Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G123 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.1e-65 253.1 124 100.0
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.1e-47 193.4 102 93.1
ATR0749G088 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.1e-44 183.3 109 85.3
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 5.5e-36 154.5 97 77.3
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 2.3e-34 149.1 93 76.3
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 6.7e-34 147.5 92 78.3
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 2.0e-33 146.0 108 68.5
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 3.3e-33 145.2 101 72.3
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 3.3e-33 145.2 97 72.2
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 4.4e-33 144.8 101 69.3
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 4.4e-33 144.8 102 74.5
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 7.4e-33 144.1 93 74.2
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 7.4e-33 144.1 107 70.1
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 7.4e-33 144.1 92 75.0
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 7.4e-33 144.1 102 70.6
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 9.7e-33 143.7 108 68.5
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 9.7e-33 143.7 102 73.5
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.3e-32 143.3 93 74.2
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 1.3e-32 143.3 94 73.4
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 1.7e-32 142.9 91 76.9
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 1.7e-32 142.9 92 72.8
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 1.7e-32 142.9 93 74.2
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 1.7e-32 142.9 94 73.4
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 2.2e-32 142.5 92 76.1
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 2.2e-32 142.5 98 70.4
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 2.2e-32 142.5 99 68.7
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 2.2e-32 142.5 97 73.2
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 2.8e-32 142.1 107 69.2
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 2.8e-32 142.1 107 69.2
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 3.7e-32 141.7 106 67.9
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 3.7e-32 141.7 107 66.4
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 3.7e-32 141.7 101 68.3
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 4.8e-32 141.4 102 70.6
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 4.8e-32 141.4 103 66.0
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 4.8e-32 141.4 102 67.6
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 4.8e-32 141.4 94 72.3
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 6.3e-32 141.0 92 73.9
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 6.3e-32 141.0 89 76.4
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 8.2e-32 140.6 97 71.1
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 8.2e-32 140.6 100 70.0
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 8.2e-32 140.6 102 66.7
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 8.2e-32 140.6 97 69.1
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 8.2e-32 140.6 107 66.4
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 8.2e-32 140.6 107 66.4
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 8.2e-32 140.6 92 71.7
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 8.2e-32 140.6 101 68.3
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 1.1e-31 140.2 92 72.8
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 1.1e-31 140.2 94 72.3
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 1.1e-31 140.2 91 75.8
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 1.1e-31 140.2 92 75.0
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 1.4e-31 139.8 92 73.9
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 1.4e-31 139.8 92 73.9
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 1.4e-31 139.8 105 69.5
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 1.4e-31 139.8 92 75.0
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 1.4e-31 139.8 91 73.6
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.8e-31 139.4 91 74.7
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 1.8e-31 139.4 107 65.4
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.8e-31 139.4 107 65.4
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 1.8e-31 139.4 89 77.5
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 1.8e-31 139.4 92 73.9
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 1.8e-31 139.4 101 67.3
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 1.8e-31 139.4 101 67.3
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 1.8e-31 139.4 102 67.6
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 2.4e-31 139.0 92 75.0
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 2.4e-31 139.0 92 75.0
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 2.4e-31 139.0 94 73.4
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 3.1e-31 138.7 92 72.8
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 3.1e-31 138.7 92 72.8
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 3.1e-31 138.7 92 72.8
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 3.1e-31 138.7 94 72.3
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 3.1e-31 138.7 94 72.3
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 3.1e-31 138.7 104 68.3
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 4.1e-31 138.3 92 71.7
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 4.1e-31 138.3 92 72.8
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 4.1e-31 138.3 98 70.4
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 5.3e-31 137.9 102 65.7
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 5.3e-31 137.9 92 72.8
