Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0763G063 Amborella trichopoda HOM05D004092 ORTHO05D005448 0.0e+00 1576.2 832 100.0
TAR362G1264 Trochodendron aralioides HOM05D004092 ORTHO05D005448 3.0e-263 912.1 837 60.9
Prupe.4G136600 Prunus persica HOM05D004092 ORTHO05D005448 1.3e-253 880.2 830 60.1
MBI18_g01899_MAGBIO Magnolia biondii HOM05D004092 ORTHO05D005448 1.7e-253 879.8 844 60.5
CiPaw.11G063100 Carya illinoinensis HOM05D004092 ORTHO05D005448 7.2e-249 864.4 842 58.8
MD10G1205100 Malus domestica HOM05D004092 ORTHO05D005448 7.2e-249 864.4 830 59.3
MD05G1223600 Malus domestica HOM05D004092 ORTHO05D005448 1.8e-247 859.8 831 58.5
Ciclev10004308m.g Citrus clementina HOM05D004092 ORTHO05D005448 1.2e-246 857.1 852 56.8
QL04p079824 Quercus lobata HOM05D004092 ORTHO05D005448 2.6e-246 855.9 844 57.9
TWI38G0748 Tripterygium wilfordii HOM05D004092 ORTHO05D005448 1.3e-245 853.6 836 58.1
QL04p080030 Quercus lobata HOM05D004092 ORTHO05D005448 2.2e-245 852.8 845 57.4
Hma1.2p1_0334F.1_g128570 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 9.1e-244 847.4 822 58.4
RcHm_v2.0_Chr5g0025821 Rosa chinensis HOM05D004092 ORTHO05D005448 1.6e-243 846.7 836 57.8
Sabra05G0079500 Salix brachista HOM05D004092 ORTHO05D005448 2.7e-243 845.9 836 57.8
Atru.chr1.122 Acer truncatum HOM05D004092 ORTHO05D005448 1.0e-242 844.0 849 57.0
Dinv19600 Davidia involucrata HOM05D004092 ORTHO05D005448 1.0e-242 844.0 843 58.1
FvH4_3g15370 Fragaria vesca HOM05D004092 ORTHO05D005448 2.3e-242 842.8 840 55.8
Actinidia35425 Actinidia chinensis HOM05D004092 ORTHO05D005448 2.9e-242 842.4 839 58.2
GSVIVG01036806001 Vitis vinifera HOM05D004092 ORTHO05D005448 3.8e-242 842.0 844 56.8
VMungo1127G2087 Vigna mungo HOM05D004092 ORTHO05D005448 8.6e-242 840.9 843 57.7
Duzib213G0752 Durio zibethinus HOM05D004092 ORTHO05D005448 1.1e-241 840.5 846 56.5
Cfa005512 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.9e-241 839.7 834 57.6
CDE01G0334 Ceratophyllum demersum HOM05D004092 ORTHO05D005448 9.5e-241 837.4 840 56.5
Thecc.07G169400 Theobroma cacao HOM05D004092 ORTHO05D005448 1.2e-240 837.0 845 56.1
CANSAT80G2562 Cannabis sativa HOM05D004092 ORTHO05D005448 1.6e-240 836.6 830 57.0
Manes.14G011200 Manihot esculenta HOM05D004092 ORTHO05D005448 1.0e-239 833.9 833 57.6
Phvul.011G076150 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.0e-239 833.9 851 56.1
Potri.005G096900 Populus trichocarpa HOM05D004092 ORTHO05D005448 3.0e-239 832.4 834 57.0
MELO3C012616.2 Cucumis melo HOM05D004092 ORTHO05D005448 4.0e-239 832.0 828 56.9
Glyma.12G070100 Glycine max HOM05D004092 ORTHO05D005448 4.0e-239 832.0 842 55.8
Phvul.L001854 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 1.2e-238 830.5 851 55.8
