Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 0.0e+00 1082.0 574 100.0
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 4.5e-165 585.5 672 54.3
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 5.5e-163 578.6 661 52.5
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 7.4e-160 568.2 663 53.2
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 3.7e-159 565.8 660 52.1
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 3.7e-159 565.8 618 55.5
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 6.3e-159 565.1 658 53.3
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 6.3e-159 565.1 658 53.2
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 8.2e-159 564.7 661 53.3
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 8.2e-159 564.7 661 53.3
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 8.2e-159 564.7 635 54.2
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.1e-158 564.3 657 52.8
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.4e-158 563.9 651 53.1
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 4.1e-158 562.4 668 52.5
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 2.6e-157 559.7 660 53.9
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 2.6e-157 559.7 644 55.3
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 2.2e-156 556.6 657 52.8
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 2.2e-156 556.6 623 53.5
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 2.2e-156 556.6 642 53.3
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 2.9e-156 556.2 657 51.9
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 5.0e-156 555.4 653 53.0
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 8.5e-156 554.7 620 55.2
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.4e-155 553.9 665 52.9
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 1.9e-155 553.5 680 52.1
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 2.5e-155 553.1 544 59.7
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 5.5e-155 552.0 678 49.1
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 7.2e-155 551.6 656 52.6
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 9.3e-155 551.2 627 54.7
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.6e-154 550.4 598 54.5
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 2.1e-154 550.1 676 51.9
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 2.1e-154 550.1 627 55.0
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 6.1e-154 548.5 660 52.1
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 1.0e-153 547.7 669 52.0
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 1.3e-153 547.4 660 52.4
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 2.3e-153 546.6 650 52.9
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 3.9e-153 545.8 659 52.0
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 6.7e-153 545.0 669 51.4
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 6.7e-153 545.0 661 52.5
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 3.3e-152 542.7 666 53.8
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 7.4e-152 541.6 629 54.4
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 1.3e-151 540.8 652 52.9
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 2.2e-151 540.0 721 49.9
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 2.8e-151 539.7 660 52.0
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 3.7e-151 539.3 658 52.3
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 6.3e-151 538.5 664 51.2
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 8.2e-151 538.1 501 62.3
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 1.1e-150 537.7 660 51.5
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 3.1e-150 536.2 629 54.1
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 9.1e-150 534.6 612 55.6
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 5.9e-149 531.9 490 61.6
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 5.9e-149 531.9 656 52.6
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 1.0e-148 531.2 586 52.9
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 1.1e-147 527.7 617 54.6
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.4e-147 527.3 662 50.8
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.4e-147 527.3 664 51.1
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.4e-147 527.3 660 51.8
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 1.4e-147 527.3 597 54.1
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 1.9e-147 526.9 669 52.2
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 3.2e-147 526.2 646 52.6
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 5.5e-147 525.4 500 60.2
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 7.2e-147 525.0 613 53.2
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 2.7e-146 523.1 662 50.9
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 3.6e-146 522.7 662 50.0
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 4.6e-146 522.3 614 54.1
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 4.6e-146 522.3 614 54.1
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 7.9e-146 521.5 637 51.6
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 7.9e-146 521.5 591 54.3
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 1.0e-145 521.2 614 53.3
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 1.4e-145 520.8 613 54.3
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.4e-145 520.8 664 50.5
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 1.8e-145 520.4 616 54.1
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 2.3e-145 520.0 678 50.7
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.3e-145 520.0 624 55.8
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 6.7e-145 518.5 612 53.8
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 6.7e-145 518.5 612 53.8
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 6.7e-145 518.5 660 50.5
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 6.7e-145 518.5 547 56.7
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 2.0e-144 516.9 612 53.6
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.6e-144 516.5 553 57.0
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 1.7e-143 513.8 610 53.8
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 1.4e-142 510.8 620 53.2
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 4.1e-142 509.2 616 53.6
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 4.1e-142 509.2 616 53.6
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.2e-141 507.7 640 51.4
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 3.8e-140 502.7 645 50.1
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 1.4e-139 500.7 612 52.5
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 2.1e-138 496.9 623 52.0
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.8e-137 493.8 460 62.0
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 5.2e-137 492.3 778 45.4
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.3e-135 487.6 582 53.4
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 6.3e-135 485.3 515 55.7
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 1.2e-130 471.1 586 50.3
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 1.2e-130 471.1 452 64.6
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 1.8e-129 467.2 721 44.1
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 2.2e-127 460.3 668 44.8
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 1.8e-126 457.2 547 50.8
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 4.5e-125 452.6 458 60.9
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 2.7e-122 443.4 415 58.1
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 1.5e-120 437.6 612 48.7
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 2.8e-119 433.3 680 45.3
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 8.3e-119 431.8 668 42.5
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.1e-118 429.5 553 47.0
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 1.6e-117 427.6 400 64.5
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 4.2e-115 419.5 550 50.4
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 1.4e-113 414.5 635 45.5
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 3.1e-110 403.3 545 46.8
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 7.8e-109 398.7 661 43.7
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 9.5e-107 391.7 650 41.7
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 8.0e-106 388.7 665 39.8
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.2e-103 380.6 549 45.2
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 1.4e-102 377.9 541 47.3
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 5.8e-88 329.3 703 37.1
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 2.4e-86 323.9 442 50.5
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.5e-83 314.7 381 48.8
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 4.7e-82 309.7 622 38.3
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 3.1e-81 307.0 468 44.4
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 5.6e-75 286.2 311 65.6
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 6.9e-65 252.7 180 80.6
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.3e-63 248.4 248 54.4
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 7.9e-61 239.2 307 53.4
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 3.3e-59 233.8 281 60.1
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 4.5e-56 223.4 165 83.6
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 6.0e-53 213.0 191 72.8
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.1e-46 192.2 298 48.3
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 7.9e-45 186.0 222 46.8
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 3.4e-40 170.6 103 87.4
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 2.3e-36 157.9 130 66.9
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.9e-36 157.1 282 33.7
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 1.0e-31 142.5 83 75.9
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 6.5e-31 139.8 134 56.0
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 9.4e-30 136.0 271 40.2
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 2.2e-26 124.8 198 37.9
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 6.3e-26 123.2 219 47.9
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 5.0e-23 113.6 89 71.9
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 5.2e-20 103.6 333 26.1
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 4.1e-17 94.0 59 67.8
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 5.3e-17 93.6 151 43.0
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 6.7e-12 76.6 77 48.1
arahy.Tifrunner.gnm1.ann1.5KT91U Arachis hypogaea HOM05D004640 ORTHO05D005489 1.2e-11 75.9 69 56.5
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 1.6e-08 65.5 54 55.6
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.1e-06 59.3 32 90.6
RcHm_v2.0_Chr7g0219231 Rosa chinensis HOM05D003652 ORTHO05D005489 1.9e-06 58.5 36 83.3
arahy.Tifrunner.gnm1.ann1.TB7XPK Arachis hypogaea HOM05D004640 ORTHO05D005489 4.2e-06 57.4 34 82.4


User provided reference genes

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