D004710 ORTHO05D005445 5.1e-165 585.1 512 63.7
Gohir.D07G189500 Gossypium hirsutum HOM05D004710 ORTHO05D005445 5.7e-164 581.6 471 69.9
Sed0010176 Sechium edule HOM05D004710 ORTHO05D005445 7.4e-164 581.3 504 64.9
Psat2g017280 Pisum sativum HOM05D004710 ORTHO05D005445 1.6e-163 580.1 490 65.1
Ca_06262_v3 Cicer arietinum L. HOM05D004710 ORTHO05D005445 2.8e-163 579.3 495 65.7
TPR.G10151 Trifolium pratense HOM05D004710 ORTHO05D005445 8.2e-163 577.8 496 64.7
PSO675G4395 Papaver somniferum HOM05D004710 ORTHO05D005445 1.8e-162 576.6 502 65.7
Sed0002024 Sechium edule HOM05D004710 ORTHO05D005445 4.1e-162 575.5 499 64.9
Sopen05g017300 Solanum pennellii HOM05D004710 ORTHO05D005445 4.1e-162 575.5 504 65.5
PSO675G5558 Papaver somniferum HOM05D004710 ORTHO05D005445 6.9e-162 574.7 503 65.4
Thhalv10016548m.g Eutrema salsugineum HOM05D004710 ORTHO05D005445 2.0e-161 573.2 489 64.8
Lalb_Chr04g0248931 Lupinus albus HOM05D004710 ORTHO05D005445 3.4e-161 572.4 487 65.5
RcHm_v2.0_Chr2g0152261 Rosa chinensis HOM05D004710 ORTHO05D005445 5.0e-160 568.5 503 62.4
Lj6g0000252 Lotus japonicus HOM05D004710 ORTHO05D005445 6.5e-160 568.2 487 64.9
Sabra05G0156000 Salix brachista HOM05D004710 ORTHO05D005445 6.5e-160 568.2 525 62.3
A04p23580 Brassica napus HOM05D004710 ORTHO05D005445 8.5e-160 567.8 503 63.2
CARHR124360 Cardamine hirsuta HOM05D004710 ORTHO05D005445 8.5e-160 567.8 504 62.9
Eucgr.K01227 Eucalyptus grandis HOM05D004710 ORTHO05D005445 8.5e-160 567.8 502 64.1
Sabra02G0046700 Salix brachista HOM05D004710 ORTHO05D005445 1.1e-159 567.4 492 64.2
Aa31LG5G6040 Aethionema arabicum HOM05D004710 ORTHO05D005445 1.4e-159 567.0 510 63.1
ECA246G2799 Erigeron canadensis HOM05D004710 ORTHO05D005445 2.5e-159 566.2 511 62.8
Migut.M00073 Erythranthe guttata HOM05D004710 ORTHO05D005445 3.2e-159 565.8 504 63.3
Lj6g0021308 Lotus japonicus HOM05D004710 ORTHO05D005445 7.2e-159 564.7 475 65.5
Carub.0004s1208 Capsella rubella HOM05D004710 ORTHO05D005445 9.3e-159 564.3 504 62.7
EL10Ac9g22830 Beta vulgaris HOM05D004710 ORTHO05D005445 1.2e-158 563.9 504 61.7
Sp4g13350 Schrenkiella parvula HOM05D004710 ORTHO05D005445 2.1e-158 563.1 490 64.5
AT2G30880 Arabidopsis thaliana HOM05D004710 ORTHO05D005445 3.6e-158 562.4 490 64.3
LjContig00049g0017244 Lotus japonicus HOM05D004710 ORTHO05D005445 3.6e-158 562.4 499 63.9
HanXRQChr17g0541191 Helianthus annuus HOM05D004710 ORTHO05D005445 1.3e-157 560.5 488 64.3
AL4G25830 Arabidopsis lyrata HOM05D004710 ORTHO05D005445 1.8e-157 560.1 489 64.0
HanXRQChr06g0171641 Helianthus annuus HOM05D004710 ORTHO05D005445 1.5e-156 557.0 506 62.5
Actinidia06121 Actinidia chinensis HOM05D004710 ORTHO05D005445 5.7e-156 555.1 425 72.5
Actinidia11220 Actinidia chinensis HOM05D004710 ORTHO05D005445 5.7e-156 555.1 504 61.5