Gohir.A13G122400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 2.0e-238 829.7 839 55.2
ClCG09G022650 Citrullus lanatus HOM05D004092 ORTHO05D005448 5.7e-238 828.2 827 57.0
CsaV3_7G022820 Cucumis sativus L. HOM05D004092 ORTHO05D005448 4.9e-237 825.1 828 56.9
Oeu051991.1 Olea europaea HOM05D004092 ORTHO05D005448 4.9e-237 825.1 837 55.6
Ca_07696_v3 Cicer arietinum L. HOM05D004092 ORTHO05D005448 4.1e-236 822.0 838 57.8
Glyma.10G245700 Glycine max HOM05D004092 ORTHO05D005448 3.5e-235 818.9 840 54.6
arahy.Tifrunner.gnm1.ann1.R5WWIH Arachis hypogaea HOM05D004092 ORTHO05D005448 1.3e-234 817.0 841 54.7
Lj1g0019540 Lotus japonicus HOM05D004092 ORTHO05D005448 1.7e-234 816.6 842 55.1
CAN.G851.30 Capsicum annuum HOM05D004092 ORTHO05D005448 6.6e-234 814.7 841 53.9
Lalb_Chr03g0031641 Lupinus albus HOM05D004092 ORTHO05D005448 1.5e-233 813.5 856 54.1
Solyc04g074090.4 Solanum lycopersicum HOM05D004092 ORTHO05D005448 2.5e-233 812.8 836 55.4
Gorai.013G141600 Gossypium raimondii HOM05D004092 ORTHO05D005448 5.6e-233 811.6 825 54.8
arahy.Tifrunner.gnm1.ann1.7JS6EV Arachis hypogaea HOM05D004092 ORTHO05D005448 7.3e-233 811.2 850 54.6
Gohir.D13G126400 Gossypium hirsutum HOM05D004092 ORTHO05D005448 7.3e-233 811.2 835 54.5
Lalb_Chr01g0007101 Lupinus albus HOM05D004092 ORTHO05D005448 1.2e-232 810.4 848 53.5
MSTRG.7071 Avicennia marina HOM05D004092 ORTHO05D005448 6.1e-232 808.1 837 55.7
FAN11G0738 Fragaria x ananassa HOM05D004092 ORTHO05D005448 2.3e-231 806.2 841 54.5
Eucgr.E01785 Eucalyptus grandis HOM05D004092 ORTHO05D005448 3.1e-231 805.8 842 55.2
FAN16G3313 Fragaria x ananassa HOM05D004092 ORTHO05D005448 5.2e-231 805.1 840 54.4
DCAR_026669 Daucus carota HOM05D004092 ORTHO05D005448 2.6e-230 802.7 839 56.0
CSS0013287 Camellia sinensis var. sinensis HOM05D004092 ORTHO05D005448 2.9e-229 799.3 858 54.9
COL.COLO4_07946 Corchorus olitorius HOM05D004092 ORTHO05D005448 8.3e-229 797.7 849 54.4
THA.LOC104808127 Tarenaya hassleriana HOM05D004092 ORTHO05D005448 1.1e-228 797.3 834 54.0
SalBow8G5525 Salvia bowleyana HOM05D004092 ORTHO05D005448 4.1e-228 795.4 835 54.9
Sed0009567 Sechium edule HOM05D004092 ORTHO05D005448 4.1e-228 795.4 842 54.9
Aqoxy3G03661 Aquilegia oxysepala HOM05D004092 ORTHO05D005448 7.0e-228 794.7 835 56.8
TPR.G6646 Trifolium pratense HOM05D004092 ORTHO05D005448 3.5e-227 792.3 863 53.2
HPP92_004307 Vanilla planifolia HOM05D004092 ORTHO05D005448 3.5e-227 792.3 841 54.3
Psat3g124440 Pisum sativum HOM05D004092 ORTHO05D005448 6.0e-227 791.6 837 55.8
SEGI_30171 Sequoiadendron giganteum HOM05D004092 ORTHO05D005448 3.9e-226 788.9 855 52.5
FAN25G1415 Fragaria x ananassa HOM05D004092 ORTHO05D005448 1.9e-225 786.6 839 55.4
