Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 5.8e-250 867.1 430 100.0
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 1.7e-156 556.6 430 65.1
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 3.1e-155 552.4 428 63.6
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 7.0e-155 551.2 379 69.7
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 7.0e-155 551.2 432 65.0
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 9.1e-155 550.8 431 63.8
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 1.6e-154 550.1 431 64.3
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 4.5e-154 548.5 431 64.0
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 1.0e-153 547.4 431 64.3
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.3e-153 546.2 378 69.0
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 3.8e-153 545.4 431 63.3
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 1.1e-152 543.9 427 63.0
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 1.5e-152 543.5 401 67.8
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 1.5e-152 543.5 379 68.9
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 3.3e-152 542.3 381 68.0
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 1.2e-151 540.4 431 64.3
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 1.2e-151 540.4 431 64.0
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 2.1e-151 539.7 431 63.8
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.6e-151 538.9 433 63.5
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 6.1e-151 538.1 430 60.9
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 1.0e-150 537.3 431 63.3
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 1.8e-150 536.6 452 61.7
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 6.8e-150 534.6 381 66.9
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 8.9e-150 534.3 388 66.5
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 1.2e-149 533.9 381 67.5
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.5e-149 533.5 433 63.7
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 2.6e-149 532.7 439 61.5
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 4.4e-149 531.9 401 66.1
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 9.8e-149 530.8 423 63.6
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 9.8e-149 530.8 388 66.2
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 9.8e-149 530.8 423 63.6
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 1.7e-148 530.0 425 60.5
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.7e-148 528.9 423 62.9
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 3.7e-148 528.9 432 61.3
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 4.9e-148 528.5 432 61.8
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 4.9e-148 528.5 434 61.1
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 8.3e-148 527.7 378 66.4
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 8.3e-148 527.7 378 66.9
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 1.1e-147 527.3 378 66.9
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 1.1e-147 527.3 374 67.9
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 1.1e-147 527.3 429 60.4
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 1.8e-147 526.6 432 61.8
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 1.8e-147 526.6 380 66.3
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.4e-147 526.2 386 66.3
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 4.1e-147 525.4 431 61.9
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 7.0e-147 524.6 382 66.2
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 7.0e-147 524.6 435 60.7
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 7.0e-147 524.6 434 61.5
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 9.2e-147 524.2 429 61.5
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 1.2e-146 523.9 391 66.5
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 2.0e-146 523.1 378 66.4
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 5.9e-146 521.5 432 60.9
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 2.3e-145 519.6 430 59.5
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 5.0e-145 518.5 433 61.9
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 6.6e-145 518.1 438 61.0
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 6.6e-145 518.1 438 61.0
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 6.6e-145 518.1 430 59.3
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 8.6e-145 517.7 415 64.1
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 1.1e-144 517.3 430 60.0
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 1.1e-144 517.3 428 60.5
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.5e-144 516.9 381 66.7
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 2.5e-144 516.2 428 60.7
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 3.3e-144 515.8 428 60.0
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 3.3e-144 515.8 425 59.5
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 5.6e-144 515.0 433 59.4
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 5.6e-144 515.0 434 59.2
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 7.3e-144 514.6 382 65.4
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 7.3e-144 514.6 377 65.5
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 1.6e-143 513.5 428 60.5
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 2.8e-143 512.7 429 61.1
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 2.8e-143 512.7 375 65.3
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 3.6e-143 512.3 380 63.9
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 4.7e-143 511.9 432 60.0
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 4.7e-143 511.9 431 59.9
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 6.1e-143 511.5 381 66.7
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 6.1e-143 511.5 422 63.5
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.0e-142 510.8 431 58.9
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 2.3e-142 509.6 381 66.7
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 3.1e-142 509.2 388 62.9
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 2.0e-141 506.5 435 60.0
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 2.0e-141 506.5 379 66.0
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.7e-140 503.4 445 57.8
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 2.2e-140 503.1 436 59.6
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 2.9e-140 502.7 428 58.6
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 8.3e-140 501.1 441 60.3
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 8.3e-140 501.1 433 61.0
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 1.1e-139 500.7 443 59.1
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 1.9e-139 500.0 441 60.3
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 2.4e-139 499.6 412 61.7
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 2.0e-138 496.5 379 65.7
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 2.0e-138 496.5 428 57.7
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 7.8e-138 494.6 442 60.2
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.7e-137 493.4 371 63.9
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 3.9e-137 492.3 449 59.0
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 3.9e-137 492.3 387 61.5
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 4.3e-136 488.8 435 59.8
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 5.6e-136 488.4 448 58.5
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 5.6e-136 488.4 388 61.3
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 5.6e-136 488.4 386 64.2
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 7.3e-136 488.0 441 59.2
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 9.5e-136 487.6 421 58.0
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 1.2e-135 487.3 382 63.9
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 4.7e-135 485.3 435 58.6
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 6.2e-135 485.0 435 59.8
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 6.2e-135 485.0 435 59.8
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 6.2e-135 485.0 435 59.3
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 1.4e-134 483.8 438 58.7
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 3.1e-134 482.6 432 57.9
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 4.0e-134 482.3 435 57.9
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 1.3e-132 477.2 361 63.7
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 2.9e-132 476.1 379 59.9
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 6.4e-132 474.9 350 65.1
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 1.9e-131 473.4 349 65.9
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 3.2e-131 472.6 430 56.0
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 1.6e-130 470.3 319 69.3
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 7.8e-130 468.0 368 63.6
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.1e-127 459.9 350 64.0
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.8e-127 459.5 347 61.4
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 9.9e-125 451.1 340 64.4
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.7e-124 449.1 422 56.6
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 3.7e-124 449.1 422 56.6
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.2e-122 444.1 437 57.0
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 2.3e-121 439.9 437 56.5
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 4.7e-119 432.2 375 59.2
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 2.1e-114 416.8 432 53.5
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 3.8e-108 396.0 385 54.8
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 7.8e-106 388.3 352 59.1
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 7.1e-99 365.2 299 60.2
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 7.1e-99 365.2 299 60.2
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.6e-98 364.0 383 52.2
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 1.3e-97 360.9 385 48.8
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 5.6e-96 355.5 429 46.4
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 1.0e-68 265.0 232 57.3
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.1e-67 261.5 327 46.8
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 3.7e-63 246.5 190 63.7
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 4.4e-56 223.0 212 55.2
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 7.0e-54 215.7 170 58.8
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 2.0e-53 214.2 140 70.7
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 1.3e-47 194.9 281 41.3
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 2.5e-35 154.1 220 40.9
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 4.2e-35 153.3 106 63.2
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 1.4e-30 138.3 138 55.8
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 5.0e-28 129.8 109 64.2
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 3.3e-27 127.1 110 61.8
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 4.0e-25 120.2 94 59.6
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 8.1e-10 69.3 51 60.8
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 2.6e-08 64.3 54 55.6


User provided reference genes

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