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 5.3e-31 137.9 101 69.3
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 5.3e-31 137.9 92 71.7
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 5.3e-31 137.9 104 68.3
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 5.3e-31 137.9 92 71.7
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 7.0e-31 137.5 92 71.7
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 7.0e-31 137.5 92 71.7
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 7.0e-31 137.5 101 68.3
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 7.0e-31 137.5 92 73.9
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 7.0e-31 137.5 90 74.4
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 7.0e-31 137.5 97 69.1
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 9.1e-31 137.1 92 70.7
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 9.1e-31 137.1 92 70.7
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 9.1e-31 137.1 92 72.8
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 9.1e-31 137.1 92 71.7
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 9.1e-31 137.1 89 75.3
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 9.1e-31 137.1 93 73.1
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.2e-30 136.7 100 68.0
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 1.2e-30 136.7 92 73.9
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 1.2e-30 136.7 91 73.6
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 1.6e-30 136.3 92 72.8
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 1.6e-30 136.3 89 75.3
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 1.6e-30 136.3 89 71.9
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 2.0e-30 136.0 92 71.7
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 2.0e-30 136.0 91 73.6
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 2.0e-30 136.0 92 71.7
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 2.0e-30 136.0 116 60.3
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 2.0e-30 136.0 89 75.3
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 2.0e-30 136.0 92 69.6
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 2.6e-30 135.6 92 70.7
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 3.5e-30 135.2 89 74.2
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 5.9e-30 134.4 113 62.8
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 5.9e-30 134.4 92 72.8
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 5.9e-30 134.4 92 72.8
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 5.9e-30 134.4 112 63.4
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 7.7e-30 134.0 91 71.4
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 1.0e-29 133.7 93 71.0
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 1.0e-29 133.7 93 71.0
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 1.0e-29 133.7 96 67.7
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 1.0e-29 133.7 92 70.7
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 1.0e-29 133.7 89 71.9
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 1.3e-29 133.3 91 72.5
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 1.7e-29 132.9 91 72.5
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 2.9e-29 132.1 92 70.7
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 3.8e-29 131.7 92 70.7
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 3.8e-29 131.7 93 67.7
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 5.0e-29 131.3 91 71.4
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 5.0e-29 131.3 93 71.0
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 2.5e-28 129.0 92 68.5
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 5.5e-28 127.9 91 64.8
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 9.4e-28 127.1 92 65.2
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 3.0e-26 122.1 84 67.9
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 8.8e-26 120.6 111 56.8
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 1.1e-25 120.2 97 60.8
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 4.8e-24 114.8 93 61.3
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 8.2e-24 114.0 90 63.3
RcHm_v2.0_Chr2g0097541 Rosa chinensis HOM05D003687 ORTHO05D004571 2.7e-22 109.0 88 65.9
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 3.5e-22 108.6 83 62.7
ATR0199G031 Amborella trichopoda HOM05D003687 ORTHO05D004571 6.5e-21 104.4 66 78.8
A06p33750 Brassica napus HOM05D003687 ORTHO05D004571 1.6e-19 99.8 98 56.1
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 6.1e-19 97.8 76 65.8
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 1.8e-18 96.3 82 54.9
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 8.8e-18 94.0 59 76.3
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 1.5e-17 93.2 59 74.6
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 1.5e-17 93.2 57 77.2
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 2.0e-17 92.8 59 74.6
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 5.7e-17 91.3 56 75.0
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 5.7e-17 91.3 56 75.0
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 4.8e-16 88.2 104 46.2
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 1.4e-15 86.7 59 71.2
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.8e-15 86.3 57 71.9
SalBow6G6332 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.7e-13 79.7 55 72.7
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 5.0e-13 78.2 60 65.0
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 3.6e-11 72.0 60 61.7
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 1.7e-08 63.2 87 36.8
Solyc04g150135.1 Solanum lycopersicum HOM05D001565 ORTHO05D001725 5.4e-07 58.2 53 56.6
Sopen04g021110 Solanum pennellii HOM05D001565 ORTHO05D018129 5.4e-07 58.2 40 72.5
Solyc04g050430.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 7.0e-07 57.8 41 70.7


User provided reference genes

Program Settings