Hund08425 Selenicereus undatus HOM05D004710 ORTHO05D005445 1.6e-155 553.5 496 62.7
BcaB06g28390 Brassica carinata HOM05D004710 ORTHO05D005445 2.2e-155 553.1 507 62.1
BraA04t17884Z Brassica rapa HOM05D004710 ORTHO05D005445 6.3e-155 551.6 503 62.0
Peaxi162Scf00416g00116 Petunia axillaris HOM05D004710 ORTHO05D005445 6.3e-155 551.6 504 64.3
BcaB06g28457 Brassica carinata HOM05D004710 ORTHO05D005445 4.1e-154 548.9 501 61.9
BolC4t27504H Brassica oleracea HOM05D004710 ORTHO05D005445 6.9e-154 548.1 501 61.9
C04p60020 Brassica napus HOM05D004710 ORTHO05D005445 5.9e-153 545.0 490 62.2
Lsat_1_v5_gn_3_35160 Lactuca sativa HOM05D004710 ORTHO05D005445 2.1e-150 536.6 507 61.3
DCAR_013324 Daucus carota HOM05D004710 ORTHO05D005445 1.4e-149 533.9 484 62.6
Manes.01G130800 Manihot esculenta HOM05D004710 ORTHO05D005445 1.7e-147 526.9 441 65.3
FAN09G1050 Fragaria x ananassa HOM05D004710 ORTHO05D005445 6.9e-146 521.5 525 58.1
Zm00001eb117740 Zea mays HOM05D004710 ORTHO05D005445 7.2e-143 511.5 483 57.6
Nitab4.5_0003177g0030 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.8e-141 506.9 382 73.6
Gohir.1Z049561 Gossypium hirsutum HOM05D004710 ORTHO05D005445 1.3e-136 490.7 356 75.6
Solyc05g021100.2 Solanum lycopersicum HOM05D004710 ORTHO05D005445 4.2e-135 485.7 442 63.3
AUR62015127 Chenopodium quinoa HOM05D004710 ORTHO05D005445 1.0e-133 481.1 491 57.2
Lj1C589T0 Lonicera japonica HOM05D004710 ORTHO05D005445 8.8e-133 478.0 527 56.4
SEGI_28206 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 7.0e-130 468.4 450 60.0
Ah.01g013580 Amaranthus hybridus HOM05D004710 ORTHO05D005445 1.2e-126 457.6 482 55.0
PGR142G3117 Punica granatum HOM05D004710 ORTHO05D005445 1.6e-126 457.2 502 54.2
MBI18_g07571_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 1.7e-123 447.2 461 59.0
Zm00001eb217790 Zea mays HOM05D004710 ORTHO05D005445 5.0e-120 435.6 391 60.6
SGA_v2.0_scaffold181G39713 Striga asiatica HOM05D004710 ORTHO05D005445 1.0e-117 427.9 491 54.6
BcaB01g04076 Brassica carinata HOM05D004710 ORTHO05D005445 1.4e-117 427.6 487 53.2
Nitab4.5_0000019g0200 Nicotiana tabacum HOM05D004710 ORTHO05D005445 1.4e-109 401.0 395 62.5
BcaC01g06018 Brassica carinata HOM05D004710 ORTHO05D005445 1.2e-97 361.3 491 48.7
CAN.G237.1 Capsicum annuum HOM05D004710 ORTHO05D005445 1.2e-97 361.3 375 58.1
Dinv09874 Davidia involucrata HOM05D004710 ORTHO05D005445 4.1e-90 336.3 208 81.2
C03p20350 Brassica napus HOM05D004710 ORTHO05D005445 2.7e-89 333.6 382 53.7
BolC3t14413H Brassica oleracea HOM05D004710 ORTHO05D005445 2.7e-89 333.6 382 53.7
Mapoly0039s0099 Marchantia polymorpha HOM05D004710 ORTHO05D005445 6.0e-89 332.4 371 53.6