SalBow6G0067 Salvia bowleyana HOM05D004092 ORTHO05D005448 3.3e-225 785.8 846 53.9
Cc05_g16260 Coffea canephora HOM05D004092 ORTHO05D005448 1.2e-224 783.9 821 55.2
Peaxi162Scf00041g01738 Petunia axillaris HOM05D004092 ORTHO05D005448 6.2e-224 781.6 835 54.4
SalBow6G4089 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.1e-223 780.8 846 53.5
Migut.M01537 Erythranthe guttata HOM05D004092 ORTHO05D005448 2.3e-223 779.6 833 53.9
Lsat_1_v5_gn_7_110180 Lactuca sativa HOM05D004092 ORTHO05D005448 6.8e-223 778.1 846 54.3
Medtr7g070240 Medicago truncatula HOM05D004092 ORTHO05D005448 8.9e-223 777.7 837 55.7
PGR044G0523 Punica granatum HOM05D004092 ORTHO05D005448 5.4e-220 768.5 827 54.1
SGA_v2.0_scaffold186G40203 Striga asiatica HOM05D004092 ORTHO05D005448 7.1e-220 768.1 871 50.7
HanXRQChr11g0335681 Helianthus annuus HOM05D004092 ORTHO05D005448 2.7e-219 766.1 832 54.3
ECA236G4689 Erigeron canadensis HOM05D004092 ORTHO05D005448 1.7e-218 763.5 840 52.6
PSO063G0010 Papaver somniferum HOM05D004092 ORTHO05D005448 1.5e-217 760.4 858 51.9
PSO782G4649 Papaver somniferum HOM05D004092 ORTHO05D005448 3.3e-217 759.2 856 51.2
Nn5g27645 Nelumbo nucifera HOM05D004092 ORTHO05D005448 1.6e-216 756.9 830 54.0
Sc08g0008610 Simmondsia chinensis HOM05D004092 ORTHO05D005448 1.1e-215 754.2 787 54.6
AT1G79150 Arabidopsis thaliana HOM05D004092 ORTHO05D005448 7.1e-212 741.5 844 49.8
BolC6t40319H Brassica oleracea HOM05D004092 ORTHO05D005448 2.7e-211 739.6 819 51.6
AUR62026892 Chenopodium quinoa HOM05D004092 ORTHO05D005448 4.6e-211 738.8 826 52.3
CARHR072800 Cardamine hirsuta HOM05D004092 ORTHO05D005448 6.0e-211 738.4 841 50.3
Zm00001eb020130 Zea mays HOM05D004092 ORTHO05D005448 6.0e-211 738.4 851 51.4
BcaC08g47477 Brassica carinata HOM05D004092 ORTHO05D005448 1.0e-210 737.6 819 52.5
C06p53020 Brassica napus HOM05D004092 ORTHO05D005448 1.0e-210 737.6 819 52.5
A07p44270 Brassica napus HOM05D004092 ORTHO05D005448 1.5e-209 733.8 821 51.2
BraA07t31936Z Brassica rapa HOM05D004092 ORTHO05D005448 1.5e-209 733.8 821 51.2
Carub.0002s2602 Capsella rubella HOM05D004092 ORTHO05D005448 4.3e-209 732.3 821 50.4
vmacro09775 Vaccinium macrocarpon HOM05D004092 ORTHO05D005448 4.7e-208 728.8 931 48.0
EL10Ac2g03277 Beta vulgaris HOM05D004092 ORTHO05D005448 5.2e-207 725.3 876 50.1
AL2G39620 Arabidopsis lyrata HOM05D004092 ORTHO05D005448 1.3e-205 720.7 855 48.5
Nitab4.5_0005777g0060 Nicotiana tabacum HOM05D004092 ORTHO05D005448 4.9e-205 718.8 829 50.4
Aa31LG4G1850 Aethionema arabicum HOM05D004092 ORTHO05D005448 2.7e-203 713.0 841 48.9
BcaB02g08669 Brassica carinata HOM05D004092 ORTHO05D005448 3.3e-201 706.1 837 49.0
Os06g0498500 Oryza sativa ssp. japonica HOM05D004092 ORTHO05D005448 7.3e-201 704.9 821 50.7
Nitab4.5_0000232g0210 Nicotiana tabacum HOM05D004092 ORTHO05D005448 2.2e-197 693.3 829 49.9
BcaNung04898 Brassica carinata HOM05D004092 ORTHO05D005448 1.0e-186 657.9 684 53.4
Lju337C5G4 Lonicera japonica HOM05D004092 ORTHO05D005448 3.7e-184 649.4 843 49.7
AUR62016815 Chenopodium quinoa HOM05D004092 ORTHO05D005448 2.4e-183 646.7 824 47.9
AagrBONN_evm.TU.Sc2ySwM_117.3368 Anthoceros agrestis HOM05D004092 ORTHO05D005448 6.5e-181 638.6 868 45.9
Thhalv10018125m.g Eutrema salsugineum HOM05D004092 ORTHO05D005448 2.5e-177 626.7 686 52.2
Sp5g34210 Schrenkiella parvula HOM05D004092 ORTHO05D005448 5.5e-172 609.0 599 54.6
SMO169G0313 Selaginella moellendorffii HOM05D004092 ORTHO05D005448 8.2e-168 595.1 831 45.5
Phvul.L001940 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 6.1e-163 578.9 569 56.9
Pp3c3_9760 Physcomitrium patens HOM05D004092 ORTHO05D005448 5.0e-157 559.3 874 42.4
Mapoly0001s0281 Marchantia polymorpha HOM05D004092 ORTHO05D005448 1.4e-154 551.2 836 43.9
unitig_32.g11083 Utricularia gibba HOM05D004092 ORTHO05D005448 7.2e-148 528.9 604 51.0
Rhsim04G0123500 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.0e-137 494.2 610 49.0
CAN.G101.16 Capsicum annuum HOM05D004092 ORTHO05D005448 1.1e-124 451.8 451 55.4
CBR_g30814 Chara braunii HOM05D004092 ORTHO05D005448 3.5e-118 430.3 947 33.2
RhsimUnG0180500 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.0e-111 406.0 493 50.1
FAN21G2977 Fragaria x ananassa HOM05D004092 ORTHO05D005448 3.5e-110 403.7 379 57.5
Cpa.g.sc4.30 Carica papaya HOM05D004092 ORTHO05D005448 5.0e-109 399.8 383 57.7
Hma1.2p1_0334F.1_g128560 Hydrangea macrophylla HOM05D004092 ORTHO05D005448 3.9e-101 373.6 449 50.3
Rhsim04G0004800 Rhododendron simsii HOM05D004092 ORTHO05D005448 1.4e-98 365.2 308 60.1
Eucgr.G02299 Eucalyptus grandis HOM05D004092 ORTHO05D005448 1.2e-97 362.1 423 49.2
SHI21021 Sapria himalayana HOM05D004092 ORTHO05D005448 1.9e-87 328.2 446 44.4
Sopen00g013080 Solanum pennellii HOM05D004092 ORTHO05D005448 2.6e-81 307.8 289 57.4
MCO10G157 Micromonas commoda HOM05D004092 ORTHO05D005448 1.8e-74 285.0 866 29.6
CAN.G101.17 Capsicum annuum HOM05D004092 ORTHO05D005448 3.1e-74 284.3 330 50.6
Eucgr.F00934 Eucalyptus grandis HOM05D004092 ORTHO05D005448 3.9e-69 267.3 325 46.5
Haze_01706 Corylus avellana HOM05D004092 ORTHO05D005448 1.9e-68 265.0 242 60.3
Haze_01709 Corylus avellana HOM05D004092 ORTHO05D005448 9.6e-68 262.7 238 60.5
Sopen00g010230 Solanum pennellii HOM05D004092 ORTHO05D005448 1.6e-67 261.9 200 65.0
Haze_01705 Corylus avellana HOM05D004092 ORTHO05D005448 7.6e-65 253.1 228 58.3
Haze_01704 Corylus avellana HOM05D004092 ORTHO05D005448 1.0e-64 252.7 287 54.4