SMO169G0289 Selaginella moellendorffii HOM05D004710 ORTHO05D005445 2.5e-87 327.0 324 54.9
Pp3c23_16670 Physcomitrium patens HOM05D004710 ORTHO05D005445 3.9e-80 303.1 402 49.3
Oeu040170.3 Olea europaea HOM05D004710 ORTHO05D005445 8.1e-78 295.4 422 45.3
FAN06G4649 Fragaria x ananassa HOM05D004710 ORTHO05D005445 9.0e-77 292.0 221 71.0
Haze_13560 Corylus avellana HOM05D004710 ORTHO05D005445 2.9e-75 287.0 253 67.2
AagrBONN_evm.TU.Sc2ySwM_228.2862 Anthoceros agrestis HOM05D004710 ORTHO05D005445 3.2e-74 283.5 410 42.4
Aa31LG1G7230 Aethionema arabicum HOM05D004710 ORTHO05D005445 9.0e-69 265.4 221 66.1
MBI18_g48251_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 9.3e-58 228.8 275 53.5
Pp3c13_22640 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.3e-56 224.2 357 41.5
AUR62017588 Chenopodium quinoa HOM05D004710 ORTHO05D005445 2.0e-52 211.1 208 61.1
CBR_g48423 Chara braunii HOM05D004710 ORTHO05D005445 8.4e-51 205.7 395 37.5
FAN18G0865 Fragaria x ananassa HOM05D004710 ORTHO05D005445 2.6e-44 184.1 192 56.8
Pp3c26_520 Physcomitrium patens HOM05D004710 ORTHO05D005445 2.5e-42 177.6 418 32.5
FAN08G2380 Fragaria x ananassa HOM05D004710 ORTHO05D005445 1.7e-35 154.8 98 77.6
Os07g0138100 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 3.8e-35 153.7 108 67.6
Haze_13559 Corylus avellana HOM05D004710 ORTHO05D005445 4.2e-34 150.2 94 78.7
Dinv09873 Davidia involucrata HOM05D004710 ORTHO05D005445 8.8e-32 142.5 132 55.3
HPP92_018658 Vanilla planifolia HOM05D004710 ORTHO05D005445 6.3e-30 136.3 89 79.8
A03p17240 Brassica napus HOM05D004710 ORTHO05D005445 9.1e-29 132.5 290 37.6
SHI10530 Sapria himalayana HOM05D000906 ORTHO05D000713 9.1e-21 105.9 185 40.0
BraA03t10998Z Brassica rapa HOM05D004710 ORTHO05D005445 1.3e-19 102.1 122 50.0
Aa31LG1G7240 Aethionema arabicum HOM05D004710 ORTHO05D005445 5.5e-18 96.7 155 40.6
AUR62017587 Chenopodium quinoa HOM05D004710 ORTHO05D005445 6.3e-14 83.2 96 43.8
Lj6g0000199 Lotus japonicus HOM05D004710 ORTHO05D005445 2.5e-10 71.2 63 47.6
Zm00001eb299690 Zea mays HOM05D004710 ORTHO05D005445 6.1e-09 66.6 74 56.8
BraA03t10997Z Brassica rapa HOM05D004710 ORTHO05D005445 1.8e-08 65.1 71 52.1
Os05g0128700 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 5.2e-08 63.5 61 55.7
Os12g0505950 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 5.2e-08 63.5 61 55.7
SEGI_40770 Sequoiadendron giganteum HOM05D004710 ORTHO05D005445 2.6e-07 61.2 50 66.0
Lj1A589T9 Lonicera japonica HOM05D004710 ORTHO05D005445 1.7e-06 58.5 50 66.0
Os05g0153901 Oryza sativa ssp. japonica HOM05D004710 ORTHO05D005445 2.2e-06 58.2 61 52.5
MBI18_g29058_MAGBIO Magnolia biondii HOM05D004710 ORTHO05D005445 6.3e-06 56.6 198 30.3


User provided reference genes

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