SHI21022 Sapria himalayana HOM05D004092 ORTHO05D005448 1.3e-53 215.7 195 57.4
unitig_32.g11084 Utricularia gibba HOM05D004092 ORTHO05D005448 5.3e-50 203.8 218 51.4
PGR138G0002 Punica granatum HOM05D004092 ORTHO05D005448 3.8e-48 197.6 264 49.6
Lsat_1_v5_gn_2_21921 Lactuca sativa HOM05D004092 ORTHO05D005448 4.8e-43 180.6 167 56.9
Phvul.011G073301 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 2.0e-36 158.7 192 48.4
PRCOL_00003431 Prasinoderma coloniale HOM05D004092 ORTHO05D005448 1.3e-35 156.0 566 27.9
Cfa022337 Carpinus fangiana HOM05D004092 ORTHO05D005448 1.0e-32 146.4 604 26.2
Rhsim04G0116800 Rhododendron simsii HOM05D005276 ORTHO05D006813 1.9e-31 142.1 217 41.9
Cre16.g659600 Chlamydomonas reinhardtii HOM05D004092 ORTHO05D005448 3.2e-31 141.4 513 26.7
Psat1g207400 Pisum sativum HOM05D004092 ORTHO05D005448 1.2e-30 139.4 171 50.3
SalBow7G2721 Salvia bowleyana HOM05D004092 ORTHO05D005448 1.2e-30 139.4 148 50.0
Sopen00g012990 Solanum pennellii HOM05D004092 ORTHO05D005448 2.3e-29 135.2 160 49.4
Rhsim04G0004600 Rhododendron simsii HOM05D004092 ORTHO05D005448 2.2e-27 128.6 137 55.5
Actinidia37125 Actinidia chinensis HOM05D004092 ORTHO05D005448 1.2e-25 122.9 109 64.2
BolC6t38166H Brassica oleracea HOM05D004092 ORTHO05D005448 4.5e-25 120.9 282 36.2
Cpa.g.sc2160.2 Carica papaya HOM05D004092 ORTHO05D005448 4.2e-23 114.4 73 68.5
C06p30050 Brassica napus HOM05D004092 ORTHO05D005448 7.2e-23 113.6 284 34.5
BcaC08g45374 Brassica carinata HOM05D004092 ORTHO05D005448 1.2e-22 112.8 291 34.4
BcaB02g07203 Brassica carinata HOM05D004092 ORTHO05D005448 1.8e-21 109.0 118 53.4
SalBow1G6550 Salvia bowleyana HOM05D004092 ORTHO05D005448 6.8e-21 107.1 164 38.4
Glyma.11G148802 Glycine max HOM05D004092 ORTHO05D016651 3.7e-19 101.3 106 50.9
Actinidia37124 Actinidia chinensis HOM05D004092 ORTHO05D005448 5.2e-13 80.9 76 52.6
Phvul.L001640 Phaseolus vulgaris HOM05D004092 ORTHO05D005448 5.7e-12 77.4 58 62.1
AL4G15030 Arabidopsis lyrata HOM05D001020 ORTHO05D001137 2.2e-11 75.5 181 36.5
A07p27270 Brassica napus HOM05D004092 ORTHO05D005448 2.8e-11 75.1 143 43.4
BraA07t30370Z Brassica rapa HOM05D004092 ORTHO05D005448 1.1e-10 73.2 146 41.8
QL04p079914 Quercus lobata HOM05D004092 ORTHO05D005448 1.8e-10 72.4 58 58.6
Sopen00g013090 Solanum pennellii HOM05D004092 ORTHO05D005448 5.4e-10 70.9 92 47.8
Rhsim04G0004900 Rhododendron simsii HOM05D004092 ORTHO05D005448 7.0e-10 70.5 57 64.9
ECA232G3953 Erigeron canadensis HOM05D015936 ORTHO05D022524 1.3e-08 66.2 72 50.0
arahy.Tifrunner.gnm1.ann1.83PK1U Arachis hypogaea HOM05D004092 ORTHO05D016651 1.7e-08 65.9 93 41.9
MSTRG.27614 Avicennia marina HOM05D004142 ORTHO05D005411 2.8e-06 58.5 135 28.9


User provided reference genes

Program Settings